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Bi Zhao & Lukasz Kurgan. (2021) Surveying over 100 predictors of intrinsic disorder in proteins. Expert Review of Proteomics 18:12, pages 1019-1029.
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Anna Rita Migliaccio & Vladimir N. Uversky. (2018) Dissecting physical structure of calreticulin, an intrinsically disordered Ca2+-buffering chaperone from endoplasmic reticulum. Journal of Biomolecular Structure and Dynamics 36:6, pages 1617-1636.
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Hiba Shaban, Insing Na, Angelina A. Kislichkina, Svetlana V. Dentovskaya, Andrey P. Anisimov & Vladimir N. Uversky. (2017) Effect of natural polymorphism on structure and function of the Yersinia pestis outer membrane porin F (OmpF protein): a computational study. Journal of Biomolecular Structure and Dynamics 35:12, pages 2588-2603.
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Victor P. Kutyshenko, Dmitry A. Prokhorov, Galina V. Mikoulinskaia, Nikolai V. Molochkov, Svetlana I. Paskevich & Vladimir N. Uversky. (2017) Evidence for the residual tertiary structure in the urea-unfolded form of bacteriophage T5 endolysin. Journal of Biomolecular Structure and Dynamics 35:6, pages 1331-1338.
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Haitham A. Yacoub, Omar A. Al-Maghrabi, Ekram S. Ahmed & Vladimir N. Uversky. (2017) Abundance and functional roles of intrinsic disorder in the antimicrobial peptides of the NK-lysin family. Journal of Biomolecular Structure and Dynamics 35:4, pages 836-856.
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Lili Liu, Lei Chen, Yu-Hang Zhang, Lai Wei, Shiwen Cheng, Xiangyin Kong, Mingyue Zheng, Tao Huang & Yu-Dong Cai. (2017) Analysis and prediction of drug–drug interaction by minimum redundancy maximum relevance and incremental feature selection. Journal of Biomolecular Structure and Dynamics 35:2, pages 312-329.
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Haitham A. Yacoub, Mahmoud A. Sadek & Vladimir N. Uversky. (2017) On the potential of using peculiarities of the protein intrinsic disorder distribution in mitochondrial cytochrome b to identify the source of animal meats. Intrinsically Disordered Proteins 5:1.
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Olga V. Stepanenko, Olga I. Povarova, Anna I. Sulatskaya, Luisa A. Ferreira, Boris Y. Zaslavsky, Irina M. Kuznetsova, Konstantin K. Turoverov & Vladimir N. Uversky. (2016) Protein unfolding in crowded milieu: what crowding can do to a protein undergoing unfolding?. Journal of Biomolecular Structure and Dynamics 34:10, pages 2155-2170.
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Zhenling Peng, Vladimir N. Uversky & Lukasz Kurgan. (2016) Genes encoding intrinsic disorder in Eukaryota have high GC content. Intrinsically Disordered Proteins 4:1.
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Philippe Lieutaud, François Ferron, Alexey V. Uversky, Lukasz Kurgan, Vladimir N. Uversky & Sonia Longhi. (2016) How disordered is my protein and what is its disorder for? A guide through the “dark side” of the protein universe. Intrinsically Disordered Proteins 4:1.
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Lucia Sena & Vladimir N. Uversky. (2016) Comparison of the intrinsic disorder propensities of the RuBisCO activase enzyme from the motile and non-motile oceanic green microalgae. Intrinsically Disordered Proteins 4:1.
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Reis Fitzsimmons, Narmin Amin & Vladimir N. Uversky. (2016) Understanding the roles of intrinsic disorder in subunits of hemoglobin and the disease process of sickle cell anemia. Intrinsically Disordered Proteins 4:1.
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Osama H. Al-Jiffri, Fadwa M. Al-Sharif, Essam H. Al-Jiffri & Vladimir N. Uversky. (2016) Intrinsic disorder in biomarkers of insulin resistance, hypoadiponectinemia, and endothelial dysfunction among the type 2 diabetic patients. Intrinsically Disordered Proteins 4:1.
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Shelly DeForte, Krishna D. Reddy & Vladimir N. Uversky. (2016) Quarterly intrinsic disorder digest (January-February-March, 2014). Intrinsically Disordered Proteins 4:1.
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Vladimir N Uversky. (2015) Unreported intrinsic disorder in proteins: Disorder emergency room . Intrinsically Disordered Proteins 3:1.
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Articles from other publishers (120)
Lukasz Kurgan, Gang Hu, Kui Wang, Sina Ghadermarzi, Bi Zhao, Nawar Malhis, Gábor Erdős, Jörg Gsponer, Vladimir N. Uversky & Zsuzsanna Dosztányi. (2023) Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteins. Nature Protocols 18:11, pages 3157-3172.
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Yaxing Yang, Xiaorui Song, Nan Cui, Tianying Lei, Ying Huang, Yan Shi, Yadong Hu, Xinghu Zhou & Zhe Zhao. (2023) Functional characterization of obscure puffer ToNK-lysin: A novel immunomodulator possessing anti-bacterial and anti-inflammatory properties. Fish & Shellfish Immunology 142, pages 109080.
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Vladimir N. Uversky & Lukasz Kurgan. (2023) Overview Update: Computational Prediction of Intrinsic Disorder in Proteins. Current Protocols 3:6.
