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Molecular Simulation Volume 41, 2015 - Issue 10-12: Proceedings of the 3rd International Conference on Molecular Simulation
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Proceedings of the 3rd International Conference on Molecular Simulation

Replica-exchange molecular dynamics simulation for understanding the initial process of amyloid peptide aggregation

Naohiro NishikawaDepartment of Physics, Graduate School of Science, Nagoya University, Nagoya, Aichi464-8602, JapanCorrespondence[email protected]
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Phuong H. NguyenLaboratoire de Biochimie Théorique, UPR 9080, CNRS Université Denis Diderot, Sorbonne Paris Cité IBPC, 13 rue Pierre et Marie Curie, 75005Paris, FranceView further author information
,
Philippe DerreumauxLaboratoire de Biochimie Théorique, UPR 9080, CNRS Université Denis Diderot, Sorbonne Paris Cité IBPC, 13 rue Pierre et Marie Curie, 75005Paris, FranceView further author information
&
Yuko OkamotoDepartment of Physics, Graduate School of Science, Nagoya University, Nagoya, Aichi464-8602, Japan;Structural Biology Research Center, Graduate School of Science, Nagoya University, Nagoya, Aichi464-8602, Japan;Center for Computational Science, Graduate School of Engineering, Nagoya University, Nagoya, Aichi464-8603, Japan;Information Technology Center, Nagoya University, Nagoya, Aichi464-8601, JapanView further author information
Pages 1041-1044 | Received 29 May 2014, Accepted 20 Jun 2014, Published online: 15 Sep 2014

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Naohiro Nishikawa, Yoshitake Sakae, Takuya Gouda, Yuichiro Tsujimura & Yuko Okamoto. (2017) Two major stable structures of amyloid-forming peptides: amorphous aggregates and amyloid fibrils. Molecular Simulation 43:13-16, pages 1370-1376.
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Articles from other publishers (6)

Abhilash Sahoo & Silvina Matysiak. (2021) Effects of applied surface-tension on membrane-assisted Aβ aggregation. Physical Chemistry Chemical Physics 23:36, pages 20627-20633.
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Saikat Pal & Sandip Paul. (2019) ATP Controls the Aggregation of Aβ 16–22 Peptides . The Journal of Physical Chemistry B 124:1, pages 210-223.
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Hamid R. Kalhor & Mohammadparsa Jabbary. (2019) Investigating Reliable Conditions for HEWL as an Amyloid Model in Computational Studies and Drug Interactions. Journal of Chemical Information and Modeling 59:12, pages 5218-5229.
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Abhilash Sahoo, Hongcheng Xu & Silvina Matysiak. (2019) Pathways of amyloid-beta absorption and aggregation in a membranous environment. Physical Chemistry Chemical Physics 21:16, pages 8559-8568.
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Naohiro Nishikawa, Yoshitake Sakae, Takuya Gouda, Yuichiro Tsujimura & Yuko Okamoto. (2019) Structural Analysis of a Trimer of β2-Microgloblin Fragment by Molecular Dynamics Simulations. Biophysical Journal 116:5, pages 781-790.
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A. Lampel, R. V. Ulijn & T. Tuttle. (2018) Guiding principles for peptide nanotechnology through directed discovery. Chemical Society Reviews 47:10, pages 3737-3758.
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