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Crystallography Reviews Volume 25, 2019 - Issue 3
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Review

Introduction to crystallographic refinement of macromolecular atomic models

Alexandre G. UrzhumtsevCentre for Integrative Biology, IGBMC, CNRS–INSERM–UdS, Illkirch, France;Département de Physique, Faculté des Sciences et des Technologies, Université de Lorraine, Vandoeuvre-lès-Nancy, FranceCorrespondence[email protected]
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Vladimir Y. LuninInstitute of Mathematical Problems of Biology RAS, Keldysh Institute of Applied Mathematics of Russian Academy of Sciences, Pushchino, RussiaView further author information
Pages 164-262 | Received 13 Feb 2019, Accepted 11 Jun 2019, Published online: 12 Jul 2019

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Petra Bombicz. (2020) The Definitive Hitchhiker's Guide to Pathological Macromolecular Crystals Editorial for Crystallography Reviews, Issue 1 of 2020 . Crystallography Reviews 26:1, pages 1-2.
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Alexandre G. Urzhumtsev & Vladimir Y. Lunin. (2020) Introduction to crystallographic refinement of macromolecular atomic models. Addendum. Crystallography Reviews 26:1, pages 51-55.
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Articles from other publishers (14)

Pavel V. Afonine, Oleg V. Sobolev, Nigel W. Moriarty, Thomas C. Terwilliger & Paul D. Adams. (2023) Overall protein structure quality assessment using hydrogen-bonding parameters. Acta Crystallographica Section D Structural Biology 79:8, pages 684-693.
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Ludmila Urzhumtseva, Vladimir Lunin & Alexandre Urzhumtsev. (2023) Algorithms and programs for the shell decomposition of oscillating functions in space. Journal of Applied Crystallography 56:1, pages 302-311.
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Vladimir Y. Lunin, Natalia L. Lunina & Alexandre G. Urzhumtsev. (2023) Local heterogeneity analysis of crystallographic and cryo-EM maps using shell-approximation. Current Research in Structural Biology 6, pages 100102.
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Alexandre G. Urzhumtsev, Ludmila M. Urzhumtseva & Vladimir Y. Lunin. (2022) Direct calculation of cryo-EM and crystallographic model maps for real-space refinement. Acta Crystallographica Section D Structural Biology 78:12, pages 1451-1468.
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Alok Bharadwaj & Arjen J. Jakobi. (2022) Electron scattering properties of biological macromolecules and their use for cryo-EM map sharpening. Faraday Discussions 240, pages 168-183.
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Isabel Usón. (2022) Making ripples in the comparison of calculated and experimental maps for real-space refinement and assessment by analytic modelling of local resolution. IUCrJ 9:6, pages 718-719.
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Alexandre Urzhumtsev & Vladimir Y. Lunin. (2022) Analytic modeling of inhomogeneous-resolution maps in cryo-electron microscopy and crystallography. IUCrJ 9:6, pages 728-734.
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Alexandre G. Urzhumtsev & Vladimir Y. Lunin. (2022) Toward Real Real-Space Refinement of Atomic Models. International Journal of Molecular Sciences 23:20, pages 12101.
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Oleg Mikhailovskii, Yi Xue & Nikolai R. Skrynnikov. (2021) Modeling a unit cell: crystallographic refinement procedure using the biomolecular MD simulation platform Amber . IUCrJ 9:1, pages 114-133.
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John R. Helliwell. 2022. Data Mining Techniques for the Life Sciences. Data Mining Techniques for the Life Sciences 235 261 .
Pietro Roversi & Dale E. Tronrud. (2021) Ten things I `hate' about refinement. Acta Crystallographica Section D Structural Biology 77:12, pages 1497-1515.
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Vladimir Y. Lunin. (2021) On the suitability of using the diagonal Gaussian approximation in the calculation of the magnitude-based likelihood function. Acta Crystallographica Section D Structural Biology 77:5, pages 663-673.
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T.E. Petrova & V.Y. Lunin. (2020) Determination of the Structure of Biological Macromolecular Particles Using X-Ray Lasers. Achievements and Prospects. Mathematical Biology and Bioinformatics 15:2, pages 195-234.
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V.Y. Lunin, N.L. Lunina & T.E. Petrova. (2019) Single Particle Study by X-Ray Diffraction: Crystallographic Approach. Mathematical Biology and Bioinformatics 14:2, pages 500-516.
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