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Bingqing Han, Chongjiao Ren, Wenda Wang, Jiashan Li & Xinqi Gong. (2023) Computational Prediction of Protein Intrinsically Disordered Region Related Interactions and Functions. Genes 14:2, pages 432.
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Zhenling Peng, Zixia Li, Qiaozhen Meng, Bi Zhao & Lukasz Kurgan. (2023) CLIP: accurate prediction of disordered linear interacting peptides from protein sequences using co-evolutionary information. Briefings in Bioinformatics 24:1.
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Sushmita Basu, Daisuke Kihara & Lukasz Kurgan. (2023) Computational prediction of disordered binding regions. Computational and Structural Biotechnology Journal 21, pages 1487-1497.
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Frank Gondelaud, Antoine Schramm, Stefania Brocca, Antonino Natalello, Rita Grandori, Carlo Santambrogio & Sonia Longhi. 2023. Structure and Intrinsic Disorder in Enzymology. Structure and Intrinsic Disorder in Enzymology
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Sarah E. Bondos, A. Keith Dunker & Vladimir N. Uversky. (2022) Intrinsically disordered proteins play diverse roles in cell signaling. Cell Communication and Signaling 20:1.
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Rajkumar Chakraborty & Yasha Hasija. (2022) Predicting protein intrinsically disordered regions by applying natural language processing practices. Soft Computing 26:22, pages 12343-12353.
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Alexey S. Kazakov, Evgenia I. Deryusheva, Maria E. Permyakova, Andrey S. Sokolov, Victoria A. Rastrygina, Vladimir N. Uversky, Eugene A. Permyakov & Sergei E. Permyakov. (2022) Calcium-Bound S100P Protein Is a Promiscuous Binding Partner of the Four-Helical Cytokines. International Journal of Molecular Sciences 23:19, pages 12000.
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Raquel P. Bezerra, Amanda S. Conniff & Vladimir N. Uversky. (2022) Comparative study of structures and functional motifs in lectins from the commercially important photosynthetic microorganisms. Biochimie 201, pages 63-74.
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Ranran Chen, Xinlu Li, Yaqing Yang, Xixi Song, Cheng Wang & Dongdong Qiao. (2022) Prediction of protein-protein interaction sites in intrinsically disordered proteins. Frontiers in Molecular Biosciences 9.
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Lukasz Kurgan. (2022) Resources for computational prediction of intrinsic disorder in proteins. Methods 204, pages 132-141.
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Bi Zhao & Lukasz Kurgan. (2022) Compositional Bias of Intrinsically Disordered Proteins and Regions and Their Predictions. Biomolecules 12:7, pages 888.
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Kyle P. Smith, Woonghee Lee, Marco Tonelli, Yeongjoon Lee, Samuel H. Light, Gabriel Cornilescu & Srinivas Chakravarthy. (2022)
Solution structure and dynamics of the mitochondrial‐targeted
GTPase
‐activating protein
(GAP) VopE
by an integrated
NMR
/
SAXS
approach
. Protein Science 31:5.
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Sk. Sarif Hassan, Pabitra Pal Choudhury, Guy W. DayhoffIIII, Alaa A.A. Aljabali, Bruce D. Uhal, Kenneth Lundstrom, Nima Rezaei, Damiano Pizzol, Parise Adadi, Amos Lal, Antonio Soares, Tarek Mohamed Abd El-Aziz, Adam M. Brufsky, Gajendra Kumar Azad, Samendra P. Sherchan, Wagner Baetas-da-Cruz, Kazuo Takayama, Ãngel Serrano-Aroca, Gaurav Chauhan, Giorgio Palu, Yogendra Kumar Mishra, Debmalya Barh, Raner Jośe Santana Silva, Bruno Silva Andrade, Vasco Azevedo, Aristóteles Góes-Neto, Nicolas G. Bazan, Elrashdy M. Redwan, Murtaza Tambuwala & Vladimir N. Uversky. (2022) The importance of accessory protein variants in the pathogenicity of SARS-CoV-2. Archives of Biochemistry and Biophysics 717, pages 109124.
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Sk. Sarif Hassan, Kenneth Lundstrom, Ángel Serrano-Aroca, Parise Adadi, Alaa A.A. Aljabali, Elrashdy M. Redwan, Amos Lal, Ramesh Kandimalla, Tarek Mohamed Abd El-Aziz, Pabitra Pal Choudhury, Gajendra Kumar Azad, Samendra P. Sherchan, Gaurav Chauhan, Murtaza Tambuwala, Kazuo Takayama, Debmalya Barh, Giorgio Palu, Pallab Basu & Vladimir N. Uversky. (2022) Emergence of unique SARS-CoV-2 ORF10 variants and their impact on protein structure and function. International Journal of Biological Macromolecules 194, pages 128-143.
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Bi Zhao & Lukasz Kurgan. (2022) Deep learning in prediction of intrinsic disorder in proteins. Computational and Structural Biotechnology Journal 20, pages 1286-1294.
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Ketty C. Tamburrini, Giulia Pesce, Juliet Nilsson, Frank Gondelaud, Andrey V. Kajava, Jean-Guy Berrin & Sonia Longhi. 2022. Data Mining Techniques for the Life Sciences. Data Mining Techniques for the Life Sciences
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Hao He & Yong Yang. (2021) Computational Prediction of Intrinsically Disordered Proteins Based on Protein Sequences and Convolutional Neural Networks. Computational Intelligence and Neuroscience 2021, pages 1-8.
