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Journal of Biomolecular Structure and Dynamics Volume 31, 2013 - Issue 1: Predictive biology using systems and integrative analysis and methods
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Articles

Hidden coding potential of eukaryotic genomes: nonAUG started ORFs

Alex V. Kochetov Institute of Cytology and Genetics, 10, Lavrentiev Ave, Novosibirsk, 630090, Russia; Novosibirsk State University, 2, Pirogov Ave, Novosibirsk, 630090, RussiaCorrespondence[email protected]
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Phani Deep Prayaga Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur, 208016, India
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Oxana A. Volkova Institute of Cytology and Genetics, 10, Lavrentiev Ave, Novosibirsk, 630090, Russia; Novosibirsk State University, 2, Pirogov Ave, Novosibirsk, 630090, Russia
&
Ramasubbu Sankararamakrishnan Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur, 208016, IndiaCorrespondence[email protected]
Pages 103-114 | Received 21 Mar 2011, Accepted 29 Mar 2012, Published online: 18 Jul 2012

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Hung-Hsi Chen & Woan-Yuh Tarn. (2019) uORF-mediated translational control: recently elucidated mechanisms and implications in cancer. RNA Biology 16:10, pages 1327-1338.
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Yuji Fujimoto, Takuya Keima, Masayoshi Hashimoto, Yuka Hagiwara-Komoda, Naoi Hosoe, Shuko Nishida, Takamichi Nijo, Kenro Oshima, Jeanmarie Verchot, Shigetou Namba & Yasuyuki Yamaji. (2022) Short 5′ Untranslated Region Enables Optimal Translation of Plant Virus Tricistronic RNA via Leaky Scanning. Journal of Virology 96:7.
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Joana Silva, Pedro Nina & Luísa Romão. (2021) Translation of ABCE1 Is Tightly Regulated by Upstream Open Reading Frames in Human Colorectal Cells. Biomedicines 9:8, pages 911.
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Ekaterina A. Trifonova, Alexandra I. Klimenko, Zakhar S. Mustafin, Sergey A. Lashin & Alex V. Kochetov. (2019) The mTOR Signaling Pathway Activity and Vitamin D Availability Control the Expression of Most Autism Predisposition Genes. International Journal of Molecular Sciences 20:24, pages 6332.
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Pieter Spealman, Armaghan W. Naik, Gemma E. May, Scott Kuersten, Lindsay Freeberg, Robert F. Murphy & Joel McManus. (2018) Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data. Genome Research 28:2, pages 214-222.
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Ekaterina V. Sheshukova, Tatiana V. Komarova, Natalia M. Ershova, Anastasia V. Shindyapina & Yuri L. Dorokhov. (2017) An Alternative Nested Reading Frame May Participate in the Stress-Dependent Expression of a Plant Gene. Frontiers in Plant Science 8.
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Lee B. Miles, Sebastian Dworkin & Charbel Darido. (2017) Alternative splicing and start sites: Lessons from the Grainyhead-like family. Developmental Biology 429:1, pages 12-19.
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Teresa Botta-Orfila, Gian Gaetano Tartaglia & Aubin Michalon. (2016) Molecular Pathophysiology of Fragile X-Associated Tremor/Ataxia Syndrome and Perspectives for Drug Development. The Cerebellum 15:5, pages 599-610.
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E. V. Sheshukova, A. V. Shindyapina, T. V. Komarova & Yu. L. Dorokhov. (2016) “Matreshka” genes with alternative reading frames. Russian Journal of Genetics 52:2, pages 125-140.
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Klaus Wethmar. (2014) The regulatory potential of upstream open reading frames in eukaryotic gene expression. Wiley Interdisciplinary Reviews: RNA 5:6, pages 765-768.
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Maria L. Guerrero-González, Margarita Rodríguez-Kessler & Juan F. Jiménez-Bremont. (2014) uORF, a regulatory mechanism of the Arabidopsis polyamine oxidase 2. Molecular Biology Reports 41:4, pages 2427-2443.
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Benoît Vanderperre, Jean-François Lucier, Cyntia Bissonnette, Julie Motard, Guillaume Tremblay, Solène Vanderperre, Maxence Wisztorski, Michel Salzet, François-Michel Boisvert & Xavier Roucou. (2013) Direct Detection of Alternative Open Reading Frames Translation Products in Human Significantly Expands the Proteome. PLoS ONE 8:8, pages e70698.
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Jiajie Wei, Ying Zhang, Ivaylo P. Ivanov & Matthew S. Sachs. (2013) The Stringency of Start Codon Selection in the Filamentous Fungus Neurospora crassa. Journal of Biological Chemistry 288:13, pages 9549-9562.
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