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Mycologia Volume 95, 2003 - Issue 6
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Original Articles

New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex

Jolanta Miadlikowska Department of Biology, Duke University, Durham, North Carolina 27708-0338 and Department of Plant Taxonomy and Nature Conservation, Gdansk University, Al. Legionow 9, 80-441 Gdansk, Poland
,
François Lutzoni Department of Biology, Duke University, Durham, North Carolina 27708-0338
,
Trevor Goward Herbarium, Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 2B1, Canada
,
Stefan Zoller Department of Biology, Duke University, Durham, North Carolina 27708-0338
&
David Posada Variagenics, 60 Hampshire Street, Cambridge, Massachusettes 02139
Pages 1181-1203 | Accepted 13 Apr 2003, Published online: 31 Jan 2017

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María Prieto, Isabel Martínez, Gregorio Aragón, Mónica A.G. Otálora & François Lutzoni. (2010) Phylogenetic study of Catapyrenium s. str. (Verrucariaceae, lichen-forming Ascomycota) and related genus Placidiopsis. Mycologia 102:2, pages 291-304.
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A. Elizabeth Arnold, Daniel A. Henk, Rebecca L. Eells, François Lutzoni & Rytas Vilgalys. (2007) Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR. Mycologia 99:2, pages 185-206.
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József Geml, Donald D. Davis & David M. Geiser. (2005) Systematics of the genus Sphaerobolus based on molecular and morphological data, with the description of Sphaerobolus ingoldii sp. nov.. Mycologia 97:3, pages 680-694.
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Articles from other publishers (30)

