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RNA Biology Volume 13, 2016 - Issue 2

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The elusive quest for RNA knots

Aaron S. BurtonNASA Johnson Space Center, Houston, TX, 77058USA

Marco Di StefanoSISSA, Via Bonomea 265, I-34014Trieste, Italy

Niles LehmanDepartment of Chemistry, Portland State University, PortlandOR, 97207USA

Henri OrlandInstitut de Physique Théorique, Commissariat à l'énergie atomique CEA, IPhT CNRS, UMR3681, F-91191Gif-sur-YvetteFrance;Beijing Computational Science Research Center, Haidian District Beijing, 100084, China

Cristian MichelettiSISSA, Via Bonomea 265, I-34014Trieste, ItalyCorrespondence[email protected]

Pages 134-139 | Received 02 Nov 2015, Accepted 17 Nov 2015, Published online: 23 Feb 2016

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https://doi.org/10.1080/15476286.2015.1132069
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Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk & Maciej Antczak. (2022) RNAspider: a webserver to analyze entanglements in RNA 3D structures. Nucleic Acids Research 50:W1, pages W663-W669.
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Cristian Micheletti. 2022. Topological Polymer Chemistry. Topological Polymer Chemistry 115 133 .

Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Agnieszka Korpeta, Ryszard W Adamiak, Maciej Antczak & Marta Szachniuk. (2021) Entanglements of structure elements revealed in RNA 3D models. Nucleic Acids Research 49:17, pages 9625-9632.
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Xiaodong Qi, Fei Zhang, Zhaoming Su, Shuoxing Jiang, Dongran Han, Baoquan Ding, Yan Liu, Wah Chiu, Peng Yin & Hao Yan. (2018) Programming molecular topologies from single-stranded nucleic acids. Nature Communications 9:1.
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Pawel Dabrowski-Tumanski & Joanna I. Sulkowska. (2018) The APS-bracket – A topological tool to classify lasso proteins, RNAs and other tadpole-like structures. Reactive and Functional Polymers 132, pages 19-25.
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Salvatore Capozziello & Richard Pincak. (2018) The Chern–Simons current in time series of knots and links in proteins. Annals of Physics 393, pages 413-446.
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Di Liu, Yaming Shao, Gang Chen, Yuk-Ching Tse-Dinh, Joseph A. Piccirilli & Yossi Weizmann. (2017) Synthesizing topological structures containing RNA. Nature Communications 8:1.
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Lei Liu & Changbong Hyeon. (2016) Contact Statistics Highlight Distinct Organizing Principles of Proteins and RNA. Biophysical Journal 110:11, pages 2320-2327.
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