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Journal of Biomolecular Structure and Dynamics Volume 31, 2013 - Issue 1: Predictive biology using systems and integrative analysis and methods
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Articles

Dynamic clustering of lipids in hydrated two-component membranes: results of computer modeling and putative biological impact

Darya V. Pyrkova M.M. Shemyakin & Yu.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, ul. Miklukho-Maklaya, 16/10, Moscow, 117997, Russia
,
Natalya K. Tarasova M.M. Shemyakin & Yu.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, ul. Miklukho-Maklaya, 16/10, Moscow, 117997, Russia; Biological Faculty, Department of Bioengineering, Moscow Lomonosov State University, Leninskiye gory, 1/12, Moscow, 119992, Russia
,
Nikolay A. Krylov M.M. Shemyakin & Yu.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, ul. Miklukho-Maklaya, 16/10, Moscow, 117997, Russia
,
Dmitry E. Nolde M.M. Shemyakin & Yu.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, ul. Miklukho-Maklaya, 16/10, Moscow, 117997, Russia
,
Vladimir M. Pentkovsky Moscow Institute of Physics and Technology (State University), 141700, Institutskii per., 9, Dolgoprudny, Moscow, Russia
&
Roman G. Efremov M.M. Shemyakin & Yu.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, ul. Miklukho-Maklaya, 16/10, Moscow, 117997, RussiaCorrespondence[email protected]
Pages 87-95 | Received 30 Apr 2011, Accepted 16 Feb 2012, Published online: 18 Jul 2012

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Peter V. Dubovskii & Roman G. Efremov. (2018) The role of hydrophobic /hydrophilic balance in the activity of structurally flexible vs. rigid cytolytic polypeptides and analogs developed on their basis. Expert Review of Proteomics 15:11, pages 873-886.
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Articles from other publishers (11)

Honey Jain, Konstantina Karathanou & Ana-Nicoleta Bondar. (2023) Graph-Based Analyses of Dynamic Water-Mediated Hydrogen-Bond Networks in Phosphatidylserine: Cholesterol Membranes. Biomolecules 13:8, pages 1238.
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Roman G. Efremov. (2021) Dynamic “Molecular Portraits” of Biomembranes Drawn by Their Lateral Nanoscale Inhomogeneities. International Journal of Molecular Sciences 22:12, pages 6250.
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Anastasia G. Konshina, Nikolay A. Krylov & Roman G. Efremov. (2017) Cardiotoxins: Functional Role of Local Conformational Changes. Journal of Chemical Information and Modeling 57:11, pages 2799-2810.
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Eduard V. Bocharov, Konstantin S. Mineev, Konstantin V. Pavlov, Sergey A. Akimov, Andrey S. Kuznetsov, Roman G. Efremov & Alexander S. Arseniev. (2017) Helix-helix interactions in membrane domains of bitopic proteins: Specificity and role of lipid environment. Biochimica et Biophysica Acta (BBA) - Biomembranes 1859:4, pages 561-576.
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Sanja Pöyry & Ilpo Vattulainen. (2016) Role of charged lipids in membrane structures — Insight given by simulations. Biochimica et Biophysica Acta (BBA) - Biomembranes 1858:10, pages 2322-2333.
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A. S. Alekseeva, D. S. Tretiakova, D. N. Melnikova, Ul. G. Molotkovsky & I. A. Boldyrev. (2016) Novel fluorescent membrane probe 2,3;5,6-bis(cyclohexyl)-BODIPY-labeled phosphatidylcholine. Russian Journal of Bioorganic Chemistry 42:3, pages 305-309.
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Andrey S. Kuznetsov, Anton A. Polyansky, Markus Fleck, Pavel E. Volynsky & Roman G. Efremov. (2015) Adaptable Lipid Matrix Promotes Protein–Protein Association in Membranes. Journal of Chemical Theory and Computation 11:9, pages 4415-4426.
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Jun Zhang, Jie Zhong, Wen Li, Muhan Wang, Bing Liu, Zhen Li & Youguo Yan. (2015) Molecular insight into the dynamical adsorption behavior of nanoscale water droplets on a heterogeneous surface. RSC Advances 5:65, pages 52322-52329.
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Anton O. Chugunov, Pavel E. Volynsky, Nikolay A. Krylov, Ivan A. Boldyrev & Roman G. Efremov. (2014) Liquid but Durable: Molecular Dynamics Simulations Explain the Unique Properties of Archaeal-Like Membranes. Scientific Reports 4:1.
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Nikolay A. Krylov, Vladimir M. Pentkovsky & Roman G. Efremov. (2013) Nontrivial Behavior of Water in the Vicinity and Inside Lipid Bilayers As Probed by Molecular Dynamics Simulations. ACS Nano 7:10, pages 9428-9442.
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Anton Chugunov, Darya Pyrkova, Dmitry Nolde, Anton Polyansky, Vladimir Pentkovsky & Roman Efremov. (2013) Lipid-II forms potential “landing terrain” for lantibiotics in simulated bacterial membrane. Scientific Reports 3:1.
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