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Naveen Kumar, Rahul Kaushik, Chandana Tennakoon, Vladimir N Uversky, Sonia Longhi, Kam Y J Zhang & Sandeep Bhatia. (2021) Insights into the evolutionary forces that shape the codon usage in the viral genome segments encoding intrinsically disordered protein regions. Briefings in Bioinformatics 22:5.
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Sk. Sarif Hassan, Diksha Attrish, Shinjini Ghosh, Pabitra Pal Choudhury, Vladimir N. Uversky, Alaa A.A. Aljabali, Kenneth Lundstrom, Bruce D. Uhal, Nima Rezaei, Murat Seyran, Damiano Pizzol, Parise Adadi, Antonio Soares, Tarek Mohamed Abd El-Aziz, Ramesh Kandimalla, Murtaza M. Tambuwala, Gajendra Kumar Azad, Samendra P. Sherchan, Wagner Baetas-da-Cruz, Amos Lal, Giorgio Palù, Kazuo Takayama, Ángel Serrano-Aroca, Debmalya Barh & Adam M. Brufsky. (2021) Notable sequence homology of the ORF10 protein introspects the architecture of SARS-CoV-2. International Journal of Biological Macromolecules 181, pages 801-809.
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Sk Sarif Hassan, Alaa A. A. Aljabali, Pritam Kumar Panda, Shinjini Ghosh, Diksha Attrish, Pabitra Pal Choudhury, Murat Seyran, Damiano Pizzol, Parise Adadi, Tarek Mohamed Abd El-Aziz, Antonio Soares, Ramesh Kandimalla, Kenneth Lundstrom, Amos Lal, Gajendra Kumar Azad, Vladimir N. Uversky, Samendra P. Sherchan, Wagner Baetas-da-Cruz, Bruce D. Uhal, Nima Rezaei, Gaurav Chauhan, Debmalya Barh, Elrashdy M. Redwan, Guy W. DayhoffIIII, Nicolas G. Bazan, Ángel Serrano-Aroca, Amr El-Demerdash, Yogendra K. Mishra, Giorgio Palu, Kazuo Takayama, Adam M. Brufsky & Murtaza M. Tambuwala. (2021) A unique view of SARS-CoV-2 through the lens of ORF8 protein. Computers in Biology and Medicine 133, pages 104380.
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Yulia S. Lapteva, Alisa A. Vologzhannikova, Andrey S. Sokolov, Ramis G. Ismailov, Vladimir N. Uversky & Sergei E. Permyakov. (2020) In Vitro N-Terminal Acetylation of Bacterially Expressed Parvalbumins by N-Terminal Acetyltransferases from Escherichia coli. Applied Biochemistry and Biotechnology 193:5, pages 1365-1378.
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Mikael Karjalainen, Maarit Hellman, Helena Tossavainen & Perttu Permi. (2021) 1H, 13C, and 15N NMR chemical shift assignment of the complex formed by the first EPEC EspF repeat and N-WASP GTPase binding domain. Biomolecular NMR Assignments 15:1, pages 213-217.
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Marta Kolonko-Adamska, Vladimir N. Uversky & Beata Greb-Markiewicz. (2021) The Participation of the Intrinsically Disordered Regions of the bHLH-PAS Transcription Factors in Disease Development. International Journal of Molecular Sciences 22:6, pages 2868.
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Akila Katuwawala, Sina Ghadermarzi, Gang Hu, Zhonghua Wu & Lukasz Kurgan. (2021) QUARTERplus: Accurate disorder predictions integrated with interpretable residue-level quality assessment scores. Computational and Structural Biotechnology Journal 19, pages 2597-2606.
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Lukasz Kurgan, Min Li & Yaohang Li. 2021. Systems Medicine. Systems Medicine
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Fuhao Zhang, Wenbo Shi, Jian Zhang, Min Zeng, Min Li & Lukasz Kurgan. (2020) PROBselect: accurate prediction of protein-binding residues from proteins sequences via dynamic predictor selection. Bioinformatics 36:Supplement_2, pages i735-i744.
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Akila Katuwawala & Lukasz Kurgan. (2020) Comparative Assessment of Intrinsic Disorder Predictions with a Focus on Protein and Nucleic Acid-Binding Proteins. Biomolecules 10:12, pages 1636.
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John K. Cusick, Yasmeen Alhomsy, Stephanie Wong, George Talbott, Vladimir N. Uversky, Cara Hart, Nazila Hejazi, Aaron T. Jacobs & Yihui Shi. (2020) RELT stains prominently in B-cell lymphomas and binds the hematopoietic transcription factor MDFIC. Biochemistry and Biophysics Reports 24, pages 100868.
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Maria A. Majorina, Vitaly A. Balobanov, Vladimir N Uversky & Bogdan S. Melnik. (2020) Loops linking secondary structure elements affect the stability of the molten globule intermediate state of apomyoglobin. FEBS Letters 594:20, pages 3293-3304.
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Mohsen Akbarian, Reza Yousefi, Fatemeh Farjadian & Vladimir N. Uversky. (2020) Insulin fibrillation: toward strategies for attenuating the process. Chemical Communications 56:77, pages 11354-11373.
