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Research Articles

Fragment-based virtual screening approach and molecular dynamics simulation studies for identification of BACE1 inhibitor leads

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Pages 1878-1892 | Received 19 Jan 2017, Accepted 23 May 2017, Published online: 15 Jun 2017

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Kandasamy Saravanan, Magudeeswaran Sivanandam, Govindasamy Hunday, Lakshmanan Mathiyalagan & Poomani Kumaradhas. (2019) Investigation of intermolecular interactions and stability of verubecestat in the active site of BACE1: Development of first model from QM/MM-based charge density and MD analysis. Journal of Biomolecular Structure and Dynamics 37:9, pages 2339-2354.
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Deyse B. Barbosa, Mayra R. do Bomfim, Tiago A. de Oliveira, Alisson M. da Silva, Alex G. Taranto, Jorddy N. Cruz, Paulo B. de Carvalho, Joaquín M. Campos, Cleydson B. R. Santos & Franco H. A. Leite. (2023) Development of Potential Multi-Target Inhibitors for Human Cholinesterases and Beta-Secretase 1: A Computational Approach. Pharmaceuticals 16:12, pages 1657.
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Géssica Oliveira Mendes, Moysés Fagundes de Araújo Neto, Deyse Brito Barbosa, Mayra Ramos do Bomfim, Lorena Silva Matos Andrade, Paulo Batista de Carvalho, Tiago Alves de Oliveira, Daniel Luciano Falkoski, Eduardo Habib Bechelane Maia, Marcelo Siqueira Valle, Laila Cristina Moreira Damázio, Alisson Marques da Silva, Alex Gutterres Taranto & Franco Henrique Andrade Leite. (2023) Identification of Potential Multitarget Compounds against Alzheimer’s Disease through Pharmacophore-Based Virtual Screening. Pharmaceuticals 16:12, pages 1645.
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Géssica Oliveira Mendes, Samuel Silva da Rocha Pita, Paulo Batista de Carvalho, Michel Pires da Silva, Alex Gutterres Taranto & Franco Henrique Andrade Leite. (2023) Molecular Multi-Target Approach for Human Acetylcholinesterase, Butyrylcholinesterase and β-Secretase 1: Next Generation for Alzheimer’s Disease Treatment. Pharmaceuticals 16:6, pages 880.
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Gurmeet Kaur & Bhupesh Goyal. (2022) Deciphering the Molecular Mechanism of Inhibition of β‐Secretase (BACE1) Activity by a 2‐Amino‐imidazol‐4‐one Derivative. ChemistrySelect 7:39.
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Igor José dos Santos Nascimento, Thiago Mendonça de Aquino & Edeildo Ferreira da Silva-Júnior. (2022) Repurposing FDA-approved Drugs Targeting SARS-CoV2 3CL pro : A Study by Applying Virtual Screening, Molecular Dynamics, MM-PBSA Calculations and Covalent Docking . Letters in Drug Design & Discovery 19:7, pages 637-653.
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Hridoy R. Bairagya, Alvea Tasneem, Gyan Prakash Rai & Saima Reyaz. (2021) New biochemical insights into the dynamics of water molecules at the GMP or IMP binding site of human GMPR enzyme: A molecular dynamics study. Proteins: Structure, Function, and Bioinformatics 90:1, pages 200-217.
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Saima Reyaz, Alvea Tasneem, Gyan Prakash Rai & Hridoy R. Bairagya. (2021) Investigation of structural analogs of hydroxychloroquine for SARS-CoV-2 main protease (Mpro): A computational drug discovery study. Journal of Molecular Graphics and Modelling 109, pages 108021.
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Hridoy R. Bairagya, Alvea Tasneem, Gyan Prakash Rai & Saima Reyaz. (2020) Structural and Dynamical Impact of Water Molecules at Substrate- or Product-Binding Sites in Human GMPR Enzyme: A Study by Molecular Dynamics Simulations. The Journal of Physical Chemistry B 125:5, pages 1351-1362.
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Simranjeet Singh Narang, Deepti Goyal & Bhupesh Goyal. (2019) Molecular insights into the inhibitory mechanism of bi-functional bis-tryptoline triazole against β-secretase (BACE1) enzyme. Amino Acids 51:10-12, pages 1593-1607.
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Chung-Hang Leung, Jia-Tong Zhang, Guan-Jun Yang, Hao Liu, Quan-Bin Han & Dik-Lung Ma. (2019) Emerging Screening Approaches in the Development of Nrf2–Keap1 Protein–Protein Interaction Inhibitors. International Journal of Molecular Sciences 20:18, pages 4445.
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Kandasamy Saravanan & Poomani Kumaradhas. (2019) Acylguanidine-BACE1 complex: Insights of intermolecular interactions and dynamics. Journal of Theoretical Biology 464, pages 33-49.
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Sidra Khalid, Muhammad Ammar Zahid, Hussain Ali, Yeong S. Kim & Salman Khan. (2018) Biaryl scaffold-focused virtual screening for anti-aggregatory and neuroprotective effects in Alzheimer’s disease. BMC Neuroscience 19:1.
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