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Review Article

The multi-omics promise in context: from sequence to microbial isolate

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Pages 212-229 | Received 20 Jan 2017, Accepted 16 May 2017, Published online: 31 May 2017

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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
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Crossref
William H. Lewis, Guillaume Tahon, Patricia Geesink, Diana Z. Sousa & Thijs J. G. Ettema. (2020) Innovations to culturing the uncultured microbial majority. Nature Reviews Microbiology 19:4, pages 225-240.
Crossref
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Crossref
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Adam Pyzik, Karol Ciuchcinski, Mikolaj Dziurzynski & Lukasz Dziewit. (2021) The Bad and the Good—Microorganisms in Cultural Heritage Environments—An Update on Biodeterioration and Biotreatment Approaches. Materials 14:1, pages 177.
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Vanessa N. Kavamura, Rodrigo Mendes, Adnane Bargaz & Tim H. Mauchline. (2021) Defining the wheat microbiome: Towards microbiome-facilitated crop production. Computational and Structural Biotechnology Journal 19, pages 1200-1213.
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Mohammed Jamaloddin, A. Maliha, C. G. Gokulan, Namami Gaur & Hitendra Kumar Patel. 2021. Omics Technologies for Sustainable Agriculture and Global Food Security Volume 1. Omics Technologies for Sustainable Agriculture and Global Food Security Volume 1 241 279 .
Marcos Pileggi, Sônia A.V. Pileggi & Michael J. Sadowsky. (2020) Herbicide bioremediation: from strains to bacterial communities. Heliyon 6:12, pages e05767.
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Maria Tartaglia, Felipe Bastida, Rosaria Sciarrillo & Carmine Guarino. (2020) Soil Metaproteomics for the Study of the Relationships Between Microorganisms and Plants: A Review of Extraction Protocols and Ecological Insights. International Journal of Molecular Sciences 21:22, pages 8455.
Crossref
M Marvasi. (2020) Integrative Applications of Microbial Biotechnology to Cultural Heritages Conservation and Promotion. IOP Conference Series: Materials Science and Engineering 949:1, pages 012095.
Crossref
Patrick Lohmann, Simon Benk, Gerd Gleixner, Karin Potthast, Beate Michalzik, Nico Jehmlich & Martin von Bergen. (2020) Seasonal Patterns of Dominant Microbes Involved in Central Nutrient Cycles in the Subsurface. Microorganisms 8:11, pages 1694.
Crossref
Hema Chandran, Mukesh Meena & Kanika Sharma. (2020) Microbial Biodiversity and Bioremediation Assessment Through Omics Approaches. Frontiers in Environmental Chemistry 1.
Crossref
Will A. Overholt, Martin Hölzer, Patricia Geesink, Celia Diezel, Manja Marz & Kirsten Küsel. (2020) Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome‐assembled genomes from a complex aquifer system. Environmental Microbiology 22:9, pages 4000-4013.
Crossref
Thea Van Rossum, Pamela Ferretti, Oleksandr M. Maistrenko & Peer Bork. (2020) Diversity within species: interpreting strains in microbiomes. Nature Reviews Microbiology 18:9, pages 491-506.
Crossref
Susanne Theuerl, Johanna Klang, Benedikt Hülsemann, Torsten Mächtig & Julia Hassa. (2020) Microbiome Diversity and Community-Level Change Points within Manure-Based Small Biogas Plants. Microorganisms 8:8, pages 1169.
Crossref
Lasse Nyholm, Adam Koziol, Sofia Marcos, Amanda Bolt Botnen, Ostaizka Aizpurua, Shyam Gopalakrishnan, Morten T. Limborg, M.Thomas P. Gilbert & Antton Alberdi. (2020) Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research. iScience 23:8, pages 101414.
Crossref
Massimiliano Marvasi, Giorgio Mastromei & Brunella Perito. (2020) Bacterial Calcium Carbonate Mineralization in situ Strategies for Conservation of Stone Artworks: From Cell Components to Microbial Community. Frontiers in Microbiology 11.