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Akila Katuwawala, Christopher J Oldfield & Lukasz Kurgan. (2020) Accuracy of protein-level disorder predictions. Briefings in Bioinformatics 21:5, pages 1509-1522.
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Kui Wang, Gang Hu, Zhonghua Wu, Hong Su, Jianyi Yang & Lukasz Kurgan. (2020) Comprehensive Survey and Comparative Assessment of RNA-Binding Residue Predictions with Analysis by RNA Type. International Journal of Molecular Sciences 21:18, pages 6879.
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Nitin Sharma, Alexander V. Fonin, Olesya G. Shpironok, Sergey A. Silonov, Konstantin K. Turoverov, Vladimir N. Uversky, Irina M. Kuznetsova & Rajanish Giri. (2020) Folding perspectives of an intrinsically disordered transactivation domain and its single mutation breaking the folding propensity. International Journal of Biological Macromolecules 155, pages 1359-1372.
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Jing Yan, Jianlin Cheng, Lukasz Kurgan & Vladimir N. Uversky. (2019) Structural and functional analysis of “non-smelly” proteins. Cellular and Molecular Life Sciences 77:12, pages 2423-2440.
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Amita Barik, Akila Katuwawala, Jack Hanson, Kuldip Paliwal, Yaoqi Zhou & Lukasz Kurgan. (2020) DEPICTER: Intrinsic Disorder and Disorder Function Prediction Server. Journal of Molecular Biology 432:11, pages 3379-3387.
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Anukool A. Bhopatkar, Vladimir N. Uversky & Vijayaraghavan Rangachari. (2020) Granulins modulate liquid–liquid phase separation and aggregation of the prion-like C-terminal domain of the neurodegeneration-associated protein TDP-43. Journal of Biological Chemistry 295:8, pages 2506-2519.
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Liucun Zhu, Pengfei Huang, Rui Zhu, Fangxia Guan & Wenna Guo. (2020) Extracting Explicable Rules for the Identification of Compound–Protein Interactions. IEEE Access 8, pages 70005-70012.
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Christopher J. Oldfield, Zhenling Peng, Vladimir N. Uversky & Lukasz Kurgan. (2019) Codon selection reduces GC content bias in nucleic acids encoding for intrinsically disordered proteins. Cellular and Molecular Life Sciences 77:1, pages 149-160.
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Zhonghua Wu, Gang Hu, Christopher J. Oldfield & Lukasz Kurgan. 2020. Protein Structure Prediction. Protein Structure Prediction
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Vladimir N. Uversky. 2020. Intrinsically Disordered Proteins. Intrinsically Disordered Proteins
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Christopher J. Oldfield, Xiao Fan, Chen Wang, A. Keith Dunker & Lukasz Kurgan. 2020. Intrinsically Disordered Proteins. Intrinsically Disordered Proteins
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35
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Christopher J. Oldfield, Zhenling Peng & Lukasz Kurgan. 2020. RNA Chaperones. RNA Chaperones
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239
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Akila Katuwawala, Christopher J. Oldfield & Lukasz Kurgan. (2019) DISOselect: Disorder predictor selection at the protein level. Protein Science 29:1, pages 184-200.
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Letitia O. Puster, Christopher B. Stanley, Vladimir N. Uversky, Joseph E. Curtis, Susan Krueger, Yuzhuo Chu & Cynthia B. Peterson. (2019) Characterization of an Extensive Interface on Vitronectin for Binding to Plasminogen Activator Inhibitor-1: Adoption of Structure in an Intrinsically Disordered Region. Biochemistry 58:51, pages 5117-5134.
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Sourav Chowdhury, Dwipanjan Sanyal, Sagnik Sen, Vladimir N. Uversky, Ujjwal Maulik & Krishnananda Chattopadhyay. (2019) Evolutionary Analyses of Sequence and Structure Space Unravel the Structural Facets of SOD1. Biomolecules 9:12, pages 826.
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Walter Basile, Marco Salvatore, Claudio Bassot & Arne Elofsson. (2019) Why do eukaryotic proteins contain more intrinsically disordered regions?. PLOS Computational Biology 15:7, pages e1007186.
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Sergey E. Permyakov, Alisa S. Vologzhannikova, Ekaterina L. Nemashkalova, Alexei S. Kazakov, Alexander I. Denesyuk, Konstantin Denessiouk, Viktoriia E. Baksheeva, Andrey A. ZamyatninJr.Jr., Evgeni Yu. Zernii, Vladimir N. Uversky & Eugene A. Permyakov. (2019) Experimental Insight into the Structural and Functional Roles of the ‘Black’ and ‘Gray’ Clusters in Recoverin, a Calcium Binding Protein with Four EF-Hand Motifs. Molecules 24:13, pages 2494.
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Maria E. Permyakova, Sergei E. Permyakov, Alexei S. Kazakov, Alexander I. Denesyuk, Konstantin Denessiouk, Vladimir N. Uversky & Eugene A. Permyakov. (2019) Analyzing the structural and functional roles of residues from the ‘black’ and ‘gray’ clusters of human S100P protein. Cell Calcium 80, pages 46-55.
