Advanced search
Publication Cover
Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 30, 2019 - Issue 1
Submit an article Journal homepage
737
Views
16
CrossRef citations to date
0
Altmetric
Research Article

High-throughput terrestrial biodiversity assessments: mitochondrial metabarcoding, metagenomics or metatranscriptomics?

John-James Wilsona School of Applied Sciences, Faculty of Computing, Engineering and Science, University of South Wales, Pontypridd, UK; ;b Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, Thailand; ;c International College Beijing, China Agricultural University, Beijing, PR China; Correspondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-3583-3550View further author information
ORCID Icon,
Guo-Jie Brandon-Mongd Biodiversity Research Center, Academia Sinica, Taipei, Taiwan; ;e Faculty of Science, Institute of Biological Sciences, University of Malaya, Kuala Lumpur, Malaysia; View further author information
,
Han-Ming Ganf School of Life and Environmental Sciences, Centre for Integrative Ecology, Deakin University, Geelong, Australia; ;g Genomics Facility, Tropical and Medicine Biology Platform, Monash University Malaysia, Petaling Jaya, Malaysia; ;h School of Science, Monash University Malaysia, Petaling Jaya, Malaysia; View further author information
&
Kong-Wah Singi South China DNA Barcoding Center, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, PR ChinaCorrespondence[email protected]
View further author information
Pages 60-67 | Received 23 Oct 2017, Accepted 17 Mar 2018, Published online: 29 Mar 2018

Citations (16)

Keep up to date with the latest research on this topic with citation updates for this article.

Subscribe to citation updates

Read on this site (1)

Julia Lanner, Manuel Curto, Bärbel Pachinger, Ulrich Neumüller & Harald Meimberg. (2019) Illumina midi-barcodes: quality proof and applications. Mitochondrial DNA Part A 30:3, pages 490-499.
Read now

Articles from other publishers (15)

Paul D. N. Hebert, Dan G. Bock & Sean W. J. Prosser. (2023) Interrogating 1000 insect genomes for NUMTs: A risk assessment for estimates of species richness. PLOS ONE 18:6, pages e0286620.
Crossref
Lucia Giagnoni, Saptarathi Deb, Alessandra Tondello, Giulia Zardinoni, Michele De Noni, Cinzia Franchin, Alice Vanzin, Giorgio Arrigoni, Antonio Masi, Piergiorgio Stevanato, Alessio Cecchinato, Andrea Squartini & Carlo Spanu. (2023) The impact of milk storage temperatures on cheese quality and microbial communities at dairy processing plant scale. Food Research International, pages 113101.
Crossref
Ashwini A. Waoo, Charu Vyas, Gaurav Kant, Sameer Srivastava & Ashutosh Pandey. 2023. Lakes of Africa. Lakes of Africa 73 95 .
Tian‐Chu Li, Yun‐Heng Miao, Tao Wang, Guo‐Hao Zu, Da‐Wei Huang & Jin‐Hua Xiao. (2022) Impact of mitotype diversity on metabarcoding biodiversity estimations in Insecta and Arachnida using different sample preparation strategies. Molecular Ecology Resources 22:8, pages 2967-2980.
Crossref
Victor Lobanov, Angélique Gobet & Alyssa Joyce. (2022) Ecosystem-specific microbiota and microbiome databases in the era of big data. Environmental Microbiome 17:1.
Crossref
Laura Biessy, John K. Pearman, Sean Waters, Marcus J. Vandergoes & Susanna A. Wood. (2022) Metagenomic insights to the functional potential of sediment microbial communities in freshwater lakes. Metabarcoding and Metagenomics 6.
Crossref
Babett Günther, Sophie Marre, Clémence Defois, Thomas Merzi, Philippe Blanc, Pierre Peyret & Sophie Arnaud‐Haond. (2021) Capture by hybridization for full‐length barcode‐based eukaryotic and prokaryotic biodiversity inventories of deep sea ecosystems. Molecular Ecology Resources 22:2, pages 623-637.
Crossref
Cameron M. Nugent, Tyler A. Elliott, Sujeevan Ratnasingham, Paul D.N. Hebert & Sarah J. Adamowicz. (2021) Debar: A sequence‐by‐sequence denoiser for COI‐5P DNA barcode data. Molecular Ecology Resources 21:8, pages 2832-2846.
Crossref
Natalie R. Graham, Rosemary G. Gillespie & Henrik Krehenwinkel. (2021) Towards eradicating the nuisance of numts and noise in molecular biodiversity assessment. Molecular Ecology Resources 21:6, pages 1755-1758.
Crossref
Patrick A. LeggieriYiyi Liu, Madeline HayesBryce Connors, Susanna SeppäläMichelle A. O'MalleyOphelia S. Venturelli. (2021) Integrating Systems and Synthetic Biology to Understand and Engineer Microbiomes. Annual Review of Biomedical Engineering 23:1, pages 169-201.
Crossref
Anthony Pius Bassey, Keping Ye, Chunbao Li & Guanghong Zhou. (2021) Transcriptomic-proteomic integration: A powerful synergy to elucidate the mechanisms of meat spoilage in the cold chain. Trends in Food Science & Technology 113, pages 12-25.
Crossref
Eric Capo, Charline Giguet-Covex, Alexandra Rouillard, Kevin Nota, Peter D. Heintzman, Aurèle Vuillemin, Daniel Ariztegui, Fabien Arnaud, Simon Belle, Stefan Bertilsson, Christian Bigler, Richard Bindler, Antony G. Brown, Charlotte L. Clarke, Sarah E. Crump, Didier Debroas, Göran Englund, Gentile Francesco Ficetola, Rebecca E. Garner, Joanna Gauthier, Irene Gregory-Eaves, Liv Heinecke, Ulrike Herzschuh, Anan Ibrahim, Veljo Kisand, Kurt H. Kjær, Youri Lammers, Joanne Littlefair, Erwan Messager, Marie-Eve Monchamp, Fredrik Olajos, William Orsi, Mikkel W. Pedersen, Dilli P. Rijal, Johan Rydberg, Trisha Spanbauer, Kathleen R. Stoof-Leichsenring, Pierre Taberlet, Liisi Talas, Camille Thomas, David A. Walsh, Yucheng Wang, Eske Willerslev, Anne van Woerkom, Heike H. Zimmermann, Marco J. L. Coolen, Laura S. Epp, Isabelle Domaizon, Inger G. Alsos & Laura Parducci. (2021) Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations. Quaternary 4:1, pages 6.
Crossref
Cameron M. Nugent & Sarah J. Adamowicz. (2020) Alignment-free classification of COI DNA barcode data with the Python package Alfie. Metabarcoding and Metagenomics 4.
Crossref
Daniel Marquina, Rodrigo Esparza‐Salas, Tomas Roslin & Fredrik Ronquist. (2019) Establishing arthropod community composition using metabarcoding: Surprising inconsistencies between soil samples and preservative ethanol and homogenate from Malaise trap catches. Molecular Ecology Resources 19:6, pages 1516-1530.
Crossref
Morgan Gueuning, Dominik Ganser, Simon Blaser, Matthias Albrecht, Eva Knop, Christophe Praz & Juerg E. Frey. (2019) Evaluating next‐generation sequencing (NGS) methods for routine monitoring of wild bees: Metabarcoding, mitogenomics or NGS barcoding. Molecular Ecology Resources 19:4, pages 847-862.
Crossref

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.