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Journal of Biomolecular Structure and Dynamics Volume 33, 2015 - Issue 2
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Review Article

Adaptability in protein structures: structural dynamics and implications in ligand design

Atanu MaityBioinformatics Centre, Bose Institute, P-1/12, C.I.T. Scheme VII M, Kolkata700054, India
,
Sarmistha MajumdarBioinformatics Centre, Bose Institute, P-1/12, C.I.T. Scheme VII M, Kolkata700054, India
,
Prerna PriyaBioinformatics Centre, Bose Institute, P-1/12, C.I.T. Scheme VII M, Kolkata700054, India
,
Pallavi DeBioinformatics Centre, Bose Institute, P-1/12, C.I.T. Scheme VII M, Kolkata700054, India
,
Sudipto SahaBioinformatics Centre, Bose Institute, P-1/12, C.I.T. Scheme VII M, Kolkata700054, India
&
Shubhra Ghosh DastidarBioinformatics Centre, Bose Institute, P-1/12, C.I.T. Scheme VII M, Kolkata700054, IndiaCorrespondence[email protected]
Pages 298-321 | Received 15 May 2013, Accepted 04 Dec 2013, Published online: 16 Jan 2014

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A. Mavani, Aben Ovung, Soching Luikham, Gopinatha Suresh Kumar, Abhi Das, Debes Ray, Vinod K. Aswal & Jhimli Bhattacharyya. (2023) Biophysical and molecular modeling evidences for the binding of sulfa molecules with hemoglobin. Journal of Biomolecular Structure and Dynamics 41:9, pages 3779-3790.
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Articles from other publishers (7)

Masayuki Oda. (2023) Analysis of the Structural Dynamics of Proteins in the Ligand-Unbound and -Bound States by Diffracted X-ray Tracking. International Journal of Molecular Sciences 24:18, pages 13717.
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Giulia D’Arrigo, Ida Autiero, Eleonora Gianquinto, Lydia Siragusa, Massimo Baroni, Gabriele Cruciani & Francesca Spyrakis. (2022) Exploring Ligand Binding Domain Dynamics in the NRs Superfamily. International Journal of Molecular Sciences 23:15, pages 8732.
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Aben Ovung, A. Mavani, Ambarnil Ghosh, Sabyasachi Chatterjee, Abhi Das, Gopinatha Suresh Kumar, Debes Ray, Vinod K. Aswal & Jhimli Bhattacharyya. (2022) Heme Protein Binding of Sulfonamide Compounds: A Correlation Study by Spectroscopic, Calorimetric, and Computational Methods. ACS Omega 7:6, pages 4932-4944.
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Atanu Maity, Sarmistha Majumdar & Shubhra Ghosh Dastidar. (2018) Flexibility enables to discriminate between ligands: Lessons from structural ensembles of Bcl-xl and Mcl-1. Computational Biology and Chemistry 77, pages 17-27.
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Stephani Joy Y. Macalino, Shaherin Basith, Nina Abigail B. Clavio, Hyerim Chang, Soosung Kang & Sun Choi. (2018) Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery. Molecules 23:8, pages 1963.
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Alexander Fonin, Alexandra Golikova, Irina Zvereva, Sabato D’Auria, Maria Staiano, Vladimir Uversky, Irina Kuznetsova & Konstantin Turoverov. (2017) Osmolyte-Like Stabilizing Effects of Low GdnHCl Concentrations on d-Glucose/d-Galactose-Binding Protein. International Journal of Molecular Sciences 18:9, pages 2008.
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Prerna Priya, Atanu Maity, Sarmistha Majumdar & Shubhra Ghosh Dastidar. (2015) Interactions between Bcl-xl and its inhibitors: Insights into ligand design from molecular dynamics simulation. Journal of Molecular Graphics and Modelling 59, pages 1-13.
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