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Crossref
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Crossref
D.E. LaRowe, S. Arndt, J.A. Bradley, E.R. Estes, A. Hoarfrost, S.Q. Lang, K.G. Lloyd, N. Mahmoudi, W.D. Orsi, S.R. Shah Walter, A.D. Steen & R. Zhao. (2020) The fate of organic carbon in marine sediments - New insights from recent data and analysis. Earth-Science Reviews 204, pages 103146.
Crossref
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Crossref
Ulla Hynönen, Erwin G. Zoetendal, Anna-Maija K. Virtala, Sudarshan Shetty, Shah Hasan, Miia Jakava-Viljanen, Willem M. de Vos & Airi Palva. (2020) Molecular ecology of the yet uncultured bacterial Ct85-cluster in the mammalian gut. Anaerobe 62, pages 102104.
Crossref
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Johanna Gutleben, Catarina Loureiro, Laura Adriana Ramírez Romero, Sudarshan Shetty, René H. Wijffels, Hauke Smidt & Detmer Sipkema. (2020) Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients. Frontiers in Microbiology 11.
Crossref
Mohamed S. Sarhan, Elhussein F. Mourad, Rahma A. Nemr, Mohamed R. Abdelfadeel, Hassan-Sibroe A. Daanaa, Hanan H. Youssef, Hanan A. Goda, Mervat A. Hamza, Mohamed Fayez, Bettina Eichler-Löbermann, Silke Ruppel & Nabil A. Hegazi. (2019) An inoculum-dependent culturing strategy (IDC) for the cultivation of environmental microbiomes and the isolation of novel endophytic Actinobacteria. The Journal of Antibiotics 73:1, pages 66-71.
Crossref
P.T. Pratheesh, Sunaina Lal, Rando Tuvikene, Sivakumar Manickam & Surya Sudheer. 2020. New and Future Developments in Microbial Biotechnology and Bioengineering. New and Future Developments in Microbial Biotechnology and Bioengineering 17 28 .
Devendra Singh, Neelam Geat, Motilal Mehriya, Mahendra Vikram Singh Rajawat, Radha Prasanna, Ashutosh Kumar, Geeta Kumari & Manindra Nath Jha. 2020. Waste to Energy: Prospects and Applications. Waste to Energy: Prospects and Applications 235 260 .
Cyriac Abby Philips, Philip Augustine, Praveen Kumar Yerol, Ganesh Narayan Ramesh, Rizwan Ahamed, Sasidharan Rajesh, Tom George & Sandeep Kumbar. (2019) Modulating the Intestinal Microbiota: Therapeutic Opportunities in Liver Disease. Journal of Clinical and Translational Hepatology X:X, pages 1-13.
Crossref
Joanne Chee-Sanford, David Tian & Robert Sanford. (2019) Consumption of N2O and other N-cycle intermediates by Gemmatimonas aurantiaca strain T-27. Microbiology 165:12, pages 1345-1354.
Crossref
P. Becker, M. Bosschaerts, P. Chaerle, H.-M. Daniel, A. Hellemans, A. Olbrechts, L. Rigouts, A. Wilmotte & M. Hendrickx. (2019) Public Microbial Resource Centers: Key Hubs for Findable, Accessible, Interoperable, and Reusable (FAIR) Microorganisms and Genetic Materials. Applied and Environmental Microbiology 85:21.
Crossref
Karissa L. Cross, James H. Campbell, Manasi Balachandran, Alisha G. Campbell, Connor J. Cooper, Ann Griffen, Matthew Heaton, Snehal Joshi, Dawn Klingeman, Eugene Leys, Zamin Yang, Jerry M. Parks & Mircea Podar. (2019) Targeted isolation and cultivation of uncultivated bacteria by reverse genomics. Nature Biotechnology 37:11, pages 1314-1321.
