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Molecular Membrane Biology Volume 23, 2006 - Issue 6
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Original

Molecular dynamics simulations of a bacterial autotransporter: NalP from Neisseria meningitidis

Syma Khalid Department of Biochemistry, University of Oxford, Oxford, UK
&
Mark S. P. Sansom Department of Biochemistry, University of Oxford, Oxford, UKCorrespondence[email protected]
Pages 499-508 | Received 14 Mar 2006, Published online: 09 Jul 2009

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Virginie Roussel-Jazédé, Patrick Van Gelder, Robert Sijbrandi, Lucy Rutten, Ben R. Otto, Joen Luirink, Piet Gros, Jan Tommassen & Peter Van Ulsen. (2011) Channel properties of the translocator domain of the autotransporter Hbp of Escherichia coli . Molecular Membrane Biology 28:3, pages 158-170.
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Emmanuelle Dé, Nathalie Saint, Karine Glinel, Albano C. Meli, Daniel Lévy & Françoise Jacob-Dubuisson. (2008) Influence of the passenger domain of a model autotransporter on the properties of its translocator domain. Molecular Membrane Biology 25:3, pages 192-202.
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Articles from other publishers (31)

Matthew Thomas Doyle & Harris David Bernstein. (2021) BamA forms a translocation channel for polypeptide export across the bacterial outer membrane. Molecular Cell 81:9, pages 2000-2012.e3.
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Andreas R. Kiessling, Anchal Malik & Adrian Goldman. (2019) Recent advances in the understanding of trimeric autotransporter adhesins. Medical Microbiology and Immunology 209:3, pages 233-242.
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Harris D. Bernstein. 2019. Protein Secretion in Bacteria. Protein Secretion in Bacteria 307 318 .
Harris D. Bernstein. (2019) Type V Secretion in Gram-Negative Bacteria. EcoSal Plus 8:2.
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Amin Reza Zolghadr & Maryam Heydari Dokoohaki. (2017) How Does the P7C3-Series of Neuroprotective Small Molecules Prevent Membrane Disruption?. Journal of Chemical Information and Modeling 57:8, pages 2009-2019.
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Hermann AM Mucke. (2016) Patent highlights June–July 2016. Pharmaceutical Patent Analyst 5:6, pages 377-383.
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Harris D. Bernstein. (2015) Looks can be deceiving: recent insights into the mechanism of protein secretion by the autotransporter pathway. Molecular Microbiology 97:2, pages 205-215.
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Peter van Ulsen, Sadeeq ur Rahman, Wouter S.P. Jong, Maria H. Daleke-Schermerhorn & Joen Luirink. (2014) Type V secretion: From biogenesis to biotechnology. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1843:8, pages 1592-1611.
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Jens Dreyer, Paul Strodel, Emiliano Ippoliti, Justin Finnerty, Bob Eisenberg & Paolo Carloni. (2013) Ion Permeation in the NanC Porin from Escherichia coli: Free Energy Calculations along Pathways Identified by Coarse-Grain Simulations. The Journal of Physical Chemistry B 117:43, pages 13534-13542.
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Olga Pavlova, Janine H. Peterson, Raffaele Ieva & Harris D. Bernstein. (2013) Mechanistic link between β barrel assembly and the initiation of autotransporter secretion. Proceedings of the National Academy of Sciences 110:10.
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Daniel A. Holdbrook, Thomas J. Piggot, Mark S.P. Sansom & Syma Khalid. (2013) Stability and membrane interactions of an autotransport protein: MD simulations of the Hia translocator domain in a complex membrane environment. Biochimica et Biophysica Acta (BBA) - Biomembranes 1828:2, pages 715-723.
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Thomas J. Piggot, Daniel A. Holdbrook & Syma Khalid. (2013) Conformational dynamics and membrane interactions of the E. coli outer membrane protein FecA: A molecular dynamics simulation study. Biochimica et Biophysica Acta (BBA) - Biomembranes 1828:2, pages 284-293.
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Jack C. Leo, Iwan Grin & Dirk Linke. (2012) Type V secretion: mechanism(s) of autotransport through the bacterial outer membrane. Philosophical Transactions of the Royal Society B: Biological Sciences 367:1592, pages 1088-1101.
