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Victor DeGruttola, Ravi Goyal, Natasha K Martin & Rui Wang. (2022) Network methods and design of randomized trials: Application to investigation of COVID-19 vaccination boosters. Clinical Trials 19:4, pages 363-374.
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Andrey K. ShevchenkoDaria V. ZhernakovaSergey V. Malov, Alexey KomissarovSofia M. Kolchanova, Gaik TamazianAlexey AntonikNikolay CherkasovSergey KliverAnastasiia TurenkoMikhail RotkevichIgor Evsyukov, David Vlahov, Prisca K. ThamiSimani GaseitsiweVladimir NovitskyMyron EssexStephen J. O’Brien. (2021) Genome-wide association study reveals genetic variants associated with HIV-1C infection in a Botswana study population. Proceedings of the National Academy of Sciences 118:47.
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Doty B. A. Ojwach, Daniel MacMillan, Tarylee Reddy, Vladimir Novitsky, Zabrina L. Brumme, Mark A. Brockman, Thumbi Ndung'u & Jaclyn K. Mann. (2018) Pol-Driven Replicative Capacity Impacts Disease Progression in HIV-1 Subtype C Infection. Journal of Virology 92:19.
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Wen XieDenis AgnielAndrey ShevchenkoSergey V. MalovAnton SvitinNikolay CherkasovMarianna K. BaumAdriana CampaSimani GaseitsiweHermann BussmannJoseph MakhemaRichard MarlinkVladimir NovitskyTun-Hou LeeTianxi CaiStephen J. O'BrienM. Essex. (2017) Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa. AIDS Research and Human Retroviruses 33:6, pages 597-609.
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Sikhulile Moyo, Eduan Wilkinson, Alain Vandormael, Rui Wang, Jia Weng, Kenanao P. Kotokwe, Simani Gaseitsiwe, Rosemary Musonda, Joseph Makhema, Max Essex, Susan Engelbrecht, Tulio de Oliveira & Vladimir Novitsky. (2017) Pairwise diversity and tMRCA as potential markers for HIV infection recency. Medicine 96:6, pages e6041.
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Vlad Novitsky, Sikhulile Moyo, Rui Wang, Simani Gaseitsiwe & M. Essex. (2016) Deciphering Multiplicity of HIV-1C Infection: Transmission of Closely Related Multiple Viral Lineages. PLOS ONE 11:11, pages e0166746.
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Raabya RossenkhanIain J. MacLeodZabrina L. BrummeCraig A. MagaretTheresa K. SebunyaRosemary MusondaBerhanu A. GashePaul T. EdlefsenVlad NovitskyM. Essex. (2016) Transmitted/Founder HIV-1 Subtype C Viruses Show Distinctive Signature Patterns in Vif, Vpr, and Vpu That Are Under Subsequent Immune Pressure During Early Infection. AIDS Research and Human Retroviruses 32:10-11, pages 1031-1045.
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Sikhulile Moyo, Alain Vandormael, Eduan Wilkinson, Susan Engelbrecht, Simani Gaseitsiwe, Kenanao P. Kotokwe, Rosemary Musonda, Frank Tanser, Max Essex, Vladimir Novitsky & Tulio de Oliveira. (2016) Analysis of Viral Diversity in Relation to the Recency of HIV-1C Infection in Botswana. PLOS ONE 11:8, pages e0160649.
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Clement Zeh, Seth C. Inzaule, Pascale Ondoa, Lillian G. Nafisa, Alex Kasembeli, Fredrick Otieno, Hilde Vandenhoudt, Pauli N. Amornkul, Lisa A. Mills & John N. Nkengasong. (2016) Molecular Epidemiology and Transmission Dynamics of Recent and Long-Term HIV-1 Infections in Rural Western Kenya. PLOS ONE 11:2, pages e0147436.
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Vlad Novitsky, Denise Kühnert, Sikhulile Moyo, Erik Widenfelt, Lillian Okui & M. Essex. (2015) Phylodynamic analysis of HIV sub-epidemics in Mochudi, Botswana. Epidemics 13, pages 44-55.
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Julia Wei Wu, Oscar Patterson-Lomba, Vladimir Novitsky & Marcello Pagano. (2015) A Generalized Entropy Measure of Within-Host Viral Diversity for Identifying Recent HIV-1 Infections. Medicine 94:42, pages e1865.
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Rui Wang, Ravi Goyal, Quanhong Lei, M Essex & Victor De Gruttola. (2014) Sample size considerations in the design of cluster randomized trials of combination HIV prevention. Clinical Trials 11:3, pages 309-318.
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Stéphane Helleringer, James Mkandawire, Linda Kalilani-Phiri & Hans-Peter Kohler. (2014) Cohort Profile: The Likoma Network Study (LNS). International Journal of Epidemiology 43:2, pages 545-557.
