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Maria Arnittali, Anastassia N. Rissanou, Aikaterini Kefala, Michael Kokkinidis & Vagelis Harmandaris. (2023) Structure of amino acid sequence-reversed wtRop protein: insights from atomistic molecular dynamics simulations. Journal of Biomolecular Structure and Dynamics 0:0, pages 1-15.
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Felipe Rocha da Silva Santos, Marcela Santiago Pacheco de Azevedo, Monica Bielavsky, Hernan Hermes Monteiro da Costa, Daniela Gomes Ribeiro, Gleidson Guedes do Nascimento, Gabrielle Menezes Paz Marcondes, Beatriz Portugal de Castro, Daniel Ferreira de Lima Neto & Carlos Roberto Prudencio. (2022) Mutational profile confers increased stability of SARS-CoV-2 spike protein in Brazilian isolates. Journal of Biomolecular Structure and Dynamics 40:23, pages 13184-13189.
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Chengcheng Shi, Yanqi Jiao, Chao Yang & Yao Sun. (2023) The influence of single-point mutation D614G on the binding process between human angiotensin-converting enzyme 2 and the SARS-CoV-2 spike protein-an atomistic simulation study. RSC Advances 13:15, pages 9800-9810.
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Mohammad Hadi Abbasian, Mohammadamin Mahmanzar, Karim Rahimian, Bahar Mahdavi, Samaneh Tokhanbigli, Bahman Moradi, Mahsa Mollapour Sisakht & Youping Deng. (2023) Global landscape of SARS-CoV-2 mutations and conserved regions. Journal of Translational Medicine 21:1.
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Mozhgan Mondeali, Ali Etemadi, Khabat Barkhordari, Mina Mobini Kesheh, Sara Shavandi, Atefeh Bahavar, Fatemeh Hosseini Tabatabaie, Mohammad Mahmoudi Gomari & Mohammad H. Modarressi. (2023) The role of S477N mutation in the molecular behavior of SARS‐CoV‐2 spike protein: An in‐silico perspective. Journal of Cellular Biochemistry 124:2, pages 308-319.
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Mohammad Mahmoudi Gomari, Neda Rostami, Davood Rabiei Faradonbeh, Hamid Reza Asemaneh, Giti Esmailnia, Shahriar Arab, Marziye Farsimadan, Arshad Hosseini & Nikolay V. Dokholyan. (2022) Evaluation of pH change effects on the HSA folding and its drug binding characteristics, a computational biology investigation. Proteins: Structure, Function, and Bioinformatics 90:11, pages 1908-1925.
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Neda Rostami & Reza Davarnejad. (2021) Characterization of folic acid‐functionalized PLA–PEG nanomicelle to deliver Letrozole: A nanoinformatics study. IET Nanobiotechnology 16:4, pages 103-114.
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Cédric Hartard, Ahlam Chaqroun, Nicla Settembre, Guillaume Gauchotte, Benjamin Lefevre, Elodie Marchand, Charles Mazeaud, Duc Trung Nguyen, Laurent Martrille, Isabelle Koscinski, Sergueï Malikov & Evelyne Schvoerer. (2022) Multiorgan and Vascular Tropism of SARS-CoV-2. Viruses 14:3, pages 515.
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Vincenzo Tragni, Francesca Preziusi, Luna Laera, Angelo Onofrio, Ivan Mercurio, Simona Todisco, Mariateresa Volpicella, Anna De Grassi & Ciro Leonardo Pierri. (2022) Modeling SARS-CoV-2 spike/ACE2 protein–protein interactions for predicting the binding affinity of new spike variants for ACE2, and novel ACE2 structurally related human protein targets, for COVID-19 handling in the 3PM context. EPMA Journal 13:1, pages 149-175.
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Neda Rostami, Edris Choupani, Yaeren Hernandez, Seyed S. Arab, Seyed M. Jazayeri & Mohammad M. Gomari. (2021) SARS‐CoV‐2 spike evolutionary behaviors; simulation of N501Y mutation outcomes in terms of immunogenicity and structural characteristic. Journal of Cellular Biochemistry 123:2, pages 417-430.
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Manojit Bhattacharya, Srijan Chatterjee, Ashish Ranjan Sharma, Govindasamy Agoramoorthy & Chiranjib Chakraborty. (2021) D614G mutation and SARS-CoV-2: impact on S-protein structure, function, infectivity, and immunity. Applied Microbiology and Biotechnology 105:24, pages 9035-9045.
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Mohammad Mahmoudi Gomari, Neda Rostami, Atefe Ghodrati, Yaeren Hernandez, Mahmood Fadaie, Seyed Sadegh Eslami & Parastoo Tarighi. (2021) Implementation of docking, molecular dynamics and free energy to investigate drug potency of novel BCR-ABLT315I inhibitors as an alternative to ponatinib. Computational Toxicology 20, pages 100180.
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Michael H. Peters, Oscar Bastidas, Daniel S. Kokron & Christopher E. Henze. (2021) Transformations, Lineage Comparisons, and Analysis of Down-to-Up Protomer States of Variants of the SARS-CoV-2 Prefusion Spike Protein, Including the UK Variant B.1.1.7. Microbiology Spectrum 9:1.
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Eun Lee & Soo-Jong Hong. (2021) The microbiome in atopic patients and potential modifications in the context of the severe acute respiratory syndrome coronavirus 2 pandemic. Current Opinion in Allergy & Clinical Immunology 21:3, pages 245-251.
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