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Alexander V. Fonin, Olga V. Stepanenko, Asiia K. Sitdikova, Iuliia A. Antifeeva, Elena I. Kostyleva, Alexander M. Polyanichko, Maksim M. Karasev, Sergey A. Silonov, Olga I. Povarova, Irina M. Kuznetsova, Vladimir N. Uversky & Konstantin К. Turoverov. (2019) Folding of poly-amino acids and intrinsically disordered proteins in overcrowded milieu induced by pH change. International Journal of Biological Macromolecules 125, pages 244-255.
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Victor P. Kutyshenko, Galina V. Mikoulinskaia, Sergei V. Chernyshov, Alexander Y. Yegorov, Dmitry A. Prokhorov & Vladimir N. Uversky. (2019) Effect of C-terminal His-tag and purification routine on the activity and structure of the metalloenzyme, l-alanyl-d-glutamate peptidase of the bacteriophage T5. International Journal of Biological Macromolecules 124, pages 810-818.
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Orkid Coskuner-Weber & Vladimir N. Uversky. (2019)
Alanine Scanning Effects on the Biochemical and Biophysical Properties of Intrinsically Disordered Proteins: A Case Study of the Histidine to Alanine Mutations in Amyloid-β
42
. Journal of Chemical Information and Modeling 59:2, pages 871-884.
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Xingcheng Lin, Prakash Kulkarni, Federico Bocci, Nicholas Schafer, Susmita Roy, Min-Yeh Tsai, Yanan He, Yihong Chen, Krithika Rajagopalan, Steven Mooney, Yu Zeng, Keith Weninger, Alex Grishaev, José Onuchic, Herbert Levine, Peter Wolynes, Ravi Salgia, Govindan Rangarajan, Vladimir Uversky, John Orban & Mohit Jolly. (2019) Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level. Biomolecules 9:2, pages 77.
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Vyacheslav M. Abramov, Igor V. Kosarev, Vladimir L. Motin, Valentin S. Khlebnikov, Raisa N. Vasilenko, Vadim K. Sakulin, Andrey V. Machulin, Vladimir N. Uversky & Andrey V. Karlyshev. (2019) Binding of LcrV protein from Yersinia pestis to human T-cells induces apoptosis, which is completely blocked by specific antibodies. International Journal of Biological Macromolecules 122, pages 1062-1070.
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Elrashdy M. Redwan, Abdullah A. AlJaddawi & Vladimir N. Uversky. (2018) Structural disorder in the proteome and interactome of Alkhurma virus (ALKV). Cellular and Molecular Life Sciences 76:3, pages 577-608.
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Yumeng Liu, Xiaolong Wang & Bin Liu. (2019) A comprehensive review and comparison of existing computational methods for intrinsically disordered protein and region prediction. Briefings in Bioinformatics 20:1, pages 330-346.
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Hirak Jyoti Chakraborty, Aditi Gangopadhyay, Sayak Ganguli & Abhijit Datta. 2019. Biotechnology. Biotechnology
156
184
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Alisa A. Vologzhannikova, Polina A. Khorn, Alexei S. Kazakov, Eugene A. Permyakov, Vladimir N. Uversky & Sergei E. Permyakov. (2019) Effects of his-tags on physical properties of parvalbumins. Cell Calcium 77, pages 1-7.
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Akila Katuwawala, Sina Ghadermarzi & Lukasz Kurgan. 2019. Dancing protein clouds: Intrinsically disordered proteins in health and disease, Part A. Dancing protein clouds: Intrinsically disordered proteins in health and disease, Part A
341
369
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Christopher J. Oldfield, Vladimir N. Uversky, A. Keith Dunker & Lukasz Kurgan. 2019. Intrinsically Disordered Proteins. Intrinsically Disordered Proteins
1
34
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Bálint Mészáros, Zsuzsanna Dosztányi, Erzsébet Fichó, Csaba Magyar & István Simon. 2019. Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes. Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes
561
596
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JiaRui Li, Lin Lu, Yu‐Hang Zhang, Min Liu, Lei Chen, Tao Huang & Yu‐Dong Cai. (2018) Identification of synthetic lethality based on a functional network by using machine learning algorithms. Journal of Cellular Biochemistry 120:1, pages 405-416.
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Sergei E. Permyakov, Alisa A. Vologzhannikova, Polina A. Khorn, Marina P. Shevelyova, Alexei S. Kazakov, Victor I. Emelyanenko, Alexander I. Denesyuk, Konstantin Denessiouk, Vladimir N. Uversky & Eugene A. Permyakov. (2018) Comprehensive analysis of the roles of ‘black’ and ‘gray’ clusters in structure and function of rat β-parvalbumin. Cell Calcium 75, pages 64-78.
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Luisa A. Ferreira, Alicyia Walczyk Mooradally, Boris Zaslavsky, Vladimir N. Uversky & Steffen P. Graether. (2018) Effect of an Intrinsically Disordered Plant Stress Protein on the Properties of Water. Biophysical Journal 115:9, pages 1696-1706.
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Tara Basavanhally, Renée Fonseca & Vladimir N. Uversky. (2018) Born This Way: Using Intrinsic Disorder to Map the Connections between SLITRKs, TSHR, and Male Sexual Orientation. PROTEOMICS 18:21-22, pages 1800307.
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Gang Hu, Kui Wang, Jiangning Song, Vladimir N. Uversky & Lukasz Kurgan. (2018) Taxonomic Landscape of the Dark Proteomes: Whole‐Proteome Scale Interplay Between Structural Darkness, Intrinsic Disorder, and Crystallization Propensity. PROTEOMICS 18:21-22, pages 1800243.