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Vladimir Novitsky, Hermann Bussmann, Andrew Logan, Sikhulile Moyo, Erik van Widenfelt, Lillian Okui, Mompati Mmalane, Jeannie Baca, Lauren Buck, Eleanor Phillips, David Tim, Mary Fran McLane, Quanhong Lei, Rui Wang, Joseph Makhema, Shahin Lockman, Victor DeGruttola & M. Essex. (2013) Phylogenetic Relatedness of Circulating HIV-1C Variants in Mochudi, Botswana. PLoS ONE 8:12, pages e80589.
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Vlad Novitsky, Rui Wang, Raabya Rossenkhan, Sikhulile Moyo & M. Essex. (2013) Intra-host evolutionary rates in HIV-1C env and gag during primary infection. Infection, Genetics and Evolution 19, pages 361-368.
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Raabya Rossenkhan, Iain J. MacLeod, Theresa K. Sebunya, Eduardo Castro-Nallar, Mary Fran McLane, Rosemary Musonda, Berhanu A. Gashe, Vlad Novitsky & M. Essex. (2013)
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Exon 1 Exhibits Functional Diversity during HIV-1 Subtype C Primary Infection
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Vladimir Novitsky, Rui Wang, Jeannie Baca, Lauren Margolin, Mary F. McLane, Sikhulile Moyo, Erik van Widenfelt, Joseph Makhema & M. Essex. (2011) Evolutionary gamut of in vivo Gag substitutions during early HIV-1 subtype C infection. Virology 421:2, pages 119-128.
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Vladimir Novitsky, Thumbi Ndung’u, Rui Wang, Hermann Bussmann, Fundisiwe Chonco, Joseph Makhema, Victor De Gruttola, Bruce D. Walker & M. Essex. (2011) Extended high viremics. AIDS 25:12, pages 1515-1522.
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Nguyen Thi Thu Hong, Mitchell I. Wolfe, Tran Tien Dat, Deborah A. McFarland, Mary L. Kamb, Nguyen Trong Thang, Hoang Nam Thai & Carlos Del Rio. (2011) Utilization of HIV Voluntary Counseling and Testing in Vietnam: An Evaluation of 5 Years of Routine Program Data for National Response. AIDS Education and Prevention 23:3_supplement, pages 30-48.
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Vladimir Novitsky, Rui Wang, Lauren Margolin, Jeannie Baca, Raabya Rossenkhan, Sikhulile Moyo, Erik van Widenfelt & M. Essex. (2011) Transmission of Single and Multiple Viral Variants in Primary HIV-1 Subtype C Infection. PLoS ONE 6:2, pages e16714.
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ABM Kharsany, N Hancock, JA Frohlich, HR Humphries, SS Abdool Karim & Q Abdool Karim. (2010) Screening for ‘window‐period’ acute HIV infection among pregnant women in rural South Africa. HIV Medicine 11:10, pages 661-665.
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Vladimir Novitsky, Rui Wang, Lauren Margolin, Jeannie Baca, Sikhulile Moyo, Rosemary Musonda & M. Essex. (2010) Dynamics and timing of in vivo mutations at Gag residue 242 during primary HIV-1 subtype C infection. Virology 403:1, pages 37-46.
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Vladimir Novitsky, Rui Wang, Lauren Margolin, Jeannie Baca, Lemme Kebaabetswe, Raabya Rossenkhan, Caitlin Bonney, Michaela Herzig, David Nkwe, Sikhulile Moyo, Rosemary Musonda, Elias Woldegabriel, Erik van Widenfelt, Joseph Makhema, Stephen Lagakos & M. Essex. (2009) Timing Constraints of In Vivo Gag Mutations during Primary HIV-1 Subtype C Infection. PLoS ONE 4:11, pages e7727.
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Vladimir Novitsky, Rui Wang, Lemme Kebaabetswe, Jamieson Greenwald, Raabya Rossenkhan, Sikhulile Moyo, Rosemary Musonda, Elias Woldegabriel, Stephen Lagakos & M Essex. (2009) Better Control of Early Viral Replication Is Associated With Slower Rate of Elicited Antiviral Antibodies in the Detuned Enzyme Immunoassay During Primary HIV-1C Infection. JAIDS Journal of Acquired Immune Deficiency Syndromes 52:2, pages 265-272.
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Vladimir Novitsky, Elias Woldegabriel, Lemme Kebaabetswe, Raabya Rossenkhan, Busisiwe Mlotshwa, Caitlin Bonney, Mariel Finucane, Rosemary Musonda, Sikhulile Moyo, Carolyn Wester, Erik van Widenfelt, Joseph Makhema, Stephen Lagakos & M Essex. (2009) Viral Load and CD4+ T-Cell Dynamics in Primary HIV-1 Subtype C Infection. JAIDS Journal of Acquired Immune Deficiency Syndromes 50:1, pages 65-76.
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Vladimir Novitsky, Stephen Lagakos, Michaela Herzig, Caitlin Bonney, Lemme Kebaabetswe, Raabya Rossenkhan, David Nkwe, Lauren Margolin, Rosemary Musonda, Sikhulile Moyo, Elias Woldegabriel, Erik van Widenfelt, Joseph Makhema & M. Essex. (2009) Evolution of proviral gp120 over the first year of HIV-1 subtype C infection. Virology 383:1, pages 47-59.
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