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Articles

Effect of sequential deletion of extra N-terminal residues on the structure and stability of yeast iso-1-cytochrome-c

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Pages 2005-2016 | Received 19 Jul 2013, Accepted 23 Sep 2013, Published online: 20 Nov 2013

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Abdullah Naiyer, Bushra Khan, Asimul Islam, Md. Imtaiyaz Hassan, Monica Sundd & Faizan Ahmad. (2022) Heme-iron ligand (M80-Fe) in cytochrome c is destabilizing: combined in vitro and in silico approaches to monitor changes in structure, stability and dynamics of the protein on mutation. Journal of Biomolecular Structure and Dynamics 40:9, pages 4122-4139.
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Limei He, Rui Zhang, Jidong Shen, Ying Miao, Xianghua Tang, Qian Wu, Junpei Zhou & Zunxi Huang. (2020) Removal of N-terminal tail changes the thermostability of the low-temperature-active exo-inulinase InuAGN25. Bioengineered 11:1, pages 921-931.
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Sobia Zaidi, Md. Anzarul Haque, Shah Ubaid-ullah, Amresh Prakash, Md. Imtaiyaz Hassan, Asimul Islam, Janendra K. Batra & Faizan Ahmad. (2017) Denatured states of yeast cytochrome c induced by heat and guanidinium chloride are structurally and thermodynamically different. Journal of Biomolecular Structure and Dynamics 35:7, pages 1420-1435.
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Danish Idrees, Amresh Prakash, Md. Anzarul Haque, Asimul Islam, Faizan Ahmad & Md. Imtaiyaz Hassan. (2016) Spectroscopic and MD simulation studies on unfolding processes of mitochondrial carbonic anhydrase VA induced by urea. Journal of Biomolecular Structure and Dynamics 34:9, pages 1987-1997.
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Farha Naz, Parvesh Singh, Asimul Islam, Faizan Ahmad & Md. Imtaiyaz Hassan. (2016) Human microtubule affinity-regulating kinase 4 is stable at extremes of pH. Journal of Biomolecular Structure and Dynamics 34:6, pages 1241-1251.
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Abdullah Naiyer, Md. Imtaiyaz Hassan, Asimul Islam, Monica Sundd & Faizan Ahmad. (2015) Structural characterization of MG and pre-MG states of proteins by MD simulations, NMR, and other techniques. Journal of Biomolecular Structure and Dynamics 33:10, pages 2267-2284.
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Md. Anzarul Haque, Sobia Zaidi, Shah Ubaid-ullah, Amresh Prakash, Md. Imtaiyaz Hassan, Asimul Islam, Janendra K. Batra & Faizan Ahmad. (2015) In vitro and in silico studies of urea-induced denaturation of yeast iso-1-cytochrome c and its deletants at pH 6.0 and 25 °C. Journal of Biomolecular Structure and Dynamics 33:7, pages 1493-1502.
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Abdullah Naiyer, Bushra Khan, Afzal Hussain, Asimul Islam, Mohamed F. Alajmi, Md. Imtaiyaz Hassan, Monica Sundd & Faizan Ahmad. (2021) Stability of uniformly labeled (13C and 15N) cytochrome c and its L94G mutant. Scientific Reports 11:1.
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Anupam Banerjee, Amit Kumar, Kushal Kanti Ghosh & Pralay Mitra. (2020) Estimating Change in Foldability Due to Multipoint Deletions in Protein Structures. Journal of Chemical Information and Modeling 60:12, pages 6679-6690.
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Anupam Banerjee, Yaakov Levy & Pralay Mitra. (2019) Analyzing Change in Protein Stability Associated with Single Point Deletions in a Newly Defined Protein Structure Database. Journal of Proteome Research 18:3, pages 1402-1410.
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Sabab Hasan Khan, Amresh Prakash, Preeti Pandey, Andrew M. Lynn, Asimul Islam, Md. Imtaiyaz Hassan & Faizan Ahmad. (2019) Protein folding: Molecular dynamics simulations and in vitro studies for probing mechanism of urea- and guanidinium chloride-induced unfolding of horse cytochrome-c. International Journal of Biological Macromolecules 122, pages 695-704.
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Sabab Hasan Khan, Asimul Islam, Md. Imtaiyaz Hassan, Sujata Sharma, Tej Pal Singh & Faizan Ahmad. (2017) Effect of conservative mutations (L94V and L94I) on the structure and stability of horse cytochrome c. Archives of Biochemistry and Biophysics 633, pages 40-49.
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Sabab Hasan Khan, Atul kumar, Amresh Prakash, Bhupesh Taneja, Asimul Islam, Md. Imtiayaz Hassan & Faizan Ahmad. (2016) Structural and thermodynamic characterisation of L94F mutant of horse cytochrome c. International Journal of Biological Macromolecules 92, pages 202-212.
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Huma NazMohd. ShahbaazKrishna BisettyAsimul IslamFaizan AhmadMd. Imtaiyaz Hassan. (2016) Effect of pH on the structure, function, and stability of human calcium/calmodulin-dependent protein kinase IV: combined spectroscopic and MD simulation studies. Biochemistry and Cell Biology 94:3, pages 221-228.
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Khalid Anwer, Safikur Rahman, Ravi R. Sonani, Faez Iqbal Khan, Asimul Islam, Datta Madamwar, Faizan Ahmad & Md. Imtaiyaz Hassan. (2016) Probing pH sensitivity of αC-phycoerythrin and its natural truncant: A comparative study. International Journal of Biological Macromolecules 86, pages 18-27.
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Mohd Amir, Md. Anzarul Haque, Wahiduzzaman, Mohammad Aasif Dar, Asimul Islam, Faizan Ahmad & Md. Imtaiyaz Hassan. (2016) Purification and characterization of oligonucleotide binding (OB)-fold protein from medicinal plant Tinospora cordifolia. Journal of Chromatography B 1008, pages 38-44.
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Mohd. Amir, Wahiduzzaman, Mohammad Aasif Dar, Md. Anzarul Haque, Asimul Islam, Faizan Ahmad & Md. Imtaiyaz Hassan. (2016) Purification and characterization of Ras related protein, Rab5a from Tinospora cordifolia. International Journal of Biological Macromolecules 82, pages 471-479.
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Faez Iqbal Khan, Krishna Bisetty, Suren Singh, Kugen Permaul & Md. Imtaiyaz Hassan. (2015) Chitinase from Thermomyces lanuginosus SSBP and its biotechnological applications. Extremophiles 19:6, pages 1055-1066.
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Hamidur Rahaman, Md. Khurshid Alam Khan, Md. Imtaiyaz Hassan, Asimul Islam, Ali Akbar Moosavi-Movahedi & Faizan Ahmad. (2015) Heterogeneity of Equilibrium Molten Globule State of Cytochrome c Induced by Weak Salt Denaturants under Physiological Condition. PLOS ONE 10:4, pages e0120465.
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Md. Anzarul Haque, Shah Ubaid-ullah, Sobia Zaidi, Md. Imtaiyaz Hassan, Asimul Islam, Janendra K. Batra & Faizan Ahmad. (2015) Characterization of pre-molten globule state of yeast iso-1-cytochrome c and its deletants at pH 6.0 and 25 °C. International Journal of Biological Macromolecules 72, pages 1406-1418.
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