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Fanchi Meng & Lukasz Kurgan. (2018) High‐throughput prediction of disordered moonlighting regions in protein sequences. Proteins: Structure, Function, and Bioinformatics 86:10, pages 1097-1110.
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Nina Sanina, Natalia Chopenko, Andrey Mazeika, Ludmila Davydova, Galina Leonova, Anna Stenkova, Vladimir Uversky & Eduard Kostetsky. (2018) Immunogenicity and Protective Activity of a Chimeric Protein Based on the Domain III of the Tick-Borne Encephalitis Virus E Protein and the OmpF Porin of Yersinia pseudotuberculosis Incorporated into the TI-Complex. International Journal of Molecular Sciences 19:10, pages 2988.
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Zhenning Liu, Renjian Zheng, Michael J. Grushko, Vladimir N. Uversky & Thomas V. McDonald. (2018) Functionally Aberrant Mutant KCNQ1 With Intermediate Heterozygous and Homozygous Phenotypes. Canadian Journal of Cardiology 34:9, pages 1174-1184.
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Vasily Golotin, Nina Sanina, Ludmila Davydova, Natalia Chopenko, Andrey Mazeika, Manuel Roig, Valery Shnyrov, Vladimir Uversky & Eduard Kostetsky. (2018) Recombinant Fusion Protein Joining E Protein Domain III of Tick-Borne Encephalitis Virus and HSP70 of Yersinia pseudotuberculosis as an Antigen for the TI-Complexes. Biomolecules 8:3, pages 82.
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Ekaterina A. Litus, Sergei E. Permyakov, Vladimir N. Uversky & Eugene A. Permyakov. (2017) Intrinsically Disordered Regions in Serum Albumin: What Are They For?. Cell Biochemistry and Biophysics 76:1-2, pages 39-57.
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Fanchi Meng, Graeme F. Murray, Lukasz Kurgan & Henry J. Donahue. (2018) Functional and structural characterization of osteocytic MLO-Y4 cell proteins encoded by genes differentially expressed in response to mechanical signals in vitro. Scientific Reports 8:1.
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Ignacio Hugo Castro, Alejandro Ferrari, María Georgina Herrera, Martín Ezequiel Noguera, Lorenzo Maso, Monica Benini, Alessandra Rufini, Roberto Testi, Paola Costantini & Javier Santos. (2018) Biophysical characterisation of the recombinant human frataxin precursor. FEBS Open Bio 8:3, pages 390-405.
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Elrashdy Redwan, Ahmed Al-Hejin, Hussein Almehdar, Abdelrahman Elsaway & Vladimir Uversky. (2018) Prediction of Disordered Regions and Their Roles in the Anti-Pathogenic and Immunomodulatory Functions of Butyrophilins. Molecules 23:2, pages 328.
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Hirak Jyoti Chakraborty, Aditi Gangopadhyay, Sayak Ganguli & Abhijit Datta. 2018. Applying Big Data Analytics in Bioinformatics and Medicine. Applying Big Data Analytics in Bioinformatics and Medicine
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Gang Hu, Zhonghua Wu, Vladimir Uversky & Lukasz Kurgan. (2017) Functional Analysis of Human Hub Proteins and Their Interactors Involved in the Intrinsic Disorder-Enriched Interactions. International Journal of Molecular Sciences 18:12, pages 2761.
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Lilian Varricchio, Mario Falchi, Massimiliano Dall'Ora, Caterina De Benedittis, Alessandra Ruggeri, Vladimir N. Uversky & Anna Rita Migliaccio. (2017) Calreticulin: Challenges Posed by the Intrinsically Disordered Nature of Calreticulin to the Study of Its Function. Frontiers in Cell and Developmental Biology 5.
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Venkata Kuppireddy, Vladimir Uversky, Su Toh, Ming-Chang Tsai, William Beckerson, Catarina Cahill, Brittany Carman & Michael Perlin. (2017) Identification and Initial Characterization of the Effectors of an Anther Smut Fungus and Potential Host Target Proteins. International Journal of Molecular Sciences 18:11, pages 2489.
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Yun Liu, Meiyan Yang, Hua Cheng, Nan Sun, Simu Liu, Shuiming Li, Yong Wang, Yizhi Zheng & Vladimir N. Uversky. (2017) The effect of phosphorylation on the salt-tolerance-related functions of the soybean protein PM18, a member of the group-3 LEA protein family. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1865:11, pages 1291-1303.
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Orkid Coskuner & Vladimir N. Uversky. (2017) BMP-2 and BMP-9 binding specificities with ALK-3 in aqueous solution with dynamics. Journal of Molecular Graphics and Modelling 77, pages 181-188.
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Zhihua Du & Vladimir Uversky. (2017) A Comprehensive Survey of the Roles of Highly Disordered Proteins in Type 2 Diabetes. International Journal of Molecular Sciences 18:10, pages 2010.
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Lei Chen, Yu-Hang Zhang, ShaoPeng Wang, YunHua Zhang, Tao Huang & Yu-Dong Cai. (2017) Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways. PLOS ONE 12:9, pages e0184129.
