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Molecular Simulation Volume 39, 2013 - Issue 14-15: Monte Carlo Codes, Tools and Algorithms
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Articles

Faunus – a flexible framework for Monte Carlo simulation

Björn StenqvistDepartment of Theoretical Chemistry, Lund University, POB 124, SE-22100, Lund, Sweden
,
Axel ThuressonDepartment of Theoretical Chemistry, Lund University, POB 124, SE-22100, Lund, Sweden
,
Anıl KurutDepartment of Theoretical Chemistry, Lund University, POB 124, SE-22100, Lund, Sweden
,
Robert VáchaNational Centre for Biomolecular Research, Faculty of Science and CEITEC – Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic
&
Mikael LundDepartment of Theoretical Chemistry, Lund University, POB 124, SE-22100, Lund, SwedenCorrespondence[email protected]
Pages 1233-1239 | Received 28 Mar 2013, Accepted 18 Jul 2013, Published online: 16 Sep 2013

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Martin B. Sweatman. (2013) Preface to the special issue on ‘Monte Carlo Codes, Tools and Algorithms’. Molecular Simulation 39:14-15, pages 1123-1124.
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Marco Polimeni, Coralie Pasquier & Mikael Lund. (2021) Virtual cell model for osmotic pressure calculation of charged biomolecules. The Journal of Chemical Physics 155:19.
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Kristin Hyltegren, Marco Polimeni, Marie Skepö & Mikael Lund. (2020) Integrating All-Atom and Coarse-Grained Simulations—Toward Understanding of IDPs at Surfaces. Journal of Chemical Theory and Computation 16:3, pages 1843-1853.
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Kristin Hyltegren, Mats Hulander, Martin Andersson & Marie Skepö. (2020) Adsorption of Fibrinogen on Silica Surfaces—The Effect of Attached Nanoparticles. Biomolecules 10:3, pages 413.
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Björn Stenqvist & Mikael Lund. (2019) On short-ranged pair-potentials for long-range electrostatics. Physical Chemistry Chemical Physics 21:44, pages 24787-24792.
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Björn Stenqvist, Martin Trulsson & Jérôme J. Crassous. (2019) Modeling the assembly of oppositely charged lock- and key-colloids. Soft Matter 15:26, pages 5234-5242.
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Fernando Luís Barroso da Silva, Fabio Sterpone & Philippe Derreumaux. (2019) OPEP6: A New Constant-pH Molecular Dynamics Simulation Scheme with OPEP Coarse-Grained Force Field. Journal of Chemical Theory and Computation 15:6, pages 3875-3888.
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Giulio Tesei, Mario Vazdar & Mikael Lund. (2018) Coarse-grained model of titrating peptides interacting with lipid bilayers. The Journal of Chemical Physics 149:24.
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B. Stenqvist & M. Lund. (2018) Replicate or alternate? Isotropic boundary conditions and implications for Ewald summation. EPL (Europhysics Letters) 123:1, pages 10003.
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Alexei I. Abrikosov, Björn Stenqvist & Mikael Lund. (2017) Steering patchy particles using multivalent electrolytes. Soft Matter 13:26, pages 4591-4597.
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Shuji Kaieda, Mikael Lund, Tomás S. Plivelic & Bertil Halle. (2014) Weak Self-Interactions of Globular Proteins Studied by Small-Angle X-ray Scattering and Structure-Based Modeling. The Journal of Physical Chemistry B 118:34, pages 10111-10119.
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