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Molecular and Cellular Biology Volume 26, 2006 - Issue 17
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Article

Upf1, an RNA Helicase Required for Nonsense-Mediated mRNA Decay, Modulates the Transcriptional Response to Oxidative Stress in Fission Yeast

Miguel A. Rodríguez-Gabriel1 Department of Molecular Biology;4 Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid, 28040Madrid, Spain
,
Stephen Watt3 The Wellcome Trust Sanger Institute, Hinxton, CambridgeCB10 1SA, United Kingdom
,
Jürg Bähler3 The Wellcome Trust Sanger Institute, Hinxton, CambridgeCB10 1SA, United Kingdom
&
Paul Russell1 Department of Molecular Biology;2 Department of Cell Biology, The Scripps Research Institute, La Jolla, California92037Correspondence[email protected]
Pages 6347-6356 | Received 15 Feb 2006, Accepted 16 Jun 2006, Published online: 27 Mar 2023

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Manos A. Papadakis & Christopher T. Workman. (2015) Oxidative stress response pathways: Fission yeast as archetype. Critical Reviews in Microbiology 41:4, pages 520-535.
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Aleksandra Siwaszek, Marta Ukleja & Andrzej Dziembowski. (2014) Proteins involved in the degradation of cytoplasmic mRNA in the major eukaryotic model systems. RNA Biology 11:9, pages 1122-1136.
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Samuel Marguerat, Katherine Lawler, Alvis Brazma & Jürg Bähler. (2014) Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress. RNA Biology 11:6, pages 702-714.
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Ana M. Matia-González, Ayesha Hasan, Gøril H. Moe, Juan Mata & Miguel A. Rodríguez-Gabriel. (2013) Functional characterization of Upf1 targets in Schizosaccharomyces pombe. RNA Biology 10:6, pages 1057-1065.
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Si Young Lee, Sophie Rozenzhak & Paul Russell. (2013) γH2A-Binding Protein Brc1 Affects Centromere Function in Fission Yeast. Molecular and Cellular Biology 33:7, pages 1410-1416.
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Jennifer S. Gewandter, Robert A. Bambara & Michael A. O’Reilly. (2011) The RNA surveillance protein SMG1 activates p53 in response to DNA double-strand breaks but not exogenously oxidized mRNA. Cell Cycle 10:15, pages 2561-2567.
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Lawrence B. Gardner. (2008) Hypoxic Inhibition of Nonsense-Mediated RNA Decay Regulates Gene Expression and the Integrated Stress Response . Molecular and Cellular Biology 28:11, pages 3729-3741.
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Mariana Hernández-Elvira & Per Sunnerhagen. (2022) Post-transcriptional regulation during stress. FEMS Yeast Research 22:1.
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Hanna Alalam, Jorge A. Zepeda-Martínez & Per Sunnerhagen. (2022) Global SLAM-seq for accurate mRNA decay determination and identification of NMD targets. RNA 28:6, pages 905-915.
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Sandip De, David M Edwards, Vibha Dwivedi, Jianming Wang, Wazeer Varsally, Hannah L Dixon, Anand K Singh, Precious O Owuamalam, Matthew T Wright, Reece P Summers, Md Nazmul Hossain, Emily M Price, Marcin W Wojewodzic, Francesco Falciani, Nikolas J Hodges, Marco Saponaro, Kayoko Tanaka, Claus M Azzalin, Peter Baumann, Daniel Hebenstreit & Saverio Brogna. (2022) Genome-wide chromosomal association of Upf1 is linked to Pol II transcription in Schizosaccharomyces pombe . Nucleic Acids Research 50:1, pages 350-367.
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Sara Andjus, Antonin Morillon & Maxime Wery. (2021) From Yeast to Mammals, the Nonsense-Mediated mRNA Decay as a Master Regulator of Long Non-Coding RNAs Functional Trajectory. Non-Coding RNA 7:3, pages 44.
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Takashi Ishii & Mutsuo Sekiguchi. (2019) Two ways of escaping from oxidative RNA damage: Selective degradation and cell death. DNA Repair 81, pages 102666.
