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Molecular and Cellular Biology Volume 27, 2007 - Issue 5
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Article

Requirement of Nhp6 Proteins for Transcription of a Subset of tRNA Genes and Heterochromatin Barrier Function in Saccharomyces cerevisiae

Priscilla Braglia1 Dipartimento di Biochimica e Biologia Molecolare, Università degli Studi di Parma, 43100Parma, Italy
,
Sandra L. Dugas2 Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana70803
,
David Donze2 Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana70803
&
Giorgio Dieci1 Dipartimento di Biochimica e Biologia Molecolare, Università degli Studi di Parma, 43100Parma, ItalyCorrespondence[email protected]
Pages 1545-1557 | Received 03 May 2006, Accepted 04 Dec 2006, Published online: 27 Mar 2023

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Giorgio Dieci, Beatrice Fermi & Maria Cristina Bosio. (2014) Investigating transcription reinitiation through in vitro approaches. Transcription 5:1.
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Aneeshkumar Gopalakrishnan Arimbasseri & Purnima Bhargava. (2008) Chromatin Structure and Expression of a Gene Transcribed by RNA Polymerase III Are Independent of H2A.Z Deposition. Molecular and Cellular Biology 28:8, pages 2598-2607.
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Vinesh Vinayachandran & Purnima Bhargava. (2022) Structural Features of the Nucleosomal DNA Modulate the Functional Binding of a Transcription Factor and Productive Transcription. Frontiers in Genetics 13.
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Richard A Kleinschmidt, Laurie M Lyon, Samantha L Smith, Jonah Rittenberry, K Maeve Lawless, Anabelle A Acosta & David Donze. (2021) Genetic screen for suppressors of increased silencing in rpd3 mutants in Saccharomyces cerevisiae identifies a potential role for H3K4 methylation . G3 Genes|Genomes|Genetics 11:11.
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Pratibha Bhalla, Dipti Vinayak Vernekar, Benoit Gilquin, Yohann Couté & Purnima Bhargava. (2019) Interactome of the yeast RNA polymerase III transcription machinery constitutes several chromatin modifiers and regulators of the genes transcribed by RNA polymerase II. Gene 702, pages 205-214.
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Allison L. Didychuk, Samuel E. Butcher & David A. Brow. (2018) The life of U6 small nuclear RNA, from cradle to grave. RNA 24:4, pages 437-460.
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Ashutosh Shukla & Purnima Bhargava. (2018) Regulation of tRNA gene transcription by the chromatin structure and nucleosome dynamics. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1861:4, pages 295-309.
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Vizoso-Vázquez Ángel, Barreiro-Alonso Aida, Rico-Díaz Agustín, Lamas-Maceiras Mónica, Rodríguez-Belmonte Esther, Becerra Manuel, González-Siso María Isabel & Cerdán María Esperanza. 2017. Old Yeasts - New Questions. Old Yeasts - New Questions.
Maria Cristina Bosio, Beatrice Fermi, Gloria Spagnoli, Elisabetta Levati, Ludmilla Rubbi, Roberto Ferrari, Matteo Pellegrini & Giorgio Dieci. (2017) Abf1 and other general regulatory factors control ribosome biogenesis gene expression in budding yeast. Nucleic Acids Research 45:8, pages 4493-4506.
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Diletta Durano, Andrea Lukacs, Francesca Di Felice, Gioacchino Micheli & Giorgio Camilloni. (2017) A novel role for Nhp6 proteins in histone gene regulation in Saccharomyces cerevisiae. The International Journal of Biochemistry & Cell Biology 83, pages 76-83.
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Beatrice Fermi, Maria Cristina Bosio & Giorgio Dieci. (2016) Promoter architecture and transcriptional regulation of Abf1-dependent ribosomal protein genes in Saccharomyces cerevisiae . Nucleic Acids Research 44:13, pages 6113-6126.
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Ngoc-Thuy-Trinh Nguyen, Cyril Saguez, Christine Conesa, Olivier Lefebvre & Joël Acker. (2015) Identification of proteins associated with RNA polymerase III using a modified tandem chromatin affinity purification. Gene 556:1, pages 51-60.
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Małgorzata Cieśla, Jolanta Mierzejewska, Małgorzata Adamczyk, Ann-Kristin Östlund Farrants & Magdalena Boguta. (2014) Fructose bisphosphate aldolase is involved in the control of RNA polymerase III-directed transcription. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1843:6, pages 1103-1110.
