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Epigenetics Volume 15, 2020 - Issue 4
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Research Paper

MBD-seq - realities of a misunderstood method for high-quality methylome-wide association studies

Karolina A. AbergCenter for Biomarker Research and Precision Medicine, School of Pharmacy, Virginia Commonwealth University, Richmond, VA, USACorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0001-6103-5168View further author information
ORCID Icon,
Robin F. ChanCenter for Biomarker Research and Precision Medicine, School of Pharmacy, Virginia Commonwealth University, Richmond, VA, USAORCID Iconhttps://orcid.org/0000-0002-1774-4087View further author information
ORCID Icon &
Edwin J. C. G. van den OordCenter for Biomarker Research and Precision Medicine, School of Pharmacy, Virginia Commonwealth University, Richmond, VA, USAView further author information
Pages 431-438 | Received 09 Jul 2019, Accepted 15 Nov 2019, Published online: 25 Nov 2019

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Shirley Chu, Anne Avery, Janna Yoshimoto & Jeffrey N. Bryan. (2022) Genome wide exploration of the methylome in aggressive B-cell lymphoma in Golden Retrievers reveals a conserved hypermethylome. Epigenetics 17:13, pages 2022-2038.
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Articles from other publishers (13)

F. Naya-Català, A. Belenguer, D. Montero, S. Torrecillas, B. Soriano, J. Calduch-Giner, C. Llorens, R. Fontanillas, S. Sarih, M. J. Zamorano, M. Izquierdo & J. Pérez-Sánchez. (2023) Broodstock nutritional programming differentially affects the hepatic transcriptome and genome-wide DNA methylome of farmed gilthead sea bream (Sparus aurata) depending on genetic background. BMC Genomics 24:1.
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John M. Hettema, Edwin J. C. G. van den Oord, Min Zhao, Lin Y. Xie, William E. Copeland, Brenda W. J. H. Penninx, Karolina A. Aberg & Shaunna L. Clark. (2023) Methylome-wide association study of anxiety disorders. Molecular Psychiatry 28:8, pages 3484-3492.
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Khyobeni Mozhui, James P. O’Callaghan, David G. Ashbrook, Pjotr Prins, Wenyuan Zhao, Lu Lu & Byron C. Jones. (2023) Epigenetic analysis in a murine genetic model of Gulf War illness. Frontiers in Toxicology 5.
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Edwin J. C. G. van den Oord, Lin Y. Xie, Min Zhao, Thomas L. Campbell, Gustavo Turecki, Anna K. Kähler, Brian Dean, Ole Mors, Christina M. Hultman, Nicklas H. Staunstrup & Karolina A. Aberg. (2023) Genes implicated by a methylome-wide schizophrenia study in neonatal blood show differential expression in adult brain samples. Molecular Psychiatry.
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William E. Copeland, Lilly Shanahan, Ellen W. McGinnis, Karolina A. Aberg & Edwin J.C.G. van den Oord. (2022) Early adversities accelerate epigenetic aging into adulthood: a 10‐year, within‐subject analysis. Journal of Child Psychology and Psychiatry 63:11, pages 1308-1315.
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Charlie L. J. D. van den Oord, William E. Copeland, Min Zhao, Lin Ying Xie, Karolina A. Aberg & Edwin J. C. G. van den Oord. (2022) DNA methylation signatures of childhood trauma predict psychiatric disorders and other adverse outcomes 17 years after exposure. Molecular Psychiatry 27:8, pages 3367-3373.
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Robin F. Chan, William E. Copeland, Min Zhao, Lin Y. Xie, Jane Costello, Karolina A. Aberg & Edwin J.C.G. Oord. (2021) A methylation study implicates the rewiring of brain neural circuits during puberty in the emergence of sex differences in depression symptoms. Journal of Child Psychology and Psychiatry 63:7, pages 802-809.
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Shaunna L. Clark, Robin F. Chan, Min Zhao, Lin Y. Xie, William E. Copeland, Brenda W. J. H. Penninx, Karolina A. Aberg & Edwin J. C. G. van den Oord. (2021) Dual methylation and hydroxymethylation study of alcohol use disorder. Addiction Biology 27:2.
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Anna Starnawska, Lina Bukowski, Ana Chernomorchenko, Betina Elfving, Heidi Kaastrup Müller, Edwin van den Oord, Karolina Aberg, Jerry Guintivano, Jakob Grove, Ole Mors, Anders D. Børglum, Anders L. Nielsen, Per Qvist & Nicklas Heine Staunstrup. (2021) DNA methylation of the KLK8 gene in depression symptomatology. Clinical Epigenetics 13:1.
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Edwin J. C. G. van den Oord, Lin Y. Xie, Charles J. Tran, Min Zhao & Karolina A. Aberg. (2021) A targeted solution for estimating the cell-type composition of bulk samples. BMC Bioinformatics 22:1.
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Miki Bundo, Junko Ueda, Yutaka Nakachi, Kiyoto Kasai, Tadafumi Kato & Kazuya Iwamoto. (2021) Decreased DNA methylation at promoters and gene-specific neuronal hypermethylation in the prefrontal cortex of patients with bipolar disorder. Molecular Psychiatry 26:7, pages 3407-3418.
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Yulan Qin, Ting Li, Hui Zhao, Zhanrui Mao, Chunxia Ding & Yani Kang. (2021) Integrated Transcriptomic and Epigenetic Study of PCOS: Impact of Map3k1 and Map1lc3a Promoter Methylation on Autophagy. Frontiers in Genetics 12.
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Julian Broche, Goran Kungulovski, Pavel Bashtrykov, Philipp Rathert & Albert Jeltsch. (2021) Genome-wide investigation of the dynamic changes of epigenome modifications after global DNA methylation editing. Nucleic Acids Research 49:1, pages 158-176.
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