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Original Articles

SYNTHESIS OF SPIN-LABELED RNAS FOR LONG RANGE DISTANCE MEASUREMENTS BY PELDOR

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Pages 771-775 | Published online: 15 Nov 2011

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Olga Frolow, BelaE. Bode & JoachimW. Engels. (2007) The Synthesis Of Epr Differentiable Spinlabels And Their Coupling To Uridine. Nucleosides, Nucleotides & Nucleic Acids 26:6-7, pages 655-659.
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Robert Dörrenhaus, Philip K. Wagner & Stephanie Kath-Schorr. (2023) Two are not enough: synthetic strategies and applications of unnatural base pairs. Biological Chemistry 0:0.
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Frank Kaiser, Burkhard Endeward, Alberto Collauto, Ute Scheffer, Thomas F. Prisner & Michael W. Göbel. (2022) Spin‐Labeled Riboswitch Synthesized from a Protected TPA Phosphoramidite Building Block. Chemistry – A European Journal 28:56.
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Christof Domnick, Frank Eggert, Christine Wuebben, Lisa Bornewasser, Gregor Hagelueken, Olav Schiemann & Stephanie Kath‐Schorr. (2020) EPR Distance Measurements on Long Non‐coding RNAs Empowered by Genetic Alphabet Expansion Transcription. Angewandte Chemie International Edition 59:20, pages 7891-7896.
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Christof Domnick, Frank Eggert, Christine Wuebben, Lisa Bornewasser, Gregor Hagelueken, Olav Schiemann & Stephanie Kath‐Schorr. (2020) EPR Distance Measurements on Long Non‐coding RNAs Empowered by Genetic Alphabet Expansion Transcription. Angewandte Chemie 132:20, pages 7965-7970.
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Christof Domnick, Gregor Hagelueken, Frank Eggert, Olav Schiemann & Stephanie Kath-Schorr. (2019) Posttranscriptional spin labeling of RNA by tetrazine-based cycloaddition. Organic & Biomolecular Chemistry 17:7, pages 1805-1808.
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Yuri D. Tsvetkov, Michael K. Bowman & Yuri A. GrishinYuri D. Tsvetkov, Michael K. Bowman & Yuri A. Grishin. 2019. Pulsed Electron–Electron Double Resonance. Pulsed Electron–Electron Double Resonance 95 116 .
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Stephanie Kath-Schorr. (2015) Cycloadditions for Studying Nucleic Acids. Topics in Current Chemistry 374:1.
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Dnyaneshwar B Gophane & Snorri Th Sigurdsson. (2015) TEMPO-derived spin labels linked to the nucleobases adenine and cytosine for probing local structural perturbations in DNA by EPR spectroscopy. Beilstein Journal of Organic Chemistry 11, pages 219-227.
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B. Endeward, A. Marko, V.P. Denysenkov, S.Th. Sigurdsson & T.F. Prisner. 2015. Electron Paramagnetic Resonance Investigations of Biological Systems by Using Spin Labels, Spin Probes, and Intrinsic Metal Ions, Part B. Electron Paramagnetic Resonance Investigations of Biological Systems by Using Spin Labels, Spin Probes, and Intrinsic Metal Ions, Part B 403 425 .
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Joachim W. Engels, Christian Grünewald & Lena Wicke. 2014. Chemical Biology of Nucleic Acids. Chemical Biology of Nucleic Acids 385 407 .
Olga Romainczyk, Xavier Elduque & Joachim W. Engels. (2012) Attachment of Nitroxide Spin Labels to Nucleic Acids for EPR. Current Protocols in Nucleic Acid Chemistry 49:1.
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Lena Wicke & Joachim W. Engels. (2012) Postsynthetic on Column RNA Labeling via Stille Coupling. Bioconjugate Chemistry 23:3, pages 627-642.
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Gunnar W. Reginsson & Olav Schiemann. (2011) Studying biomolecular complexes with pulsed electron–electron double resonance spectroscopy. Biochemical Society Transactions 39:1, pages 128-139.
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Dorith Wunnicke, Denise Strohbach, Julia E. Weigand, Bettina Appel, Emiliano Feresin, Beatrix Suess, Sabine Müller & Heinz-Jürgen Steinhoff. (2011) Ligand-induced conformational capture of a synthetic tetracycline riboswitch revealed by pulse EPR. RNA 17:1, pages 182-188.
