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A structure-based kinetic model of transcription

Yuhong ZuoDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USACorrespondence[email protected]

Thomas A. SteitzDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA;Howard Hughes Medical Institute, New Haven, CT, USA;Department of Chemistry, Yale University, New Haven, CT, USA

Pages 1-8 | Received 28 Jul 2016, Accepted 31 Aug 2016, Published online: 01 Nov 2016

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https://doi.org/10.1080/21541264.2016.1234821
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Ludmila V. Yakushevich & Larisa A. Krasnobaeva. (2021) Ideas and methods of nonlinear mathematics and theoretical physics in DNA science: the McLaughlin-Scott equation and its application to study the DNA open state dynamics. Biophysical Reviews 13:3, pages 315-338.
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Jin Qian, David Dunlap & Laura Finzi. (2021) Basic mechanisms and kinetics of pause-interspersed transcript elongation. Nucleic Acids Research 49:1, pages 15-24.
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Yuhong Zuo, Swastik De, Yingang Feng & Thomas A. Steitz. (2020) Structural Insights into Transcription Initiation from De Novo RNA Synthesis to Transitioning into Elongation. iScience 23:9, pages 101445.
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Subrata Pal. 2020. Fundamentals of Molecular Structural Biology. Fundamentals of Molecular Structural Biology 217 276 .

L.V. Yakushevich & L.A. Krasnobaeva. (2019) Plasmid pBR322 and Nonlinear Conformational Distortions (Kinks). Mathematical Biology and Bioinformatics 14:1, pages 327-339.
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Amber Riaz-Bradley. (2019) Transcription in cyanobacteria: a distinctive machinery and putative mechanisms. Biochemical Society Transactions 47:2, pages 679-689.
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Komlan AtiteyPavel LoskotPaul Rees. (2018) Determining the Transcription Rates Yielding Steady-State Production of mRNA in the Lac Genetic Switch of Escherichia coli . Journal of Computational Biology 25:9, pages 1023-1039.
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