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Asawari Korde, Jessica M Rosselot & David Donze. (2014) Intergenic Transcriptional Interference Is Blocked by RNA Polymerase III Transcription Factor TFIIIB in Saccharomyces cerevisiae . Genetics 196:2, pages 427-438.
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Purnima Bhargava. (2013) Epigenetic regulation of transcription by RNA polymerase III. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:10, pages 1015-1025.
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Robyn D. Moir & Ian M. Willis. (2013) Regulation of pol III transcription by nutrient and stress signaling pathways. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 361-375.
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Joël Acker, Christine Conesa & Olivier Lefebvre. (2013) Yeast RNA polymerase III transcription factors and effectors. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 283-295.
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Chiara Pascali & Martin Teichmann. 2013. Epigenetics: Development and Disease. Epigenetics: Development and Disease 261 287 .
Andrea Orioli, Chiara Pascali, Aldo Pagano, Martin Teichmann & Giorgio Dieci. (2012) RNA polymerase III transcription control elements: Themes and variations. Gene 493:2, pages 185-194.
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Bryan J. Venters, Shinichiro Wachi, Travis N. Mavrich, Barbara E. Andersen, Peony Jena, Andrew J. Sinnamon, Priyanka Jain, Noah S. Rolleri, Cizhong Jiang, Christine Hemeryck-Walsh & B. Franklin Pugh. (2011) A Comprehensive Genomic Binding Map of Gene and Chromatin Regulatory Proteins in Saccharomyces. Molecular Cell 41:4, pages 480-492.
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Milena Preti, Cyril Ribeyre, Chiara Pascali, Maria Cristina Bosio, Barbara Cortelazzi, Jacques Rougemont, Enrico Guarnera, Felix Naef, David Shore & Giorgio Dieci. (2010) The Telomere-Binding Protein Tbf1 Demarcates snoRNA Gene Promoters in Saccharomyces cerevisiae. Molecular Cell 38:4, pages 614-620.
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Jing Zhou, Bo O. Zhou, Brian A. Lenzmeier & Jin-Qiu Zhou. (2009) Histone deacetylase Rpd3 antagonizes Sir2-dependent silent chromatin propagation. Nucleic Acids Research 37:11, pages 3699-3713.
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Giorgio Dieci, Roberta Ruotolo, Priscilla Braglia, Christophe Carles, Andrea Carpentieri, Angela Amoresano & Simone Ottonello. (2009) Positive modulation of RNA polymerase III transcription by ribosomal proteins. Biochemical and Biophysical Research Communications 379:2, pages 489-493.
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Tiffany A. Simms, Sandra L. Dugas, Jason C. Gremillion, Megan E. Ibos, M. Nicole Dandurand, Tasha T. Toliver, Daniel J. Edwards & David Donze. (2008) TFIIIC Binding Sites Function as both Heterochromatin Barriers and Chromatin Insulators in Saccharomyces cerevisiae . Eukaryotic Cell 7:12, pages 2078-2086.
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Yad Ghavi-Helm, Magali Michaut, Joël Acker, Jean-Christophe Aude, Pierre Thuriaux, Michel Werner & Julie Soutourina. (2008) Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription. Genes & Development 22:14, pages 1934-1947.
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Xiaowei Xue & Norbert Lehming. (2008) Nhp6p and Med3p Regulate Gene Expression by Controlling the Local Subunit Composition of RNA Polymerase II. Journal of Molecular Biology 379:2, pages 212-230.
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Karine Lemieux, Marc Larochelle & Luc Gaudreau. (2008) Variant histone H2A.Z, but not the HMG proteins Nhp6a/b, is essential for the recruitment of Swi/Snf, Mediator, and SAGA to the yeast GAL1 UASG. Biochemical and Biophysical Research Communications 369:4, pages 1103-1107.
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Kristin C. Scott, Caroline V. White & Huntington F. Willard. (2007) An RNA Polymerase III-Dependent Heterochromatin Barrier at Fission Yeast Centromere 1. PLoS ONE 2:10, pages e1099.
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. (2007) Current awareness on yeast. Yeast 24:10, pages 921-928.
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