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Review

RNA binding to APOBEC deaminases; Not simply a substrate for C to U editing

Pages 1153-1165 | Received 30 Sep 2016, Accepted 08 Nov 2016, Published online: 18 Dec 2016

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Mark Helm. (2017) Editorial: RNA modifications – what to read first?. RNA Biology 14:9, pages 1087-1088.
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Lucyna Budzko, Karolina Hoffa-Sobiech, Paulina Jackowiak & Marek Figlerowicz. (2023) Engineered deaminases as a key component of DNA and RNA editing tools. Molecular Therapy - Nucleic Acids 34, pages 102062.
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Wesley Gladwell, Oriana Yost, Heather Li, Whitney J. Bell, Shih-Heng Chen, James M. Ward, Steven R. Kleeberger, Michael A. Resnick & Daniel Menendez. (2023) APOBEC3G Is a p53-Dependent Restriction Factor in Respiratory Syncytial Virus Infection of Human Cells Included in the p53/Immune Axis. International Journal of Molecular Sciences 24:23, pages 16793.
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Tongtong Zhu, Guangyi Niu, Yuansheng Zhang, Ming Chen, Chuan-Yun Li, Lili Hao & Zhang Zhang. (2023) Host-mediated RNA editing in viruses. Biology Direct 18:1.
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Shousong Yue, Qiuxia He & Jean-François Picimbon. (2023) Lactobacillus for ribosome peptide editing cancer. Clinical and Translational Oncology 25:6, pages 1522-1544.
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Luana Xavier Soares Gomes Moura Fé, Eliane Pereira Cipolatti, Martina Costa Cerqueira Pinto, Suema Branco, Fábio César Sousa Nogueira, Gisela Maria Dellamora Ortiz, Anderson de Sá Pinheiro & Evelin Andrade Manoel. (2022) Enzymes in the time of COVID‐19: An overview about the effects in the human body, enzyme market, and perspectives for new drugs. Medicinal Research Reviews 42:6, pages 2126-2167.
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Huanyu Zhu, Xinhe Yin, Christopher L. Holley & Kate D. Meyer. (2022) Improved Methods for Deamination-Based m6A Detection. Frontiers in Cell and Developmental Biology 10.
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Aleksia Barka, Kiara N. Berríos, Peter Bailer, Emily K. Schutsky, Tong Wang & Rahul M. Kohli. (2022) The Base-Editing Enzyme APOBEC3A Catalyzes Cytosine Deamination in RNA with Low Proficiency and High Selectivity. ACS Chemical Biology 17:3, pages 629-636.
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O. N. Shilova, D. L. Tsyba & E. S. Shilov. (2022) Mutagenic Activity of AID/APOBEC Deaminases in Antiviral Defense and Carcinogenesis. Molecular Biology 56:1, pages 46-58.
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Simin Zhao, Baisong Zheng, Liuli Wang, Wenzhe Cui, Chunlai Jiang, Zhuo Li, Wenying Gao & Wenyan Zhang. (2022) Deubiquitinase ubiquitin-specific protease 3 (USP3) inhibits HIV-1 replication via promoting APOBEC3G (A3G) expression in both enzyme activity-dependent and -independent manners. Chinese Medical Journal Publish Ahead of Print.
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Jie Long, Nan Liu, Wenling Tang, Lifang Xie, Fengming Qin, Lifang Zhou, Rui Tao, Yanhong Wang, Yun Hu, Yaoge Jiao, Li Li, Lurong Jiang, Junyan Qu, Qiang Chen & Shaohua Yao. (2021) A split cytosine deaminase architecture enables robust inducible base editing. The FASEB Journal 35:12.
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Jeremy Ratcliff & Peter Simmonds. (2021) Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution. Virology 556, pages 62-72.
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Fareeda M. Barzak, Timothy M. Ryan, Maksim V. Kvach, Harikrishnan M. Kurup, Hideki Aihara, Reuben S. Harris, Vyacheslav V. Filichev, Elena Harjes & Geoffrey B. Jameson. (2021) Small-Angle X-ray Scattering Models of APOBEC3B Catalytic Domain in a Complex with a Single-Stranded DNA Inhibitor. Viruses 13:2, pages 290.
