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Research Article

Secondary radical attack on DNA nucleotides: reaction by addition to DNA bases and abstraction from sugars

Pages 387-399 | Published online: 03 Jul 2009

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Amitava Adhikary, Anil Kumar, Brian J. Palmer, Andrew D. Todd, Alicia N. Heizer & Michael D. Sevilla. (2014) Reactions of 5-methylcytosine cation radicals in DNA and model systems: Thermal deprotonation from the 5-methyl group vs. excited state deprotonation from sugar. International Journal of Radiation Biology 90:6, pages 433-445.
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Swarnadeep Biswas, Pramod Kumar Shah & P. K. Shukla. (2018) Methylation of DNA bases by methyl free radicals: mechanism of formation of C8-methylguanine. Structural Chemistry 29:5, pages 1333-1340.
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Shoushan Wang, Min Zhang, Peng Liu, Shilei Xie, Faliang Cheng & Lishi Wang. (2017) Formation of pyrimidine–pyrimidine type DNA intrastrand cross-links: a theoretical verification. Physical Chemistry Chemical Physics 19:42, pages 28907-28916.
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Marc M. Greenberg. 2016. 119 202 .
David M. Close, William H. Nelson & William A. Bernhard. (2013) DNA Damage by the Direct Effect of Ionizing Radiation: Products Produced by Two Sequential One-Electron Oxidations. The Journal of Physical Chemistry A 117:47, pages 12608-12615.
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Anita R. Peoples, Jane Lee, Michael Weinfeld, Jamie R. Milligan & William A. Bernhard. (2012) Yields of damage to C4′ deoxyribose and to pyrimidines in pUC18 by the direct effect of ionizing radiation. Nucleic Acids Research 40:13, pages 6060-6069.
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Julian Garrec, Chandan Patel, Ursula Rothlisberger & Elise Dumont. (2012) Insights into Intrastrand Cross-Link Lesions of DNA from QM/MM Molecular Dynamics Simulations. Journal of the American Chemical Society 134:4, pages 2111-2119.
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Kiran K. K. Sharma, Steven G. Swarts & William A. Bernhard. (2011) Mechanisms of Direct Radiation Damage to DNA: The Effect of Base Sequence on Base End Products. The Journal of Physical Chemistry B 115:16, pages 4843-4855.
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Ilya A. Shkrob, Timothy M. Marin, Amitava Adhikary & Michael D. Sevilla. (2011) Photooxidation of Nucleic Acids on Metal Oxides: Physicochemical and Astrobiological Perspectives. The Journal of Physical Chemistry C 115:8, pages 3393-3403.
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Conor Crean, Nicholas E. Geacintov & Vladimir Shafirovich. (2009) Methylation of 2′-Deoxyguanosine by a Free Radical Mechanism. The Journal of Physical Chemistry B 113:38, pages 12773-12781.
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Justyna Staluszka, Malgorzata Steblecka, Ewa Szajdzinska-Pietek, Ingrid Kohl, Christoph G. Salzmann, Andreas Hallbrucker & Erwin Mayer. (2008) Radicals Produced by γ-Irradiation of Hyperquenched Glassy Water Containing 2′-Deoxyguanosine-5′-monophosphate. The Journal of Physical Chemistry A 112:37, pages 8678-8685.
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William A. Bernhard, Shubhadeep Purkayastha & Jamie R. Milligan. (2007) Which DNA Damage is Likely to Be Relevant in Hormetic Responses?. Dose-Response 6:2, pages dose-response.0.
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Clemens von Sonntag. 2006. Free-Radical-Induced DNA Damage and Its Repair. Free-Radical-Induced DNA Damage and Its Repair 211 334 .
Luis E. Ramírez-Arizmendi, Jenny L. Heidbrink, Leonard P. Guler & Hilkka I. Kenttämaa. (2003) Reactivity of Substituted Charged Phenyl Radicals toward Components of Nucleic Acids. Journal of the American Chemical Society 125:8, pages 2272-2281.
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Philippe Lahorte & Wim Mondelaers. 2000. Physics and Chemistry Basis of Biotechnology. Physics and Chemistry Basis of Biotechnology 277 303 .
Aaron S. Anderson, Jae-Taeg Hwang & Marc M. Greenberg. (2000) Independent Generation and Reactivity of 2‘-Deoxy-5-methyleneuridin-5-yl, a Significant Reactive Intermediate Produced from Thymidine as a Result of Oxidative Stress. The Journal of Organic Chemistry 65:15, pages 4648-4654.
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Pierre-Cyrille Dugal, Hassan Abdoul-Carime & Léon Sanche. (2000) Mechanisms for Low-Energy (0.5−30 eV) Electron-Induced Pyrimidine Ring Fragmentation within Thymine- and Halogen-Substituted Single Strands of DNA. The Journal of Physical Chemistry B 104:23, pages 5610-5617.
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Franck Jolibois, André Grand, Jean Cadet, Carlo Adamo & Vincenzo Barone. (1999) Towards an effective computational tool for the study of radiation-induced lesions of DNA bases. Chemical Physics Letters 301:3-4, pages 255-262.
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Anny-Odile Colson & Michael D. Sevilla. 1999. Computational Molecular Biology. Computational Molecular Biology 245 277 .

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