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Journal of Biomolecular Structure and Dynamics Volume 17, 2000 - Issue 6
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Original Articles

NMR Evidence for Base Dynamics at all TpA Steps in DNA

Kathleen McAteer Environmental Molecular Sciences Laboratory, K8-98, Pacific Northwest National Laboratory, Richland, WA, 99352
&
Michael A. Kennedy Environmental Molecular Sciences Laboratory, K8-98, Pacific Northwest National Laboratory, Richland, WA, 99352
Pages 1001-1009 | Received 04 Feb 2000, Published online: 15 May 2012

Citations (16)

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Kathleen McAteer & MichaelA. Kennedy. (2003) Force Field Dependence of NMR-Based, Restrained Molecular Dynamics DNA Structure Calculations Including an Analysis of the Influence of Residual Dipolar Coupling Restraints. Journal of Biomolecular Structure and Dynamics 20:4, pages 487-506.
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Articles from other publishers (15)

A. Ben Imeddourene, L. Zargarian, M. Buckle, B. Hartmann & O. Mauffret. (2020) Slow motions in A·T rich DNA sequence. Scientific Reports 10:1.
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Pablo D Dans, Alexandra Balaceanu, Marco Pasi, Alessandro S Patelli, Daiva Petkevičiūtė, Jürgen Walther, Adam Hospital, Genís Bayarri, Richard Lavery, John H Maddocks & Modesto Orozco. (2019) The static and dynamic structural heterogeneities of B-DNA: extending Calladine–Dickerson rules. Nucleic Acids Research 47:21, pages 11090-11102.
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Faizule Hassan, Sarah L. Lossie, Ellen P. Kasik, Audrey M. Channon, Shuisong Ni & Michael A. Kennedy. (2018) A mouse model study of toxicity and biodistribution of a replication defective adenovirus serotype 5 virus with its genome engineered to contain a decoy hyper binding site to sequester and suppress oncogenic HMGA1 as a new cancer treatment therapy. PLOS ONE 13:2, pages e0192882.
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Miki Watanabe, Shuisong Ni, Amy L Lindenberger, Junho Cho, Stuart L Tinch & Michael A Kennedy. (2013) Characterization of the Stoichiometry of HMGA1/DNA Complexes. The Open Biochemistry Journal 7, pages 73-81.
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Jameson R. Bothe, Ky Lowenhaupt & Hashim M. Al-Hashimi. (2011) Sequence-Specific B-DNA Flexibility Modulates Z-DNA Formation. Journal of the American Chemical Society 133:7, pages 2016-2018.
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Xu-Qing Li & Ping Fan. (2010) A duplex DNA model with regular inter-base-pair hydrogen bonds. Journal of Theoretical Biology 266:3, pages 374-379.
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Grégoire Masliah, Brigitte René, Loussiné Zargarian, Serge Fermandjian & Olivier Mauffret. (2008) Identification of Intrinsic Dynamics in a DNA Sequence Preferentially Cleaved by Topoisomerase II Enzyme. Journal of Molecular Biology 381:3, pages 692-706.
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Yan Mei Wang, Shirley S. Chan & Robert H. Austin. 2006. BioMEMS and Biomedical Nanotechnology. BioMEMS and Biomedical Nanotechnology 477 496 .
Monique Marilley, Albert Sanchez-Sevilla & José Rocca-Serra. (2005) Fine mapping of inherent flexibility variation along DNA molecules. Validation by atomic force microscopy (AFM) in buffer. Molecular Genetics and Genomics 274:6, pages 658-670.
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Kathleen McAteer, Alejandro Aceves-Gaona, Ryszard Michalczyk, Garry W. Buchko, Nancy G. Isern, Louis A. “Pete” Silks, John H. Miller & Michael A. Kennedy. (2004) Compensating bends in a 16-base-pair DNA oligomer containing a T 3 A 3 segment: A NMR study of global DNA curvature . Biopolymers 75:6, pages 497-511.
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Filip Lanka?. (2004) DNA sequence-dependent deformability?insights from computer simulations. Biopolymers 73:3, pages 327-339.
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Filip Lankaš, Jiří Šponer, Jörg Langowski & Thomas E. CheathamIIIIII. (2003) DNA Basepair Step Deformability Inferred from Molecular Dynamics Simulations. Biophysical Journal 85:5, pages 2872-2883.
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Marco Tonelli, Nikolai B. Ulyanov, Todd M. Billeci, Boleslaw Karwowski, Piotr Guga, Wojciech J. Stec & Thomas L. James. (2003) Dynamic NMR Structures of [Rp]- and [Sp]-Phosphorothioated DNA-RNA Hybrids: Is Flexibility Required for RNase H Recognition?. Biophysical Journal 85:4, pages 2525-2538.
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T.M. Okonogi, S.C. Alley, A.W. Reese, P.B. Hopkins & B.H. Robinson. (2002) Sequence-Dependent Dynamics of Duplex DNA: The Applicability of a Dinucleotide Model. Biophysical Journal 83:6, pages 3446-3459.
Crossref
Chojiro Kojima, Nikolai B. Ulyanov, Masatsune Kainosho & Thomas L. James. (2001) Slow Motion in the CAA·TTG Sequence of a DNA Decamer Duplex Studied by NMR. Biochemistry 40:24, pages 7239-7246.
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