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Wendy Kaichun Xu, Hyewon Byun & Jaquelin P. Dudley. (2020) The Role of APOBECs in Viral Replication. Microorganisms 8:12, pages 1899.
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Vladislav Victorovich Khrustalev, Rajanish Giri, Tatyana Aleksandrovna Khrustaleva, Shivani Krishna Kapuganti, Aleksander Nicolaevich Stojarov & Victor Vitoldovich Poboinev. (2020) Translation-Associated Mutational U-Pressure in the First ORF of SARS-CoV-2 and Other Coronaviruses. Frontiers in Microbiology 11.
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Mark A Hix, Lai Wong, Ben Flath, Linda Chelico & G Andrés Cisneros. (2020) Single-nucleotide polymorphism of the DNA cytosine deaminase APOBEC3H haplotype I leads to enzyme destabilization and correlates with lung cancer. NAR Cancer 2:3.
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Giulia Romano, Michela Saviana, Patricia Le, Howard Li, Lavender Micalo, Giovanni Nigita, Mario Acunzo & Patrick Nana-Sinkam. (2020) Non-Coding RNA Editing in Cancer Pathogenesis. Cancers 12:7, pages 1845.
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Birte S. Steiniger, Linda Raimer, Anja Ecke, Boris A. Stuck & Yalcin Cetin. (2020) Plasma cells, plasmablasts, and AID+/CD30+ B lymphoblasts inside and outside germinal centres: details of the basal light zone and the outer zone in human palatine tonsils. Histochemistry and Cell Biology 154:1, pages 55-75.
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Mariana Acuña‐Aravena & David E. Cohen. 2020. The Liver. The Liver 255 267 .
Luis M. Cortez, Amber L. Brown, Madeline A. Dennis, Christopher D. Collins, Alexander J. Brown, Debra Mitchell, Tony M. Mertz & Steven A. Roberts. (2019) APOBEC3A is a prominent cytidine deaminase in breast cancer. PLOS Genetics 15:12, pages e1008545.
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Daniel Michalski, J. Gustavo Ontiveros, Joseph Russo, Phillida A. Charley, John R. Anderson, Adam M. Heck, Brian J. Geiss & Jeffrey Wilusz. (2019) Zika virus noncoding sfRNAs sequester multiple host-derived RNA-binding proteins and modulate mRNA decay and splicing during infection. Journal of Biological Chemistry 294:44, pages 16282-16296.
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Jason D. Salter, Bogdan Polevoda, Ryan P. Bennett & Harold C. Smith. 2019. Macromolecular Protein Complexes II: Structure and Function. Macromolecular Protein Complexes II: Structure and Function 193 219 .
Taga Lerner, F. Papavasiliou & Riccardo Pecori. (2018) RNA Editors, Cofactors, and mRNA Targets: An Overview of the C-to-U RNA Editing Machinery and Its Implication in Human Disease. Genes 10:1, pages 13.
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Zhaolong Li, Shanshan Ning, Xing Su, Xin Liu, Hong Wang, Yue Liu, Wenwen Zheng, Baisong Zheng, Xiao-Fang Yu & Wenyan Zhang. (2018) Enterovirus 71 antagonizes the inhibition of the host intrinsic antiviral factor A3G. Nucleic Acids Research 46:21, pages 11514-11527.
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Jason D. Salter & Harold C. Smith. (2018) Modeling the Embrace of a Mutator: APOBEC Selection of Nucleic Acid Ligands. Trends in Biochemical Sciences 43:8, pages 606-622.
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Madison B. Adolph, Robin P. Love & Linda Chelico. (2018) Biochemical Basis of APOBEC3 Deoxycytidine Deaminase Activity on Diverse DNA Substrates. ACS Infectious Diseases 4:3, pages 224-238.
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Elisa Orecchini, Loredana Frassinelli, Silvia Galardi, Silvia Anna Ciafrè & Alessandro Michienzi. (2018) Post-transcriptional regulation of LINE-1 retrotransposition by AID/APOBEC and ADAR deaminases. Chromosome Research 26:1-2, pages 45-59.
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Min Xiong, Daniel P. Heruth, Xun Jiang, Shamima Islam, Li Qin Zhang, Ding‐You Li & Shui Q. Ye. 2017. Applications of RNA-Seq and Omics Strategies - From Microorganisms to Human Health. Applications of RNA-Seq and Omics Strategies - From Microorganisms to Human Health.