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RNA Biology Volume 12, 2015 - Issue 1
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Research Paper

The role of short RNA loops in recognition of a single-hairpin exon derived from a mammalian-wide interspersed repeat

Jana KralovicovaUniversity of Southampton; Faculty of Medicine; Southampton, UK;Institute of Neuroimmunology; Slovak Academy of Sciences; Bratislava, Slovak Republic
,
Alpa PatelInstitute of Neuroimmunology; Slovak Academy of Sciences; Bratislava, Slovak Republic
,
Mark SearleUniversity of Nottingham; Centre for Biomolecular Sciences; School of Chemistry; Nottingham, UK
&
Igor VorechovskyUniversity of Southampton; Faculty of Medicine; Southampton, UKCorrespondence[email protected]
Pages 54-69 | Received 11 Sep 2014, Accepted 20 Nov 2014, Published online: 31 Mar 2015

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Maria Elena Vilar Alvarez, Martin Chivers, Ivana Borovska, Steven Monger, Eleni Giannoulatou, Jana Kralovicova & Igor Vorechovsky. (2021) Transposon clusters as substrates for aberrant splice-site activation. RNA Biology 18:3, pages 354-367.
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Articles from other publishers (18)

Ivana Borovská, Igor Vořechovský & Jana Královičová. (2023) Alu RNA fold links splicing with signal recognition particle proteins . Nucleic Acids Research.
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Desmond J. Hamilton, Abigail E. Hein, Deborah S. Wuttke & Robert T. Batey. (2023) The DNA binding high mobility group box protein family functionally binds RNA . WIREs RNA.
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Mauro Grabiele & Patricia Mabel Aguilera. (2022) Au Family Short Retroposons Contribute to Transcriptional and Phenotypic Diversity in Tomato (Solanaceae). Brazilian Archives of Biology and Technology 65.
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Gerald Litwack. 2022. Human Biochemistry. Human Biochemistry 287 356 .
Yongna Yuan, Shaowei Fu, Dongxu Huo, Wei Su, Ruisheng Zhang & Jiaxuan Wei. (2021) Multipolar electrostatics for hairpin and pseudoknots in RNA : Improving the accuracy of force field potential energy function . Journal of Computational Chemistry 42:11, pages 771-786.
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Katarzyna Taylor & Krzysztof Sobczak. (2020) Intrinsic Regulatory Role of RNA Structural Arrangement in Alternative Splicing Control. International Journal of Molecular Sciences 21:14, pages 5161.
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R. N. Mustafin & E. K. Khusnutdinova. (2019) The Role of Reverse Transcriptase in the Origin of Life. Biochemistry (Moscow) 84:8, pages 870-883.
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Jana Královičová, Ivana Ševčíková, Eva Stejskalová, Mina Obuća, Michael Hiller, David Staněk & Igor Vořechovský. (2018) PUF60-activated exons uncover altered 3′ splice-site selection by germline missense mutations in a single RRM. Nucleic Acids Research 46:12, pages 6166-6187.
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Amparo Garcia-Lopez, Francesca Tessaro, Hendrik R. A. Jonker, Anna Wacker, Christian Richter, Arnaud Comte, Nikolaos Berntenis, Roland Schmucki, Klas Hatje, Olivier Petermann, Gianpaolo Chiriano, Remo Perozzo, Daniel Sciarra, Piotr Konieczny, Ignacio Faustino, Guy Fournet, Modesto Orozco, Ruben Artero, Friedrich Metzger, Martin Ebeling, Peter Goekjian, Benoît Joseph, Harald Schwalbe & Leonardo Scapozza. (2018) Targeting RNA structure in SMN2 reverses spinal muscular atrophy molecular phenotypes. Nature Communications 9:1.
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R. N. Mustafin & E. K. Khusnutdinova. (2018) The Role of Transposons in Epigenetic Regulation of Ontogenesis. Russian Journal of Developmental Biology 49:2, pages 61-78.
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R. N. Mustafin & E. K. Khusnutdinova. (2018) The Role of Transposable Elements in Emergence of Metazoa. Biochemistry (Moscow) 83:3, pages 185-199.
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Gerald Litwack. 2018. Human Biochemistry. Human Biochemistry 257 317 .
Marc Shenouda, Ashley B. Zhang, Anna Weichert & Janice Robertson. 2018. RNA Metabolism in Neurodegenerative Diseases. RNA Metabolism in Neurodegenerative Diseases 239 263 .
Tatsiana V. Ramanouskaya & Vasily V. Grinev. (2017) The determinants of alternative RNA splicing in human cells. Molecular Genetics and Genomics 292:6, pages 1175-1195.
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Debasish Mukherjee & Dhananjay Bhattacharyya. (2017) Intrinsic structural variability in GNRA-like tetraloops: insight from molecular dynamics simulation. Journal of Molecular Modeling 23:10.
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Kandai Nozu, Kazumoto Iijima, Toru Igarashi, Shiro Yamada, Jana Kralovicova, Yoshimi Nozu, Tomohiko Yamamura, Shogo Minamikawa, Ichiro Morioka, Takeshi Ninchoji, Hiroshi Kaito, Koichi Nakanishi & Igor Vorechovsky. (2017) A birth of bipartite exon by intragenic deletion. Molecular Genetics & Genomic Medicine 5:3, pages 287-294.
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Jana Kralovicova & Igor Vorechovsky. (2017) Alternative splicing of U2AF1 reveals a shared repression mechanism for duplicated exons . Nucleic Acids Research 45:1, pages 417-434.
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Jana Kralovicova, Marcin Knut, Nicholas C. P. Cross & Igor Vorechovsky. (2016) Exon-centric regulation of ATM expression is population-dependent and amenable to antisense modification by pseudoexon targeting. Scientific Reports 6:1.
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