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Journal of Biomolecular Structure and Dynamics Volume 22, 2005 - Issue 4
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Original Articles

Protein Interactions and Fluctuations in a Proteomic Network using an Elastic Network Model

Melik C. Demirel College of Engineering Pennsylvania State University, University Park, PA, 16802, USA
&
Ozlem Keskin Center of Computational Biology and Bioinformatics, College of Engineering Koc University, 34450, Istanbul, Turkey; Laboratory of Experimental, Computational Biology, NCI-Frederick, NIH, Frederick, MD, 21702, USA
Pages 381-386 | Received 18 Aug 2004, Published online: 15 May 2012

Citations (16)

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Shan Chang, Hong-qiu He, Jian-ping Hu, Xiong Jiao & Xu-hong Tian. (2012) Network models reveal stability and structural rearrangement of signal recognition particle. Journal of Biomolecular Structure and Dynamics 30:2, pages 150-159.
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Christophe Jardin & Heinrich Sticht. (2012) Identification of the Structural Features that Mediate Binding Specificity in the Recognition of STAT Proteins by Dual-Specificity Phosphatases. Journal of Biomolecular Structure and Dynamics 29:4, pages 777-792.
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Ji Guo Su, Xian Jin Xu, Chun Hua Li, Wei Zu Chen & Cun Xin Wang. (2011) An Analysis of the Influence of Protein Intrinsic Dynamical Properties on its Thermal Unfolding Behavior. Journal of Biomolecular Structure and Dynamics 29:1, pages 105-121.
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S. Ciliberti, P. De Los Rios & F. Piazza. (2007) On the origin of the boson peak in globular proteins. Philosophical Magazine 87:3-5, pages 631-641.
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Articles from other publishers (12)

Michaela Frolikova, Vishma Pratap Sur, Ivan Novotny, Michaela Blazikova, Jana Vondrakova, Ondrej Simonik, Lukas Ded, Eliska Valaskova, Lenka Koptasikova, Ales Benda, Pavla Postlerova, Ondrej Horvath & Katerina Komrskova. (2023) Juno and CD9 protein network organization in oolemma of mouse oocyte. Frontiers in Cell and Developmental Biology 11.
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Dashuai Lv, Cunxin Wang, Chunhua Li, Jianjun Tan & Xiaoyi Zhang. (2017) An efficient perturbation method to predict the functionally key sites of glutamine binding protein. Computational Biology and Chemistry 67, pages 62-68.
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Melik C. Demirel, Murat Cetinkaya, Abdon Pena-Francesch & Huihun Jung. (2015) Recent Advances in Nanoscale Bioinspired Materials. Macromolecular Bioscience 15:3, pages 300-311.
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Valentina Tozzini. (2010) Minimalist models for proteins: a comparative analysis. Quarterly Reviews of Biophysics 43:3, pages 333-371.
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Kay Hamacher. (2009) Temperature dependence of fluctuations in HIV1-protease. European Biophysics Journal 39:7, pages 1051-1056.
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Sandra Maguid, Sebastian Fernandez-Alberti & Julian Echave. (2008) Evolutionary conservation of protein vibrational dynamics. Gene 422:1-2, pages 7-13.
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Ji Guo Su, Chun Hua Li, Rui Hao, Wei Zu Chen & Cun Xin Wang. (2008) Protein Unfolding Behavior Studied by Elastic Network Model. Biophysical Journal 94:12, pages 4586-4596.
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Ozlem Keskin, Attila Gursoy, Buyong Ma & Ruth Nussinov. (2008) Principles of Protein−Protein Interactions: What are the Preferred Ways For Proteins To Interact?. Chemical Reviews 108:4, pages 1225-1244.
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Chakra Chennubhotla, Zheng Yang & Ivet Bahar. (2008) Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL. Molecular BioSystems 4:4, pages 287.
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Ozlem Keskin & Ruth Nussinov. (2007) Similar Binding Sites and Different Partners: Implications to Shared Proteins in Cellular Pathways. Structure 15:3, pages 341-354.
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Melik C. Demirel & Arthur M. Lesk. (2005) Molecular Forces in Antibody Maturation. Physical Review Letters 95:20.
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Melik C. Demirel & Dmitry Cherny. (2005) Clustering and diversity of fluctuations for proteins. Nanomedicine: Nanotechnology, Biology and Medicine 1:1, pages 41-46.
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