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Fanchi Meng, Vladimir N. Uversky & Lukasz Kurgan. (2017) Comprehensive review of methods for prediction of intrinsic disorder and its molecular functions. Cellular and Molecular Life Sciences 74:17, pages 3069-3090.
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Gaurav Ghag, Christopher J. Holler, Georgia Taylor, Thomas L. Kukar, Vladimir N. Uversky & Vijayaraghavan Rangachari. (2017) Disulfide bonds and disorder in granulin-3: An unusual handshake between structural stability and plasticity. Protein Science 26:9, pages 1759-1772.
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Vladimir N. Uversky, Nawal Abd El-Baky, Esmail M. El-Fakharany, Amira Sabry, Ehab H. Mattar, Alexey V. Uversky & Elrashdy M. Redwan. (2017) Functionality of intrinsic disorder in tumor necrosis factor-α and its receptors. The FEBS Journal.
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Yun Liu, Jiahui Wu, Nan Sun, Chengjian Tu, Xiaoying Shi, Hua Cheng, Simu Liu, Shuiming Li, Yong Wang, Yizhi Zheng & Vladimir N. Uversky. (2017) Intrinsically Disordered Proteins as Important Players during Desiccation Stress of Soybean Radicles. Journal of Proteome Research 16:7, pages 2393-2409.
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Orkid Coskuner & Vladimir N. Uversky. (2017)
Tyrosine Regulates β-Sheet Structure Formation in Amyloid-β
42
: A New Clustering Algorithm for Disordered Proteins
. Journal of Chemical Information and Modeling 57:6, pages 1342-1358.
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Nikolas Santamaria, Marwa Alhothali, Maria Harreguy Alfonso, Leonid Breydo & Vladimir N. Uversky. (2016) Intrinsic disorder in proteins involved in amyotrophic lateral sclerosis. Cellular and Molecular Life Sciences 74:7, pages 1297-1318.
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Fanchi Meng, Vladimir Uversky & Lukasz Kurgan. (2017) Computational Prediction of Intrinsic Disorder in Proteins. Current Protocols in Protein Science 88:1.
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Zhihua Du & Vladimir N. Uversky. (2017) Functional roles of intrinsic disorder in CRISPR-associated protein Cas9. Molecular BioSystems 13:9, pages 1770-1780.
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Vladimir N. Uversky & Elrashdy M. Redwan. (2017) Erythropoietin and co.: intrinsic structure and functional disorder. Molecular BioSystems 13:1, pages 56-72.
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Vladimir N. Uversky. (2017) Protein intrinsic disorder-based liquid–liquid phase transitions in biological systems: Complex coacervates and membrane-less organelles. Advances in Colloid and Interface Science 239, pages 97-114.
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Svetlana V. Dentovskaya, Mikhail E. Platonov, Tat’yana E. Svetoch, Pavel Kh. Kopylov, Tat’yana I. Kombarova, Sergey A. Ivanov, Rima Z. Shaikhutdinova, Lyubov’ V. Kolombet, Sadhana Chauhan, Vitaly G. Ablamunits, Vladimir L. Motin, Vladimir N. Uversky & Andrey P. Anisimov. (2016) Two Isoforms of Yersinia pestis Plasminogen Activator Pla: Intraspecies Distribution, Intrinsic Disorder Propensity, and Contribution to Virulence. PLOS ONE 11:12, pages e0168089.
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Haitham A. Yacoub, Ahmed M. Elazzazy, Maged M. Mahmoud, Mohamed Nabih Baeshen, Omar A. Al-Maghrabi, Saleh Alkarim, Ekram S. Ahmed, Hussein A. Almehdar & Vladimir N. Uversky. (2016) Chicken cathelicidins as potent intrinsically disordered biocides with antimicrobial activity against infectious pathogens. Developmental & Comparative Immunology 65, pages 8-24.
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Rajanish Giri, Deepak Kumar, Nitin Sharma & Vladimir N. Uversky. (2016) Intrinsically Disordered Side of the Zika Virus Proteome. Frontiers in Cellular and Infection Microbiology 6.
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Victor P. Kutyshenko, Galina V. Mikoulinskaia, Nikolai V. Molochkov, Dmitry A. Prokhorov, Sergei A. Taran & Vladimir N. Uversky. (2016) Structure and dynamics of the retro-form of the bacteriophage T5 endolysin. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1864:10, pages 1281-1291.
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Pavel Kh. Kopylov, Mikhail E. Platonov, Vitaly G. Ablamunits, Tat’yana I. Kombarova, Sergey A. Ivanov, Lidiya A. Kadnikova, Aleksey N. Somov, Svetlana V. Dentovskaya, Vladimir N. Uversky & Andrey P. Anisimov. (2016) Yersinia pestis Caf1 Protein: Effect of Sequence Polymorphism on Intrinsic Disorder Propensity, Serological Cross-Reactivity and Cross-Protectivity of Isoforms. PLOS ONE 11:9, pages e0162308.
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Shelly DeForte & Vladimir Uversky. (2016) Order, Disorder, and Everything in Between. Molecules 21:8, pages 1090.
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Vladimir N. Uversky. (2016) (Intrinsically disordered) splice variants in the proteome: implications for novel drug discovery. Genes & Genomics 38:7, pages 577-594.
