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Molecular and Cellular Biology Volume 36, 2016 - Issue 1
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Article

Hepatic Long Intergenic Noncoding RNAs: High Promoter Conservation and Dynamic, Sex-Dependent Transcriptional Regulation by Growth Hormone

Tisha MeliaDivision of Cell and Molecular Biology, Department of Biology and Bioinformatics Program, Boston University, Boston, Massachusetts, USA
,
Pengying HaoDivision of Cell and Molecular Biology, Department of Biology and Bioinformatics Program, Boston University, Boston, Massachusetts, USA
,
Feyza YilmazDivision of Cell and Molecular Biology, Department of Biology and Bioinformatics Program, Boston University, Boston, Massachusetts, USA
&
David J. WaxmanDivision of Cell and Molecular Biology, Department of Biology and Bioinformatics Program, Boston University, Boston, Massachusetts, USACorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0001-7982-9206
ORCID Icon
Pages 50-69 | Received 09 Sep 2015, Accepted 02 Oct 2015, Published online: 18 Mar 2023

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Pengying Hao & David J. Waxman. (2021) STAT5 Regulation of Sex-Dependent Hepatic CpG Methylation at Distal Regulatory Elements Mapping to Sex-Biased Genes. Molecular and Cellular Biology 41:2.
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Dana Lau-Corona, Alexander Suvorov & David J. Waxman. (2017) Feminization of Male Mouse Liver by Persistent Growth Hormone Stimulation: Activation of Sex-Biased Transcriptional Networks and Dynamic Changes in Chromatin States. Molecular and Cellular Biology 37:19.
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Articles from other publishers (21)

