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Journal of Biomolecular Structure and Dynamics Volume 23, 2005 - Issue 3
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Original Articles

Protein Sequence Modules

Elik Aharonovsky Genome Diversity Center, Institute of Evolution University of Haifa, Haifa, 31905, Israel
&
Edward N. Trifonov Genome Diversity Center, Institute of Evolution University of Haifa, Haifa, 31905, Israel
Pages 237-242 | Received 07 Jun 2005, Published online: 15 May 2012

Citations (15)

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Read on this site (3)

Gustavo Caetano-Anollés, M. Fayez Aziz, Fizza Mughal & Derek Caetano-Anollés. (2021) Tracing protein and proteome history with chronologies and networks: folding recapitulates evolution. Expert Review of Proteomics 18:10, pages 863-880.
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ZakhariaM. Frenkel. (2008) Does Protein Relatedness Require Sequence Matching? Alignment via Networks in Sequence Space. Journal of Biomolecular Structure and Dynamics 26:2, pages 215-222.
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EdwardN. Trifonov. (2006) Early Molecular Evolution. Israel Journal of Ecology & Evolution 52:3-4, pages 375-387.
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Articles from other publishers (12)

M. Fayez Aziz, Fizza Mughal & Gustavo Caetano-Anollés. (2023) Tracing the birth of structural domains from loops during protein evolution. Scientific Reports 13:1.
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Dirson Jian Li. (2022) Distributional features of triplet codons in genomes underlie the diversification of life. Biosystems 217, pages 104681.
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M. Fayez Aziz, Kelsey Caetano-Anollés & Gustavo Caetano-Anollés. (2016) The early history and emergence of molecular functions and modular scale-free network behavior. Scientific Reports 6:1.
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Sree V. Chintapalli, Christopher J. R. Illingworth, Graham J. G. Upton, Sophie Sacquin-Mora, Philip J. Reeves, Hani S. Mohammedali & Christopher A. Reynolds. (2014) Assessing the effect of dynamics on the closed-loop protein-folding hypothesis. Journal of The Royal Society Interface 11:91, pages 20130935.
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Kenta Motomura, Morikazu Nakamura & Joji M. Otaki. (2013) A FREQUENCY-BASED LINGUISTIC APPROACH TO PROTEIN DECODING AND DESIGN: SIMPLE CONCEPTS, DIVERSE APPLICATIONS, AND THE SCS PACKAGE. Computational and Structural Biotechnology Journal 5:6, pages e201302010.
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Sree V. Chintapalli, Boon K. Yew, Christopher J. R. Illingworth, Graham J. G. Upton, Philip J. Reeves, Kevin E. B. Parkes, Christopher R. Snell & Christopher A. Reynolds. (2010) Closed loop folding units from structural alignments: Experimental foldons revisited. Journal of Computational Chemistry 31:15, pages 2689-2701.
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Zakharia M. Frenkel & Edward N. Trifonov. (2008) From protein sequence space to elementary protein modules. Gene 408:1-2, pages 64-71.
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Edward N. Trifonov. 2008. The Codes of Life. The Codes of Life 3 14 .
Yehoshua Sobolevsky, Zakharia M. Frenkel & Edward N. Trifonov. (2007) Combinations of Ancestral Modules in Proteins. Journal of Molecular Evolution 65:6, pages 640-650.
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Boon K. Yew, Sree V. Chintapalli, Graham G.C. Upton & Christopher A. Reynolds. (2007) Conservation of closed loops. Journal of Molecular Graphics and Modelling 26:3, pages 652-655.
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Edward N. Trifonov, Idan Gabdank, Danny Barash & Yehoshua Sobolevsky. (2006) Primordia Vita. Deconvolution from Modern Sequences.. Origins of Life and Evolution of Biospheres 36:5-6, pages 559-565.
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Yehoshua Sobolevsky & Edward N. Trifonov. (2006) Protein Modules Conserved Since LUCA. Journal of Molecular Evolution 63:5, pages 622-634.
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