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Oscar D. Luna-Martínez, Abraham Vidal-Limón, Miryam I. Villalba-Velázquez, Rosalba Sánchez-Alcalá, Ramón Garduño-Juárez, Vladimir N. Uversky & Baltazar Becerril. (2016) Simple approach for ranking structure determining residues. PeerJ 4, pages e2136.
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Bosko M. Stojanovski, Leonid Breydo, Vladimir N. Uversky & Gloria C. Ferreira. (2016) Murine erythroid 5-aminolevulinate synthase: Truncation of a disordered N-terminal extension is not detrimental for catalysis. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1864:5, pages 441-452.
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Chen Wang, Vladimir N. Uversky & Lukasz Kurgan. (2016) Disordered nucleiome: Abundance of intrinsic disorder in the DNA- and RNA-binding proteins in 1121 species from Eukaryota, Bacteria and Archaea. PROTEOMICS 16:10, pages 1486-1498.
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Olga V. Stepanenko, Denis O. Roginskii, Olesya V. Stepanenko, Irina M. Kuznetsova, Vladimir N. Uversky & Konstantin K. Turoverov. (2016) Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants. PeerJ 4, pages e1933.
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Olga V. Stepanenko, Denis O. Roginskii, Olesya V. Stepanenko, Irina M. Kuznetsova, Vladimir N. Uversky & Konstantin K. Turoverov. (2016) Structure and stability of recombinant bovine odorant-binding protein: II. Unfolding of the monomeric forms. PeerJ 4, pages e1574.
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Haitham A. YacoubSalem M. El-HamidyMaged M. MahmoudMohamed Nabih BaeshenHussein A. AlmehdarVladimir N. UverskyElrashdy M. RedwanOmar A. Al-MaghrabiAhmed M. Elazzazy. (2016) Biocidal activity of chicken defensin-9 against microbial pathogens. Biochemistry and Cell Biology 94:2, pages 176-187.
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Ehab H. Mattar, Hussein A. Almehdar, Haitham A. Yacoub, Vladimir N. Uversky & Elrashdy M. Redwan. (2016) Antimicrobial potentials and structural disorder of human and animal defensins. Cytokine & Growth Factor Reviews 28, pages 95-111.
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Elrashdy M. Redwan, Moustafa H. Linjawi & Vladimir N. Uversky. (2016) Looking at the carcinogenicity of human insulin analogues via the intrinsic disorder prism. Scientific Reports 6:1.
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Insung Na, Fanchi Meng, Lukasz Kurgan & Vladimir N. Uversky. (2016) Autophagy-related intrinsically disordered proteins in intra-nuclear compartments. Molecular BioSystems 12:9, pages 2798-2817.
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Fanchi Meng, Insung Na, Lukasz Kurgan & Vladimir Uversky. (2015) Compartmentalization and Functionality of Nuclear Disorder: Intrinsic Disorder and Protein-Protein Interactions in Intra-Nuclear Compartments. International Journal of Molecular Sciences 17:1, pages 24.
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Nawal Abd El-Baky, Vladimir N. Uversky & Elrashdy M. Redwan. (2015) Human consensus interferons: Bridging the natural and artificial cytokines with intrinsic disorder. Cytokine & Growth Factor Reviews 26:6, pages 637-645.
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Sergei E. Permyakov, Eugene A. Permyakov & Vladimir N. Uversky. (2015) Intrinsically disordered caldesmon binds calmodulin via the “buttons on a string” mechanism. PeerJ 3, pages e1265.
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Zhonghua Wu, Gang Hu, Jianyi Yang, Zhenling Peng, Vladimir N. Uversky & Lukasz Kurgan. (2015) In various protein complexes, disordered protomers have large per-residue surface areas and area of protein-, DNA- and RNA-binding interfaces. FEBS Letters 589:19PartA, pages 2561-2569.
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Fanchi Meng, Reaid A. Badierah, Hussein A. Almehdar, Elrashdy M. Redwan, Lukasz Kurgan & Vladimir N. Uversky. (2015) Unstructural biology of the dengue virus proteins. FEBS Journal 282:17, pages 3368-3394.
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Elrashdy M. Redwan, Hussein A. Almehdar, Esmail M. EL-Fakharany, Abdul-Wahab K. Baig & Vladimir N. Uversky. (2015) Potential antiviral activities of camel, bovine, and human lactoperoxidases against hepatitis C virus genotype 4. RSC Advances 5:74, pages 60441-60452.
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Dmitry A. Prokhorov, Galina V. Mikoulinskaia, Nikolai V. Molochkov, Vladimir N. Uversky & Victor P. Kutyshenko. (2015)
High-resolution NMR structure of a Zn
2+
-containing form of the bacteriophage T5
l
-alanyl-
d
-glutamate peptidase
. RSC Advances 5:51, pages 41041-41049.
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Vladimir N. Uversky, Irina M. Kuznetsova, Konstantin K. Turoverov & Boris Zaslavsky. (2014) Intrinsically disordered proteins as crucial constituents of cellular aqueous two phase systems and coacervates. FEBS Letters 589:1, pages 15-22.
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Jing Yan & Lukasz Kurgan. 2015. Pattern Recognition and Machine Intelligence. Pattern Recognition and Machine Intelligence
501
511
.
Meijing Li, Seong Beom Cho & Keun Ho Ryu. (2014) A Novel Approach for Predicting Disordered Regions in A Protein Sequence. Osong Public Health and Research Perspectives 5:4, pages 211-218.
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