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N. A. Kuznetsov, A. D. Milov, N. P. Isaev, Yu. N. Vorobjev, V. V. Koval, S. A. Dzuba, O. S. Fedorova & Yu. D. Tsvetkov. (2011) PELDOR analysis of enzyme-induced structural changes in damaged DNA duplexes. Molecular BioSystems 7:9, pages 2670.
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Ivan Krstić, Burkhard Endeward, Dominik Margraf, Andriy Marko & Thomas F. Prisner. 2012. EPR Spectroscopy. EPR Spectroscopy 159 198 .
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Johann P. Klare & Heinz-Jürgen Steinhoff. (2009) Spin labeling EPR. Photosynthesis Research 102:2-3, pages 377-390.
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Nikita A. Kuznetsov, Alexandr D. Milov, Vladimir V. Koval, Rimma I. Samoilova, Yuri A. Grishin, Dmitry G. Knorre, Yuri D. Tsvetkov, Olga S. Fedorova & Sergei A. Dzuba. (2009) PELDOR study of conformations of double-spin-labeled single- and double-stranded DNA with non-nucleotide inserts. Physical Chemistry Chemical Physics 11:31, pages 6826.
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Samra Obeid, Maxim Yulikov, Gunnar Jeschke & Andreas Marx. (2008) Enzymatic Synthesis of Multiple Spin-Labeled DNA. Angewandte Chemie International Edition 47:36, pages 6782-6785.
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Samra Obeid, Maxim Yulikov, Gunnar Jeschke & Andreas Marx. (2008) Enzymatische Synthese mehrfach spinmarkierter DNA. Angewandte Chemie 120:36, pages 6886-6890.
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Richard Ward, David J. Keeble, Hassane El-Mkami & David G. Norman. (2007) Distance Determination in Heterogeneous DNA Model Systems by Pulsed EPR. ChemBioChem 8:16, pages 1957-1964.
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Zhongyu Yang, James Becker & Sunil Saxena. (2007) On Cu(II)–Cu(II) distance measurements using pulsed electron electron double resonance. Journal of Magnetic Resonance 188:2, pages 337-343.
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Qi Cai, Ana Karin Kusnetzow, Kálmán Hideg, Eric A. Price, Ian S. Haworth & Peter Z. Qin. (2007) Nanometer Distance Measurements in RNA Using Site-Directed Spin Labeling. Biophysical Journal 93:6, pages 2110-2117.
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Eric A. Price, Brian T. Sutch, Qi Cai, Peter Z. Qin & Ian S. Haworth. (2007) Computation of nitroxide-nitroxide distances in spin-labeled DNA duplexes. Biopolymers 87:1, pages 40-50.
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Nelly Piton, Yuguang Mu, Gerhard Stock, Thomas F. Prisner, Olav Schiemann & Joachim W. Engels. (2007) Base-specific spin-labeling of RNA for structure determination. Nucleic Acids Research 35:9, pages 3128-3143.
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Bela E. Bode, Dominik Margraf, Jörn Plackmeyer, Gerd Dürner, Thomas F. Prisner & Olav Schiemann. (2007) Counting the Monomers in Nanometer-Sized Oligomers by Pulsed Electron−Electron Double Resonance. Journal of the American Chemical Society 129:21, pages 6736-6745.
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Olav Schiemann, Nelly Piton, Jörn Plackmeyer, Bela E Bode, Thomas F Prisner & Joachim W Engels. (2007) Spin labeling of oligonucleotides with the nitroxide TPA and use of PELDOR, a pulse EPR method, to measure intramolecular distances. Nature Protocols 2:4, pages 904-923.
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Olav Schiemann & Thomas F. Prisner. (2007) Long-range distance determinations in biomacromolecules by EPR spectroscopy. Quarterly Reviews of Biophysics 40:1, pages 1-53.
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Qi Cai, Ana Karin Kusnetzow, Wayne L. Hubbell, Ian S. Haworth, Gian Paola C. Gacho, Ned Van Eps, Kálmán Hideg, Eric J. Chambers & Peter Z. Qin. (2006) Site-directed spin labeling measurements of nanometer distances in nucleic acids using a sequence-independent nitroxide probe. Nucleic Acids Research 34:17, pages 4722-4730.
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