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SAR and QSAR in Environmental Research Volume 21, 2010 - Issue 1-2
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Original Articles

Cellular automata modelling of biomolecular networks dynamics

D. Bonchev Center for the Study of Biological Complexity and Department of Mathematics and Applied Mathematics, Virginia Commonwealth University, P.O. Box 842030, Richmond, Virginia, USACorrespondence[email protected]
,
S. Thomas Center for the Study of Biological Complexity and Department of Mathematics and Applied Mathematics, Virginia Commonwealth University, P.O. Box 842030, Richmond, Virginia, USA
,
A. Apte Department of Chemical and Life Science Engineering, School of Engineering, West Wing, Virginia Commonwealth University, Richmond, Virginia, USA
&
L.B. Kier Center for the Study of Biological Complexity and Department of Mathematics and Applied Mathematics, Virginia Commonwealth University, P.O. Box 842030, Richmond, Virginia, USA
Pages 77-102 | Received 06 Jul 2009, Accepted 03 Nov 2009, Published online: 06 Apr 2010

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J. Devillers, H. Devillers, A. Decourtye & P. Aupinel. (2010) Internet resources for agent-based modelling. SAR and QSAR in Environmental Research 21:3-4, pages 337-350.
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Articles from other publishers (21)

I. V. Lebedev, S. I. Ivanov, R. R. Safarov & N. V. Men’shutina. (2023) Digital Twins for the Porous Structures of Aerogels with the Use of the Cellular Automation Approach and Bezier Curves. Theoretical Foundations of Chemical Engineering 57:4, pages 482-488.
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Natalia Menshutina, Igor Lebedev, Evgeniy Lebedev, Andrey Kolnoochenko, Alexander Troyankin, Ratmir Dashkin, Michael Shishanov, Pavel Flegontov & Maxim Burdeyniy. (2020) Complex Modelling and Design of Catalytic Reactors Using Multiscale Approach—Part 2: Catalytic Reactions Modelling with Cellular Automata Approach. Computation 8:4, pages 87.
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Sayantan Mondal, Saumyak Mukherjee & Biman Bagchi. (2020) Mathematical modeling and cellular automata simulation of infectious disease dynamics: Applications to the understanding of herd immunity. The Journal of Chemical Physics 153:11.
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Natalia V. MenshutinaAndrey V. KolnoochenkoEvgeniy A. Lebedev. (2020) Cellular Automata in Chemistry and Chemical Engineering. Annual Review of Chemical and Biomolecular Engineering 11:1, pages 87-108.
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Jan Ewald, Patricia Sieber, Ravindra Garde, Stefan N. Lang, Stefan Schuster & Bashar Ibrahim. (2019) Trends in mathematical modeling of host–pathogen interactions. Cellular and Molecular Life Sciences 77:3, pages 467-480.
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Hengameh Shams, Mohammad Soheilypour, Mohaddeseh Peyro, Ruhollah Moussavi-Baygi & Mohammad R. K. Mofrad. (2017) Looking “Under the Hood” of Cellular Mechanotransduction with Computational Tools: A Systems Biomechanics Approach across Multiple Scales. ACS Biomaterials Science & Engineering 3:11, pages 2712-2726.
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M. Soheilypour & M. R. K. Mofrad. (2016) Regulation of RNA-binding proteins affinity to export receptors enables the nuclear basket proteins to distinguish and retain aberrant mRNAs. Scientific Reports 6:1.
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Mohammad Azimi, Evgeny Bulat, Karsten Weis & Mohammad R. K. Mofrad. (2014) An agent-based model for mRNA export through the nuclear pore complex. Molecular Biology of the Cell 25:22, pages 3643-3653.
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Jianbo Tong, Li Zhong, Xiang Zhao, Shuling Liu & Ping Wang. (2013) Quantitative structure–activity relationship studies of diarylpyrimidine derivatives as anti-HIV drugs using new three-dimensional structure descriptors. Medicinal Chemistry Research 23:4, pages 1634-1642.
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Mohammad Azimi & Mohammad R. K. Mofrad. (2013) Higher Nucleoporin-Importin? Affinity at the Nuclear Basket Increases Nucleocytoplasmic Import. PLoS ONE 8:11, pages e81741.
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Jianbo Tong, Yang Chen, Shuling Liu & Xiameng Xu. (2013) QSAR studies of antituberculosis drug using three-dimensional structure descriptors. Medicinal Chemistry Research 22:10, pages 4946-4952.
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Gary L. Mullen & Daniel Panario. 2013. Handbook of Finite Fields. Handbook of Finite Fields 777 860 .
Vlado Dančík, Amrita Basu & Paul Clemons. 2013. Systems Biology. Systems Biology 129 178 .
Humberto González-Díaz & Pablo Riera-Fernández. (2012) New Markov-Autocorrelation Indices for Re-evaluation of Links in Chemical and Biological Complex Networks used in Metabolomics, Parasitology, Neurosciences, and Epidemiology. Journal of Chemical Information and Modeling 52:12, pages 3331-3340.
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Michael Levin. (2012) Molecular bioelectricity in developmental biology: New tools and recent discoveries. BioEssays 34:3, pages 205-217.
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Humberto Gonz?lez-D?az, Cristian R. Munteanu, Lucian Postelnicu, Francisco Prado-Prado, Marcos Gestal & Alejandro Pazos. (2012) LIBP-Pred: web server for lipid binding proteins using structural network parameters; PDB mining of human cancer biomarkers and drug targets in parasites and bacteria. Molecular BioSystems 8:3, pages 851.
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Jochen H. M. Prehn, Heinrich J. Huber & Carla O’Connor. 2013. Systems Biology of Apoptosis. Systems Biology of Apoptosis 85 99 .
Franziska Hinkelmann, Madison Brandon, Bonny Guang, Rustin McNeill, Grigoriy Blekherman, Alan Veliz-Cuba & Reinhard Laubenbacher. (2011) ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra. BMC Bioinformatics 12:1.
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Mohammad Azimi, Yousef Jamali & Mohammad R. K. Mofrad. (2011) Accounting for Diffusion in Agent Based Models of Reaction-Diffusion Systems with Application to Cytoskeletal Diffusion. PLoS ONE 6:9, pages e25306.
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Heinrich J. Huber, Heiko Duessmann, Jakub Wenus, Se?n M. Kilbride & Jochen H.M. Prehn. (2011) Mathematical modelling of the mitochondrial apoptosis pathway. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1813:4, pages 608-615.
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Advait Apte, Danail Bonchev & Stephen Fong. (2010) Cellular Automata Modeling of FASL‐Initiated Apoptosis. Chemistry & Biodiversity 7:5, pages 1163-1172.
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