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Denisse L. Leyton, Amanda E. Rossiter & Ian R. Henderson. (2012) From self sufficiency to dependence: mechanisms and factors important for autotransporter biogenesis. Nature Reviews Microbiology 10:3, pages 213-225.
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Travis J. Barnard, James Gumbart, Janine H. Peterson, Nicholas Noinaj, Nicole C. Easley, Nathalie Dautin, Adam J. Kuszak, Emad Tajkhorshid, Harris D. Bernstein & Susan K. Buchanan. (2012) Molecular Basis for the Activation of a Catalytic Asparagine Residue in a Self-Cleaving Bacterial Autotransporter. Journal of Molecular Biology 415:1, pages 128-142.
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Thomas J. Piggot, Daniel A. Holdbrook & Syma Khalid. (2011) Electroporation of the E. coli and S. Aureus Membranes: Molecular Dynamics Simulations of Complex Bacterial Membranes. The Journal of Physical Chemistry B 115:45, pages 13381-13388.
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Ángel Piñeiro, Peter J. Bond & Syma Khalid. (2011) Exploring the conformational dynamics and membrane interactions of PorB from C. glutamicum: A multi-scale molecular dynamics simulation study. Biochimica et Biophysica Acta (BBA) - Biomembranes 1808:6, pages 1746-1752.
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Peter van Ulsen. 2011. Bacterial Adhesion. Bacterial Adhesion 125 142 .
S. Vohra, B. A. Hall, D. A. Holdbrook, S. Khalid & P. C. Biggin. (2010) Bookshelf: a simple curation system for the storage of biomolecular simulation data. Database 2010:0, pages baq033-baq033.
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Nami Tajima, Fumihiro Kawai, Sam-Yong Park & Jeremy R.H. Tame. (2010) A Novel Intein-Like Autoproteolytic Mechanism in Autotransporter Proteins. Journal of Molecular Biology 402:4, pages 645-656.
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Pu Tian & Harris D. Bernstein. (2010) Molecular Basis for the Structural Stability of an Enclosed β-Barrel Loop. Journal of Molecular Biology 402:2, pages 475-489.
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Syma Khalid & Marc Baaden. 2010. Molecular Simulations and Biomembranes. Molecular Simulations and Biomembranes 225 247 .
Harris D. Bernstein. (2010) Type V Secretion: the Autotransporter and Two-Partner Secretion Pathways. EcoSal Plus 4:1.
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Raffaele Ieva & Harris D. Bernstein. (2009) Interaction of an autotransporter passenger domain with BamA during its translocation across the bacterial outer membrane. Proceedings of the National Academy of Sciences 106:45, pages 19120-19125.
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Justin A. Lemkul & David R. Bevan. (2009) Perturbation of membranes by the amyloid β-peptide - a molecular dynamics study. FEBS Journal 276:11, pages 3060-3075.
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Min Chen, Syma Khalid, Mark S. P. Sansom & Hagan Bayley. (2008) Outer membrane protein G: Engineering a quiet pore for biosensing. Proceedings of the National Academy of Sciences 105:17, pages 6272-6277.
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Raffaele Ieva, Kristen M. Skillman & Harris D. Bernstein. (2007) Incorporation of a polypeptide segment into the β-domain pore during the assembly of a bacterial autotransporter. Molecular Microbiology 67:1, pages 188-201.
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Timothy Carpenter, Syma Khalid & Mark S.P. Sansom. (2007) A multidomain outer membrane protein from Pasteurella multocida: Modelling and simulation studies of PmOmpA. Biochimica et Biophysica Acta (BBA) - Biomembranes 1768:11, pages 2831-2840.
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Syma Khalid, John Holyoake & Mark S. P. Sansom. 2007. Biophysical Analysis of Membrane Proteins. Biophysical Analysis of Membrane Proteins 159 185 .
Nathalie DautinHarris D. Bernstein. (2007) Protein Secretion in Gram-Negative Bacteria via the Autotransporter Pathway. Annual Review of Microbiology 61:1, pages 89-112.
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Harris D. Bernstein. (2007) Are bacterial ‘autotransporters’ really transporters?. Trends in Microbiology 15:10, pages 441-447.
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