Orna Issler, Yentl Y. van der ZeeAarthi Ramakrishnan, Sunhui Xia, Alexander K. Zinsmaier, Chunfeng Tan, Wei LiCaleb J. Browne, Deena M. Walker, Marine Salery, Angélica Torres-Berrío, Rita FutamuraJulia E. DuffyBenoit LabonteMatthew J. Girgenti, Carol A. TammingaJeffrey L. Dupree, Yan DongJames W. Murrough, Li Shen & Eric J. Nestler. (2022) The long noncoding RNA FEDORA is a cell type– and sex-specific regulator of depression. Science Advances 8:48.
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Akihide Kamiya & Kinuyo Ida. (2022) Liver Injury and Cell Survival in Non-Alcoholic Steatohepatitis Regulated by Sex-Based Difference through B Cell Lymphoma 6. Cells 11:23, pages 3751.
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Christine N Goldfarb, Kritika Karri, Maxim Pyatkov & David J Waxman. (2022) Interplay Between GH-regulated, Sex-biased Liver Transcriptome and Hepatic Zonation Revealed by Single-Nucleus RNA Sequencing. Endocrinology 163:7.
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Dana Lau-Corona, Hong Ma, Cameron Vergato, Andre Sarmento-Cabral, Mercedes del Rio-Moreno, Rhonda D Kineman & David J Waxman. (2022) Constitutively Active STAT5b Feminizes Mouse Liver Gene Expression. Endocrinology 163:5.
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Bryan J. Matthews, Tisha Melia & David J. Waxman. (2021) Harnessing natural variation to identify cis regulators of sex-biased gene expression in a multi-strain mouse liver model. PLOS Genetics 17:11, pages e1009588.
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Christine N. Goldfarb & David J. Waxman. (2021) Global analysis of expression, maturation and subcellular localization of mouse liver transcriptome identifies novel sex-biased and TCPOBOP-responsive long non-coding RNAs. BMC Genomics 22:1.
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Tisha Melia & David J. Waxman. (2020) Genetic factors contributing to extensive variability of sex-specific hepatic gene expression in Diversity Outbred mice. PLOS ONE 15:12, pages e0242665.
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Bryan J. Matthews & David J. Waxman. (2020) Impact of 3D genome organization, guided by cohesin and CTCF looping, on sex-biased chromatin interactions and gene expression in mouse liver. Epigenetics & Chromatin 13:1.
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Chad N. Brocker, Donghwan Kim, Tisha Melia, Kritika Karri, Thomas J. Velenosi, Shogo Takahashi, Daisuke Aibara, Jessica A. Bonzo, Moshe Levi, David J. Waxman & Frank J. Gonzalez. (2020) Long non-coding RNA Gm15441 attenuates hepatic inflammasome activation in response to PPARA agonism and fasting. Nature Communications 11:1.
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Dana Lau-Corona, Woo Kyun Bae, Lothar Hennighausen & David J. Waxman. (2020) Sex-biased genetic programs in liver metabolism and liver fibrosis are controlled by EZH1 and EZH2. PLOS Genetics 16:5, pages e1008796.
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Kritika Karri & David J Waxman. (2020) Widespread Dysregulation of Long Noncoding Genes Associated With Fatty Acid Metabolism, Cell Division, and Immune Response Gene Networks in Xenobiotic-exposed Rat Liver. Toxicological Sciences 174:2, pages 291-310.
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Dina M. IsmailOlfat G. ShakerMohamed A. KandeilRasha M. Hussein. (2019) Gene Expression of the Circulating Long Noncoding RNA H19 and HOTAIR in Egyptian Colorectal Cancer Patients . Genetic Testing and Molecular Biomarkers 23:9, pages 671-680.
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Tisha Melia & David J Waxman. (2019) Sex-Biased lncRNAs Inversely Correlate With Sex-Opposite Gene Coexpression Networks in Diversity Outbred Mouse Liver. Endocrinology 160:5, pages 989-1007.
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Joseph L. Dempsey & Julia Yue Cui. (2019) Regulation of Hepatic Long Noncoding RNAs by Pregnane X Receptor and Constitutive Androstane Receptor Agonists in Mouse Liver. Drug Metabolism and Disposition 47:3, pages 329-339.
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Benjamin D. Weger, Cédric Gobet, Jake Yeung, Eva Martin, Sonia Jimenez, Bertrand Betrisey, Francis Foata, Bernard Berger, Aurélie Balvay, Anne Foussier, Aline Charpagne, Brigitte Boizet-Bonhoure, Chieh Jason Chou, Felix Naef & Frédéric Gachon. (2019) The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism. Cell Metabolism 29:2, pages 362-382.e8.
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Nicholas J Lodato, Andy Rampersaud & David J Waxman. (2018) Impact of CAR Agonist Ligand TCPOBOP on Mouse Liver Chromatin Accessibility. Toxicological Sciences 164:1, pages 115-128.
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Bryan J Matthews & David J Waxman. (2018) Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver. eLife 7.
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Jo K. Perry, Zheng-Sheng Wu, Hichem C. Mertani, Tao Zhu & Peter E. Lobie. (2017) Tumour-Derived Human Growth Hormone As a Therapeutic Target in Oncology. Trends in Endocrinology & Metabolism 28:8, pages 587-596.
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Zelalem PetrosMing Ta Michael LeeAtsushi TakahashiYanfei ZhangGetnet YimerAbiy HabtewoldIna Schuppe-KoistinenTaisei MushirodaEyasu MakonnenMichiaki KuboEleni Aklillu. (2017) Genome-Wide Association and Replication Study of Hepatotoxicity Induced by Antiretrovirals Alone or with Concomitant Anti-Tuberculosis Drugs. OMICS: A Journal of Integrative Biology 21:4, pages 207-216.
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Ai-Ming Yu, Magnus Ingelman-Sundberg, Nathan J. Cherrington, Lauren M. Aleksunes, Ulrich M. Zanger, Wen Xie, Hyunyoung Jeong, Edward T. Morgan, Peter J. Turnbaugh, Curtis D. Klaassen, Aadra P. Bhatt, Matthew R. Redinbo, Pengying Hao, David J. Waxman, Li Wang & Xiao-bo Zhong. (2017) Regulation of drug metabolism and toxicity by multiple factors of genetics, epigenetics, lncRNAs, gut microbiota, and diseases: a meeting report of the 21st International Symposium on Microsomes and Drug Oxidations (MDO). Acta Pharmaceutica Sinica B 7:2, pages 241-248.
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Cheng-Wei Lai, Hsiao-Ling Chen, Tung-Chou Tsai, Te-Wei Chu, Shang-Hsun Yang, Kowit-Yu Chong & Chuan-Mu Chen. (2016) Sexually Dimorphic Expression of eGFP Transgene in the Akr1A1 Locus of Mouse Liver Regulated by Sex Hormone-Related Epigenetic Remodeling. Scientific Reports 6:1.
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