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YEATS domain: Linking histone crotonylation to gene regulation

Yuanyuan LiMOE Key Laboratory of Protein Sciences, Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing, P.R.China

Dan ZhaoMOE Key Laboratory of Protein Sciences, Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing, P.R.China

Zhonglei ChenMOE Key Laboratory of Protein Sciences, Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing, P.R.China

Haitao LiMOE Key Laboratory of Protein Sciences, Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing, P.R.ChinaCorrespondence[email protected]

Pages 9-14 | Received 31 Aug 2016, Accepted 19 Sep 2016, Published online: 01 Nov 2016

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https://doi.org/10.1080/21541264.2016.1239602
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Pengfei Ji, Guokun Zhang, Yanan Guo, Haoyun Song, Xinyi Yuan, Xiaohui Hu, Zhao Guo, Peng Xia, Rong Shen & Degui Wang. (2023) Protein crotonylation: An emerging regulator in DNA damage response. Life Sciences 331, pages 122059.
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Tian Lan, Hang-fei Chen, Fang Zheng, Hui Huang, Qi Wu, Xue-yu Fan, Si-wei Wang & Feng Zhang. (2023) Cinobufacini retards progression of pancreatic ductal adenocarcinoma through targeting YEATS2/TAK1/NF-κB axis. Phytomedicine 109, pages 154564.
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Christopher R. Travis, Denver Y. Francis, David C. WilliamsJr.Jr. & Marcey L. Waters. (2022) Evaluation of acyllysine isostere interactions with the aromatic pocket of the AF9 YEATS domain . Protein Science 32:1.
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Yaqian Liu, Ruoxing Jin, Hui Lu, Kangjie Bian, Rui Wang, Lei Wang, Rui Gao, Jiahai Zhang, Jihui Wu, Xuebiao Yao, Xing Liu, Dan Liu, Xisheng Wang, Zhiyong Zhang & Ke Ruan. (2022) Fragment-Based Discovery of AF9 YEATS Domain Inhibitors. International Journal of Molecular Sciences 23:7, pages 3893.
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Perla A. Contreras-de la Rosa, Centeotl Aragón-Rodríguez, Jaime A. Ceja-López, Kimberly F. García-Arteaga & C. De-la-Peña. (2022) Lysine crotonylation: A challenging new player in the epigenetic regulation of plants. Journal of Proteomics 255, pages 104488.
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Ranchana Yeewa, Pawita Chaiya, Salinee Jantrapirom, Vorasuk Shotelersuk & Luca Lo Piccolo. (2022) Multifaceted roles of YEATS domain-containing proteins and novel links to neurological diseases. Cellular and Molecular Life Sciences 79:3.
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Jibo Zhang, Aakanksha Gundu & Brian D. Strahl. (2021) Recognition of acetylated histone by Yaf9 regulates metabolic cycling of transcription initiation and chromatin regulatory factors. Genes & Development 35:23-24, pages 1678-1692.
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Paul B. TalbertSteven Henikoff. (2021) The Yin and Yang of Histone Marks in Transcription. Annual Review of Genomics and Human Genetics 22:1, pages 147-170.
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Isabelle A. Engelberg, Caroline A. Foley, Lindsey I. James & Stephen V. Frye. (2021) Improved methods for targeting epigenetic reader domains of acetylated and methylated lysine. Current Opinion in Chemical Biology 63, pages 132-144.
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Xiaomin Ni, Allyn T. Londregan, Dafydd R. Owen, Stefan Knapp & Apirat Chaikuad. (2021) Structure and Inhibitor Binding Characterization of Oncogenic MLLT1 Mutants. ACS Chemical Biology 16:4, pages 571-578.
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Angeliki Ntorla & Joseph Robert Burgoyne. (2021) The Regulation and Function of Histone Crotonylation. Frontiers in Cell and Developmental Biology 9.
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Chenxi Li, Shaonan Hou, Xiaoyu Ma, Jiajia Li, Liang Huo, Ping Zhang, Xiaoran Hao & Xudong Zhu. (2021) Epigenetic regulation of virulence and the transcription of ribosomal protein genes involves a YEATS family protein in Cryptococcus deneoformans . FEMS Yeast Research 21:1.
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Mackenzie W. Krone, Christopher R. Travis, Ga Young Lee, Hannah J. Eckvahl, K. N. Houk & Marcey L. Waters. (2020) More Than π–π–π Stacking: Contribution of Amide−π and CH−π Interactions to Crotonyllysine Binding by the AF9 YEATS Domain. Journal of the American Chemical Society 142:40, pages 17048-17056.
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Jiang‐Feng Liu, Song‐Feng Wu, Shu Liu, Xin Sun, Xiao‐Man Wang, Ping Xu, Hou‐Zao Chen & Jun‐Tao Yang. (2020) Global Lysine Crotonylation Profiling of Mouse Liver. PROTEOMICS 20:19-20.
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Yue Lu, Dao-Xiu Zhou & Yu Zhao. (2020) Understanding epigenomics based on the rice model. Theoretical and Applied Genetics 133:5, pages 1345-1363.
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Qiangzhen Yang, Xurui Liu, Jun Chen, Yi Wen, Huan Liu, Zijun Peng, Ranna Yeerken, Lirui Wang & Xinhong Li. (2020) Lead-mediated inhibition of lysine acetylation and succinylation causes reproductive injury of the mouse testis during development. Toxicology Letters 318, pages 30-43.
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Xiaomin Ni, David Heidenreich, Thomas ChristottJames BennettMoses MoustakimPaul E. Brennan, Oleg FedorovStefan Knapp & Apirat Chaikuad. (2019) Structural Insights into Interaction Mechanisms of Alternative Piperazine-urea YEATS Domain Binders in MLLT1. ACS Medicinal Chemistry Letters 10:12, pages 1661-1666.
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Hyo Je Cho, Hao Li, Brian M. Linhares, EunGi Kim, Juliano Ndoj, Hongzhi Miao, Jolanta Grembecka & Tomasz Cierpicki. (2018) GAS41 Recognizes Diacetylated Histone H3 through a Bivalent Binding Mode. ACS Chemical Biology 13:9, pages 2739-2746.
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Guochun Jiang, Don Nguyen, Nancie M. Archin, Steven A. Yukl, Gema Méndez-Lagares, Yuyang Tang, Maher M. Elsheikh, George R. ThompsonIIIIII, Dennis J. Hartigan-O’Connor, David M. Margolis, Joseph K. Wong & Satya Dandekar. (2018) HIV latency is reversed by ACSS2-driven histone crotonylation. Journal of Clinical Investigation 128:3, pages 1190-1198.
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Rui Liu, Xueqin Li, Wei Chen & Jiamu Du. (2017) Structure and mechanism of plant histone mark readers. Science China Life Sciences 61:2, pages 170-177.
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Sheqing Ji, Youxiang Zhang & Binhai Yang. (2017) YEATS Domain Containing 4 Promotes Gastric Cancer Cell Proliferation and Mediates Tumor Progression via Activating the Wnt/β-Catenin Signaling Pathway. Oncology Research Featuring Preclinical and Clinical Cancer Therapeutics 25:9, pages 1633-1641.
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Wei Wei, Xiaoguang Liu, Jiwei Chen, Shennan Gao, Lu Lu, Huifang Zhang, Guangjin Ding, Zhiqiang Wang, Zhongzhou Chen, Tieliu Shi, Jiwen Li, Jianjun Yu & Jiemin Wong. (2017) Class I histone deacetylases are major histone decrotonylases: evidence for critical and broad function of histone crotonylation in transcription. Cell Research 27:7, pages 898-915.
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