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Nucleus Volume 6, 2015 - Issue 1
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Research Paper

Chromosome Conformation of Human Fibroblasts Grown in 3-Dimensional Spheroids

Haiming ChenDepartment of Computational Medicine & Bioinformatics; Medical School, University of Michigan; Ann Arbor, MIUSA
,
Nicholas CommentDepartment of Computational Medicine & Bioinformatics; Medical School, University of Michigan; Ann Arbor, MIUSA
,
Jie ChenDepartment of Computational Medicine & Bioinformatics; Medical School, University of Michigan; Ann Arbor, MIUSA;Department of Electrical Engineering and Computer Science, College of Engineering, University of Michigan, Ann Arbor, MI, USA
,
Scott RonquistDepartment of Computational Medicine & Bioinformatics; Medical School, University of Michigan; Ann Arbor, MIUSA
,
Alfred HeroDepartment of Computational Medicine & Bioinformatics; Medical School, University of Michigan; Ann Arbor, MIUSA;Department of Electrical Engineering and Computer Science, College of Engineering, University of Michigan, Ann Arbor, MI, USA;Department of Statistics; College of Literature; Science, and the Arts; University of Michigan; Ann Arbor, MIUSA;Department of Biomedical Engineering; College of Engineering; University of Michigan; Ann Arbor, MIUSA
,
Thomas RiedCenter for Cancer Research; National Cancer Institute; National Institutes of Health; Bethesda, MDUSA
&
Indika RajapakseDepartment of Computational Medicine & Bioinformatics; Medical School, University of Michigan; Ann Arbor, MIUSA;Department of Mathematics; College of Literature; Science, and the Arts; University of Michigan; Ann Arbor, MIUSA;Correspondence[email protected]
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Pages 55-65 | Received 11 Aug 2014, Accepted 09 Nov 2014, Published online: 04 Mar 2015

Citations (8)

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Read on this site (2)

Haiming Chen, Laura Seaman, Sijia Liu, Thomas Ried & Indika Rajapakse. (2017) Chromosome conformation and gene expression patterns differ profoundly in human fibroblasts grown in spheroids versus monolayers. Nucleus 8:4, pages 383-391.
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Joanna M. Bridger & Ian R. Kill. (2016) A structured environment helps to regulate nuclear architecture in breast epithelial cells. Cell Cycle 15:9, pages 1178-1179.
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Articles from other publishers (6)

Xin Liu, Qiu Sun, Qi Wang, Chuansheng Hu, Xuecheng Chen, Hua Li, Daniel M. Czajkowsky & Zhifeng Shao. (2022) Epithelial Cells in 2D and 3D Cultures Exhibit Large Differences in Higher-order Genomic Interactions. Genomics, Proteomics & Bioinformatics 20:1, pages 101-109.
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Anna Zlotina, Antonina Maslova, Nadezda Kosyakova, Ahmed B. Hamid Al-Rikabi, Thomas Liehr & Alla Krasikova. (2018) Heterochromatic regions in Japanese quail chromosomes: comprehensive molecular-cytogenetic characterization and 3D mapping in interphase nucleus. Chromosome Research 27:3, pages 253-270.
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Roopali Pradhan & Kundan Sengupta. 2019. Imaging Gene Expression. Imaging Gene Expression 181 197 .
Laura Seaman, Haiming Chen, Markus Brown, Darawalee Wangsa, Geoff Patterson, Jordi Camps, Gilbert S. Omenn, Thomas Ried & Indika Rajapakse. (2017) Nucleome Analysis Reveals Structure–Function Relationships for Colon Cancer. Molecular Cancer Research 15:7, pages 821-830.
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Scott Ronquist, Walter Meixner, Indika Rajapakse & John Snyder. (2017) Insight into dynamic genome imaging: Canonical framework identification and high-throughput analysis. Methods 123, pages 119-127.
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Jie Chen, Alfred O. HeroIIIIII & Indika Rajapakse. (2016) Spectral identification of topological domains. Bioinformatics 32:14, pages 2151-2158.
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