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Clara Chicois, Hélène Scheer, Shahïnez Garcia, Hélène Zuber, Jérôme Mutterer, Johana Chicher, Philippe Hammann, Dominique Gagliardi & Damien Garcia. (2018) The UPF1 interactome reveals interaction networks between RNA degradation and translation repression factors in Arabidopsis. The Plant Journal 96:1, pages 119-132.
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Sophie R. Atkinson, Samuel Marguerat, Danny A. Bitton, Maria Rodríguez-López, Charalampos Rallis, Jean-François Lemay, Cristina Cotobal, Michal Malecki, Pawel Smialowski, Juan Mata, Philipp Korber, François Bachand & Jürg Bähler. (2018) Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast. RNA 24:9, pages 1195-1213.
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Geetha Melangath, Titash Sen, Rakesh Kumar, Pushpinder Bawa, Subha Srinivasan & Usha Vijayraghavan. (2017) Functions for fission yeast splicing factors SpSlu7 and SpPrp18 in alternative splice-site choice and stress-specific regulated splicing. PLOS ONE 12:12, pages e0188159.
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Alexandra E. Goetz & Miles Wilkinson. (2017) Stress and the nonsense-mediated RNA decay pathway. Cellular and Molecular Life Sciences 74:19, pages 3509-3531.
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Nur H. Jamar, Paraskevi Kritsiligkou & Chris M. Grant. (2017) The non-stop decay mRNA surveillance pathway is required for oxidative stress tolerance. Nucleic Acids Research 45:11, pages 6881-6893.
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Lei Chang, Cuicui Li, Tao Guo, Haitao Wang, Weijie Ma, Yufeng Yuan, Quanyan Liu, Qifa Ye & Zhisu Liu. (2016) The human RNA surveillance factor UPF1 regulates tumorigenesis by targeting Smad7 in hepatocellular carcinoma. Journal of Experimental & Clinical Cancer Research 35:1.
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Atsuko Miki, Josephine Galipon, Satoshi Sawai, Toshifumi Inada & Kunihiro Ohta. (2016) RNA decay systems enhance reciprocal switching of sense and antisense transcripts in response to glucose starvation. Genes to Cells 21:12, pages 1276-1289.
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Sara Gonzalez-Hilarion, Damien Paulet, Kyung-Tae Lee, Chung-Chau Hon, Pierre Lechat, Estelle Mogensen, Frédérique Moyrand, Caroline Proux, Rony Barboux, Giovanni Bussotti, Jungwook Hwang, Jean-Yves Coppée, Yong-Sun Bahn & Guilhem Janbon. (2016) Intron retention-dependent gene regulation in Cryptococcus neoformans. Scientific Reports 6:1.
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Zohar Zafrir, Hadas Zur & Tamir Tuller. (2016) Selection for reduced translation costs at the intronic 5′ end in fungi. DNA Research 23:4, pages 377-394.
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Tomáš Pluskal, Kenichi Sajiki, Joanne Becker, Kojiro Takeda & Mitsuhiro Yanagida. (2016) Diverse fission yeast genes required for responding to oxidative and metal stress: Comparative analysis of glutathione-related and other defense gene deletions. Genes to Cells 21:6, pages 530-542.
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Nancy Martínez-Montiel, Laura Morales-Lara, Julio M. Hernández-Pérez & Rebeca D. Martínez-Contreras. (2016) In Silico Analysis of the Structural and Biochemical Features of the NMD Factor UPF1 in Ustilago maydis. PLOS ONE 11:2, pages e0148191.
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Skye A. Schmidt, Patricia L. Foley, Dong-Hoon Jeong, Linda A. Rymarquis, Francis Doyle, Scott A. Tenenbaum, Joel G. Belasco & Pamela J. Green. (2015) Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells. Nucleic Acids Research 43:1, pages 309-323.
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Takeshi Hayashi, Masahiro Ebe, Koji Nagao, Aya Kokubu, Kenichi Sajiki & Mitsuhiro Yanagida. (2014) Schizosaccharomyces pombe centromere protein Mis19 links Mis16 and Mis18 to recruit CENP-A through interacting with NMD factors and the SWI/SNF complex . Genes to Cells 19:7, pages 541-554.
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Meike J. Ochs, Elena Ossipova, Ganna Oliynyk, Dieter Steinhilber, Beatrix Suess & Per-Johan Jakobsson. (2013) Mass Spectrometry-Based Proteomics Identifies UPF1 as a Critical Gene Expression Regulator in MonoMac 6 Cells. Journal of Proteome Research 12:6, pages 2622-2629.
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