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Journal of Biomolecular Structure and Dynamics Volume 39, 2021 - Issue 1
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Research Articles

Structural heterogeneity in RNA recognition motif 2 (RRM2) of TAR DNA-binding protein 43 (TDP-43): clue to amyotrophic lateral sclerosis

Amresh PrakashAmity Institute of Integrative Sciences and Health, Amity University, Gurgaon, India; Correspondence[email protected]
ORCID Iconhttp://orcid.org/0000-0002-4821-1654View further author information
ORCID Icon,
Vijay KumarAmity Institute of Neuropsychology & Neurosciences, Amity University, Noida, India; Correspondence[email protected]
ORCID Iconhttp://orcid.org/0000-0002-3621-5025View further author information
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Atanu BanerjeeAmity Institute of Integrative Sciences and Health, Amity University, Gurgaon, India; View further author information
,
Andrew M. LynnSchool of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India; View further author information
&
Rajendra PrasadAmity Institute of Biotechnology, Amity University, Gurgaon, IndiaView further author information
Pages 357-367 | Received 13 Sep 2019, Accepted 23 Dec 2019, Published online: 22 Jan 2020

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Shafiul Haque, Pawan Kumar, Darin Mansor Mathkor, Farkad Bantun, Naif A. Jalal, Ahmad Hasan Mufti, Amresh Prakash & Vijay Kumar. (2023) In silico evaluation of the inhibitory potential of nucleocapsid inhibitors of SARS-CoV-2: a binding and energetic perspective. Journal of Biomolecular Structure and Dynamics 41:19, pages 9797-9807.
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Abhibhav Sharma & Pinki Dey. (2023) Novel insights into the structural changes induced by disease-associated mutations in TDP-43: a computational approach. Journal of Biomolecular Structure and Dynamics 41:12, pages 5624-5634.
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Unnati Soni, Anirudh Singh, Ramendra Soni, Sintu Kumar Samanta, Pritish Kumar Varadwaj & Krishna Misra. (2023) Identification of candidate target genes of oral squamous cell carcinoma using high-throughput RNA-Seq data and in silico studies of their interaction with naturally occurring bioactive compounds. Journal of Biomolecular Structure and Dynamics 0:0, pages 1-21.
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M. Shivapriya Pingali, Anirudh Singh, Vishal Singh, Amaresh Kumar Sahoo, Pritish Kumar Varadwaj & Sintu Kumar Samanta. (2023) Docking and molecular dynamics simulation for therapeutic repurposing in small cell lung cancer (SCLC) patients infected with COVID-19. Journal of Biomolecular Structure and Dynamics 41:1, pages 16-25.
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Peng Yin, Dazhang Bai, Fuyu Deng, Chen Zhang, Qingqing Jia, Longhong Zhu, Laiqiang Chen, Bang Li, Xiangyu Guo, Jianmeng Ye, Zhiqiang Tan, Lu Wang, Shihua Li & Xiao-Jiang Li. (2022) SQSTM1-mediated clearance of cytoplasmic mutant TARDBP/TDP-43 in the monkey brain. Autophagy 18:8, pages 1955-1968.
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Articles from other publishers (8)

Yuan Tan, Yujie Chen, Xianshi Liu, Yiming Tang, Zenghui Lao & Guanghong Wei. (2023) Dissecting how ALS-associated D290V mutation enhances pathogenic aggregation of hnRNPA2286–291 peptides: Dynamics and conformational ensembles. International Journal of Biological Macromolecules, pages 124659.
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Yan-Zhe Liao, Jing Ma & Jie-Zhi Dou. (2022) The Role of TDP-43 in Neurodegenerative Disease. Molecular Neurobiology 59:7, pages 4223-4241.
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Ruiting Li, Ruhar Singh, Tara Kashav, ChunMin Yang, Ravi Datta Sharma, Andrew M. Lynn, Rajendra Prasad, Amresh Prakash & Vijay Kumar. (2022) Computational Insights of Unfolding of N-Terminal Domain of TDP-43 Reveal the Conformational Heterogeneity in the Unfolding Pathway. Frontiers in Molecular Neuroscience 15.
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Mohd Maksuf Ul Haque, Md Sheeraz Anwar, Md Zubbair Malik, R.K. Brojen Singh, Nidhi Verma & Saurabh Kumar Sharma. 2022. TDP-43 and Neurodegeneration. TDP-43 and Neurodegeneration 135 151 .
Kartikay Prasad, Shahzaib Ahamad, Dinesh Gupta & Vijay Kumar. (2021) Targeting cathepsins: A potential link between COVID-19 and associated neurological manifestations. Heliyon 7:10, pages e08089.
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Xiongfei Tian, Ling Shen, Zhenwu Wang, Liqian Zhou & Lihong Peng. (2021) A novel lncRNA–protein interaction prediction method based on deep forest with cascade forest structure. Scientific Reports 11:1.
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Kartikay Prasad, Shahzaib Ahamad, Hema Kanipakam, Dinesh Gupta & Vijay Kumar. (2021) Simultaneous Inhibition of SARS-CoV-2 Entry Pathways by Cyclosporine. ACS Chemical Neuroscience 12:5, pages 930-944.
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Preeti Pandey, Kartikay Prasad, Amresh Prakash & Vijay Kumar. (2020) Insights into the biased activity of dextromethorphan and haloperidol towards SARS-CoV-2 NSP6: in silico binding mechanistic analysis. Journal of Molecular Medicine 98:12, pages 1659-1673.
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