Karla Veas-Mattheos, Katerin Almendras, Matías Pezoa, Cecilia Muster & Julieta Orlando. (2023) High Andean Steppes of Southern Chile Contain Little-Explored Peltigera Lichen Symbionts. Journal of Fungi 9:3, pages 372.
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Diego Leiva, Fernando Fernández-Mendoza, José Acevedo, Margarita Carú, Martin Grube & Julieta Orlando. (2021) The Bacterial Community of the Foliose Macro-lichen Peltigera frigida Is More than a Mere Extension of the Microbiota of the Subjacent Substrate. Microbial Ecology 81:4, pages 965-976.
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Liu-Fu HAN, Jing-Yuan YANG, Shu-Qing BEI & Shou-Yu GUO. (2019) Peltigera shennongjiana , a new cyanolichen from Central China . The Lichenologist 51:6, pages 561-574.
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Inga Jüriado, Ulla Kaasalainen, Maarit Jylhä & Jouko Rikkinen. (2019) Relationships between mycobiont identity, photobiont specificity and ecological preferences in the lichen genus Peltigera (Ascomycota) in Estonia (northeastern Europe). Fungal Ecology 39, pages 45-54.
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Katerin Almendras, Jaime García, Margarita Carú & Julieta Orlando. (2018) Nitrogen-Fixing Bacteria Associated with Peltigera Cyanolichens and Cladonia Chlorolichens. Molecules 23:12, pages 3077.
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Carlos José Pardo-De la Hoz, Nicolas Magain, François Lutzoni, Trevor Goward, Silvia Restrepo & Jolanta Miadlikowska. (2018) Contrasting Symbiotic Patterns in Two Closely Related Lineages of Trimembered Lichens of the Genus Peltigera. Frontiers in Microbiology 9.
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Katerin Almendras, Diego Leiva, Margarita Carú & Julieta Orlando. (2018) Carbon Consumption Patterns of Microbial Communities Associated with Peltigera Lichens from a Chilean Temperate Forest. Molecules 23:11, pages 2746.
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Nicolas MagainCamille Tniong, Trevor Goward, Dongling Niu, Bernard GoffinetEmmanuel Sérusiaux, Orvo Vitikainen, François Lutzoni & Jolanta Miadlikowska. (2018) Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in Peltigera section Peltigera (lichenized Ascomycota: Lecanoromycetes) . TAXON 67:5, pages 836-870.
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Jade Lu, Nicolas Magain, Jolanta Miadlikowska, Jessica R. Coyle, Camille Truong & François Lutzoni. (2018) Bioclimatic factors at an intrabiome scale are more limiting than cyanobiont availability for the lichen‐forming genus Peltigera . American Journal of Botany 105:7, pages 1198-1211.
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Sonia Ravera, Alfredo Vizzini, Annalena Cogoni, Michele Aleffi, Renato Benesperi, Elisabetta Bianchi, Wolfgang von Brackel, Daniela Cataldo, Costantino D'Antonio, Luca Di Nuzzo, Sergio Enrico Favero Longo, Gabriele Gheza, Deborah Isocrono, Enrica Matteucci, Stefano Martellos, Lorenzo Morosini, Pier Luigi Nimis, Silvia Ongaro, Silvia Poponessi, Domenico Puntillo, Francesco Sguazzin & Mauro Tretiach. (2018) Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 5. Italian Botanist 5, pages 31-43.
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Sonia Ravera, Alfredo Vizzini, Annalena Cogoni, Michele Aleffi, Renato Benesperi, Elisabetta Bianchi, Wolfgang von Brackel, Daniela Cataldo, Costantino D'Antonio, Luca Di Nuzzo, Sergio Enrico Favero Longo, Gabriele Gheza, Deborah Isocrono, Enrica Matteucci, Stefano Martellos, Lorenzo Morosini, Pier Luigi Nimis, Silvia Ongaro, Silvia Poponessi, Domenico Puntillo, Francesco Sguazzin & Mauro Tretiach. (2018) Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 5. Italian Botanist 5, pages 31-43.
Crossref
Sonia Ravera, Alfredo Vizzini, Annalena Cogoni, Michele Aleffi, Renato Benesperi, Elisabetta Bianchi, Wolfgang von Brackel, Daniela Cataldo, Costantino D'Antonio, Luca Di Nuzzo, Sergio Enrico Favero Longo, Gabriele Gheza, Deborah Isocrono, Enrica Matteucci, Stefano Martellos, Lorenzo Morosini, Pier Luigi Nimis, Silvia Ongaro, Silvia Poponessi, Domenico Puntillo, Francesco Sguazzin & Mauro Tretiach. (2018) Notulae to the Italian flora of algae, bryophytes, fungi and lichens: 5. Italian Botanist 5, pages 31-43.
Crossref
Inga Jüriado, Ulla Kaasalainen & Jouko Rikkinen. (2017) Specialist taxa restricted to threatened habitats contribute significantly to the regional diversity of Peltigera (Lecanoromycetes, Ascomycota) in Estonia. Fungal Ecology 30, pages 76-87.
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Sheeba S. MANOHARAN-BASIL, Jolanta MIADLIKOWSKA, Trevor GOWARD, Ólafur S. ANDRÉSSON & Vivian P. W. MIAO. (2016) Peltigera islandica , a new cyanolichen species in section Peltigera (‘ P. canina group’) . The Lichenologist 48:5, pages 451-467.
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Liu-Fu HAN, Ya-Ya ZHANG & Shou-Yu GUO. (2013) Peltigera wulingensis, a new lichen (Ascomycota) from north China . The Lichenologist 45:3, pages 329-336.
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Heath E. O'Brien, Jolanta Miadlikowska & François Lutzoni. (2013) Assessing population structure and host specialization in lichenized cyanobacteria. New Phytologist 198:2, pages 557-566.
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Steven D. Leavitt, Theodore L. Esslinger & H. Thorsten Lumbsch. (2012) Neogene‐dominated diversification in neotropical montane lichens: Dating divergence events in the lichen‐forming fungal genus Oropogon (Parmeliaceae) . American Journal of Botany 99:11, pages 1764-1777.
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James C. LENDEMER & Brendan P. HODKINSON. (2010) A new perspective on Punctelia subrudecta ( Parmeliaceae ) in North America: previously rejected morphological characters corroborate molecular phylogenetic evidence and provide insight into an old problem . The Lichenologist 42:4, pages 405-421.
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Christian Printzen. 2010. Progress in Botany, Vol. 71. Progress in Botany, Vol. 71 233 275 .
Heath E. O'Brien, Jolanta Miadlikowska & François Lutzoni. (2009) ASSESSING REPRODUCTIVE ISOLATION IN HIGHLY DIVERSE COMMUNITIES OF THE LICHEN-FORMING FUNGAL GENUS PELTIGERA . Evolution 63:8, pages 2076-2086.
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Sanja Savić & Leif Tibell. (2009) Taxonomy and species delimitation in Sporodictyon (Verrucariaceae) in Northern Europe and the adjacent Arctic-reconciling molecular and morphological data . TAXON 58:2, pages 585-605.
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AJ HarrisQiu-Yunjenny XiangDavid T. Thomas. (2009) Phylogeny, origin, and biogeographic history of Aesculus L. (Sapindales) - an update from combined analysis of DNA sequences, morphology, and fossils . TAXON 58:1, pages 108-126.
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Mónica A.G. Otálora, Isabel Martínez, Carmen M. Molina, Gregorio Aragón & François Lutzoni. (2008) Phylogenetic relationships and taxonomy of the Leptogium lichenoides group (Collemataceae, Ascomycota) in Europe . TAXON 57:3, pages 907-1E.
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Simon Creer. (2017) Choosing and Using Introns in Molecular Phylogenetics. Evolutionary Bioinformatics 3, pages 117693430700300.
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Wendy Gruner Graves, Bruce Peckham & John Pastor. (2006) A Bifurcation Analysis of a Differential Equations Model for Mutualism. Bulletin of Mathematical Biology 68:8, pages 1851-1872.
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Tina C. Summerfield & Julian J. Eaton‐Rye. (2006) Pseudocyphellaria crocata , P. neglecta and P. perpetua from the Northern and Southern Hemispheres are a phylogenetic species and share cyanobionts . New Phytologist 170:3, pages 597-607.
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Simon Creer, Catharine E. Pook, Anita Malhotra & Roger S. Thorpe. (2006) Optimal Intron Analyses in the Trimeresurus Radiation of Asian Pitvipers. Systematic Biology 55:1, pages 57-72.
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D. Krüger & A. Gargas. (2004) The basidiomycete genus Polyporus – an emendation based on phylogeny and putative secondary structure of ribosomal RNA molecules . Feddes Repertorium 115:7-8, pages 530-546.
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Jolanta Miadlikowska & François Lutzoni. (2004) Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits. American Journal of Botany 91:3, pages 449-464.
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Peik Haugen, Valérie Reeb, François Lutzoni & Debashish Bhattacharya. (2004) The Evolution of Homing Endonuclease Genes and Group I Introns in Nuclear rDNA. Molecular Biology and Evolution 21:1, pages 129-140.
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