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Expert Review of Molecular Diagnostics Volume 16, 2016 - Issue 8
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Review

Transcriptomics, proteomics and metabolomics driven biomarker discovery in COPD: an update

Nilanjana GhoshSchool of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur, India
,
Mainak DuttaSchool of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur, India
,
Brajesh SinghSchool of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur, India
,
Rintu BanerjeeDepartment of Agricultural & Food Engineering, Indian Institute of Technology Kharagpur, Kharagpur, India
,
Parthasarathi BhattacharyyaDepartment of Pulmonary medicine, Institute of Pulmocare and Research, Kolkata, India
&
Koel ChaudhurySchool of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur, IndiaCorrespondence[email protected]
Pages 897-913 | Received 06 Feb 2016, Accepted 02 Jun 2016, Published online: 20 Jun 2016

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Ling Peng, Hong You, Mei-yu Xu, Zhou-yu Dong, Min Liu, Wen-jing Jin & Chao Zhou. (2023) A Novel Metabolic Score for Predicting the Acute Exacerbation in Patients with Chronic Obstructive Pulmonary Disease. International Journal of Chronic Obstructive Pulmonary Disease 18, pages 785-795.
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Eda Celikbas, Deborah Penque & Jerome Zoidakis. (2019) Systematic review on recent potential biomarkers of chronic obstructive pulmonary disease. Expert Review of Molecular Diagnostics 19:1, pages 37-45.
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Job J. M. H. van Bragt, Susanne J. H. Vijverberg, Els J. M. Weersink, Levi B. Richards, Anne H. Neerincx, Peter J. Sterk, Elisabeth H. D. Bel & Anke H. Maitland-van der Zee. (2018) Blood biomarkers in chronic airways diseases and their role in diagnosis and management. Expert Review of Respiratory Medicine 12:5, pages 361-374.
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Chunhua Ma, Kexi Liao, Jing Wang, Tao Li & Liangming Liu. (2023) l-Arginine, as an essential amino acid, is a potential substitute for treating COPD via regulation of ROS/NLRP3/NF-κB signaling pathway. Cell & Bioscience 13:1.
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Alessia Vignoli, Gaia Meoni, Veronica Ghini, Francesca Di Cesare, Leonardo Tenori, Claudio Luchinat & Paola Turano. 2023. Metabolomics and Its Impact on Health and Diseases. Metabolomics and Its Impact on Health and Diseases 209 245 .
Joann Diray-Arce, Maria Giulia Conti, Boryana Petrova, Naama Kanarek, Asimenia Angelidou & Ofer Levy. (2020) Integrative Metabolomics to Identify Molecular Signatures of Responses to Vaccines and Infections. Metabolites 10:12, pages 492.
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Debra Lynch Kelly, Nosha Farhadfar, Angela Starkweather, Timothy J Garrett, Yingwei Yao, John R. Wingard, Iqbal Mahmud, Victoria Menzies, Param Patel, Karima M. Alabasi & Debra Lyon. (2020) Global Metabolomics in Allogeneic Hematopoietic Cell Transplantation Recipients Discordant for Chronic Graft-versus-Host Disease. Biology of Blood and Marrow Transplantation 26:10, pages 1803-1810.
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Jung Dae Lee, Hyang Yeon Kim, Keunsoo Kang, Hye Gwang Jeong, Mi-Kyung Song, In Hwan Tae, Su Hyun Lee, Hae Ri Kim, Kyuhong Lee, Sehyun Chae, Daehee Hwang, Suhkmann Kim, Hyung Sik Kim, Kyu-Bong Kim & Byung-Mu Lee. (2020) Integration of transcriptomics, proteomics and metabolomics identifies biomarkers for pulmonary injury by polyhexamethylene guanidine phosphate (PHMG-p), a humidifier disinfectant, in rats. Archives of Toxicology 94:3, pages 887-909.
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Rui Zhang, Zhenjun Ji, Yangyang Qu, Mingming Yang, Yamin Su, Wenjie Zuo, Qingyou Zhao, Genshan Ma & Yongjun Li. (2020) Clinical value of ARG1 in acute myocardial infarction patients: Bioinformatics-based approach. Biomedicine & Pharmacotherapy 121, pages 109590.