Crossref
Carolina Rubiano-Labrador, Carolina Díaz-Cárdenas, Gina López, Javier Gómez & Sandra Baena. (2019) Colombian Andean thermal springs: reservoir of thermophilic anaerobic bacteria producing hydrolytic enzymes. Extremophiles 23:6, pages 793-808.
Crossref
Anak Indraningrat, Sebastian Micheller, Mandy Runderkamp, Ina Sauerland, Leontine Becking, Hauke Smidt & Detmer Sipkema. (2019) Cultivation of Sponge-Associated Bacteria from Agelas sventres and Xestospongia muta Collected from Different Depths. Marine Drugs 17:10, pages 578.
Crossref
Massimiliano Marvasi, Duccio Cavalieri, Giorgio Mastromei, Antonella Casaccia & Brunella Perito. (2019) Omics technologies for an in-depth investigation of biodeterioration of cultural heritage. International Biodeterioration & Biodegradation 144, pages 104736.
Crossref
Nidia Maldonado-Carmona, Melissa Vázquez-Hernández, Osiris Jair Patiño Chávez, Stefany Daniela Rodríguez-Luna, Omar Jiménez Rodríguez, Sergio Sanchez & Corina Diana Ceapă. (2019) Impact of ∼omics in the detection and validation of potential anti-infective drugs. Current Opinion in Pharmacology 48, pages 1-7.
Crossref
Sam Lambrechts, Anne Willems & Guillaume Tahon. (2019) Uncovering the Uncultivated Majority in Antarctic Soils: Toward a Synergistic Approach. Frontiers in Microbiology 10.
Crossref
Jean-Étienne R.L. Morlighem & Gandhi Radis-Baptista. (2019) The Place for Enzymes and Biologically Active Peptides from Marine Organisms for Application in Industrial and Pharmaceutical Biotechnology. Current Protein & Peptide Science 20:4, pages 334-355.
Crossref
Dennis Versluis, Teresita de J. Bello González, Erwin G. Zoetendal, Mark W. J. van Passel & Hauke Smidt. (2019) High throughput cultivation-based screening on porous aluminum oxide chips allows targeted isolation of antibiotic resistant human gut bacteria. PLOS ONE 14:1, pages e0210970.
Crossref
Annie G. West, David W. Waite, Peter Deines, David G. Bourne, Andrew Digby, Valerie J. McKenzie & Michael W. Taylor. (2019) The microbiome in threatened species conservation. Biological Conservation 229, pages 85-98.
Crossref
Tahmish Fatima & Naveen Kumar Arora. 2019. Phyto and Rhizo Remediation. Phyto and Rhizo Remediation 121 146 .
Sarah R. CarterChristopher M. Warner. (2018) Trends in Synthetic Biology Applications, Tools, Industry, and Oversight and Their Security Implications. Health Security 16:5, pages 320-333.
Crossref
Hayedeh Behzad, Katsuhiko Mineta & Takashi Gojobori. (2018) Global Ramifications of Dust and Sandstorm Microbiota. Genome Biology and Evolution 10:8, pages 1970-1987.
Crossref
Michael Goodfellow, Imen Nouioui, Roy Sanderson, Feiyang Xie & Alan T. Bull. (2018) Rare taxa and dark microbial matter: novel bioactive actinobacteria abound in Atacama Desert soils. Antonie van Leeuwenhoek 111:8, pages 1315-1332.
Crossref
Alexander Umanets, Iris de Winter, Freek IJdema, Javier Ramiro-Garcia, Pim van Hooft, Ignas M A Heitkönig, Herbert H T Prins & Hauke Smidt. (2018) Occupancy strongly influences faecal microbial composition of wild lemurs. FEMS Microbiology Ecology 94:3.
Crossref
Nasib Singh, Joginder Singh & Karan Singh. 2018. Microbial Bioprospecting for Sustainable Development. Microbial Bioprospecting for Sustainable Development 3 28 .
Amélia Camarinha-Silva & W. Florian Fricke. 2018. The Gut Microbiome in Health and Disease. The Gut Microbiome in Health and Disease 49 65 .