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Nan Ran, Zhiqiang Pang, Yinuo Gu, He Pan, Xu Zuo, Xuewa Guan, Yuze Yuan, Ziyan Wang, Yingqiao Guo, Zixu Cui & Fang Wang. (2019) An Updated Overview of Metabolomic Profile Changes in Chronic Obstructive Pulmonary Disease. Metabolites 9:6, pages 111.
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Bing Yu, Claudia Flexeder, Robert McGarrahIIIIII, Annah Wyss, Alanna Morrison, Kari North, Eric Boerwinkle, Gabi Kastenmüller, Christian Gieger, Karsten Suhre, Stefan Karrasch, Annette Peters, Gregory Wagner, Gregory Michelotti, Robert Mohney, Holger Schulz & Stephanie London. (2019) Metabolomics Identifies Novel Blood Biomarkers of Pulmonary Function and COPD in the General Population. Metabolites 9:4, pages 61.
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Maddalena Cagnone, Roberta Salvini, Anna Bardoni, Marco Fumagalli, Paolo Iadarola & Simona Viglio. (2019) Searching for biomarkers of chronic obstructive pulmonary disease using proteomics: The current state. ELECTROPHORESIS 40:1, pages 151-164.
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Qingyu Huang, Dayu Hu, Xiaofei Wang, Yahong Chen, Yan Wu, Lu Pan, Hongyu Li, Jie Zhang, Furong Deng, Xinbiao Guo & Heqing Shen. (2018) The modification of indoor PM2.5 exposure to chronic obstructive pulmonary disease in Chinese elderly people: A meet-in-metabolite analysis. Environment International 121, pages 1243-1252.
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Chuan-Xing Li, Craig E. Wheelock, C. Magnus Sköld & Åsa M. Wheelock. (2018) Integration of multi-omics datasets enables molecular classification of COPD. European Respiratory Journal 51:5, pages 1701930.
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Levi B. Richards, Anne H. Neerincx, Job J.M.H. van Bragt, Peter J. Sterk, Elisabeth H.D. Bel & Anke H. Maitland-van der Zee. (2018) Biomarkers and asthma management: analysis and potential applications. Current Opinion in Allergy & Clinical Immunology 18:2, pages 96-108.
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Kalle Kilk, Argo Aug, Aigar Ottas, Ursel Soomets, Siiri Altraja & Alan Altraja. (2018) Phenotyping of Chronic Obstructive Pulmonary Disease Based on the Integration of Metabolomes and Clinical Characteristics. International Journal of Molecular Sciences 19:3, pages 666.
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Mengyuan Kan, Maya Shumyatcher & Blanca E. Himes. (2017) Using omics approaches to understand pulmonary diseases. Respiratory Research 18:1.
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Tse Joyce KY. (2017) Nitrogen Oxides Induced Neurodegeneration as Examined by Nuclear Magnetic Resonance. Journal of Neurology & Stroke 7:5.
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Alvar Agustí, Mona Bafadhel, Richard Beasley, Elisabeth H. Bel, Rosa Faner, Peter G. Gibson, Renaud Louis, Vanessa M. McDonald, Peter J. Sterk, Mike Thomas, Claus Vogelmeier & Ian D. Pavord. (2017) Precision medicine in airway diseases: moving to clinical practice. European Respiratory Journal 50:4, pages 1701655.
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Peter G. Shields, Micah Berman, Theodore M. Brasky, Jo L. Freudenheim, Ewy Mathe, Joseph P. McElroy, Min-Ae Song & Mark D. Wewers. (2017) A Review of Pulmonary Toxicity of Electronic Cigarettes in the Context of Smoking: A Focus on Inflammation. Cancer Epidemiology, Biomarkers & Prevention 26:8, pages 1175-1191.
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Huanhuan Lv, Feng Jiang, Daogang Guan, Cheng Lu, Baosheng Guo, Chileung Chan, Songlin Peng, Baoqin Liu, Wenwei Guo, Hailong Zhu, Xuegong Xu, Aiping Lu & Ge Zhang. (2016) Metabolomics and Its Application in the Development of Discovering Biomarkers for Osteoporosis Research. International Journal of Molecular Sciences 17:12, pages 2018.
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