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Molecular and Cellular Biology Volume 34, 2014 - Issue 3
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Article

Mapping the Protein Interaction Network for TFIIB-Related Factor Brf1 in the RNA Polymerase III Preinitiation Complex

Seok-Kooi Khooa Molecular and Cell Biology, Taiwan International Graduate Program, Graduate Institute of Life Sciences, National Defense Medical Center, Taipei, Taiwan, Republic of China;b Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan, Republic of China
,
Chih-Chien Wub Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan, Republic of China
,
Yu-Chun Linb Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan, Republic of China
,
Jin-Cheng Leeb Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan, Republic of China
&
Hung-Ta Chena Molecular and Cell Biology, Taiwan International Graduate Program, Graduate Institute of Life Sciences, National Defense Medical Center, Taipei, Taiwan, Republic of China;b Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan, Republic of ChinaCorrespondence[email protected]
Pages 551-559 | Received 16 Jul 2013, Accepted 15 Nov 2013, Published online: 20 Mar 2023

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Yi-Yu Wei & Hung-Ta Chen. (2018) Functions of the TFIIE-Related Tandem Winged-Helix Domain of Rpc34 in RNA Polymerase III Initiation and Elongation. Molecular and Cellular Biology 38:4.
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Yan Han & Yuan He. (2016) Eukaryotic transcription initiation machinery visualized at molecular level. Transcription 7:5, pages 203-208.
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Hui-Lan Hu, Chih-Chien Wu, Jin-Cheng Lee & Hung-Ta Chen. (2015) A Region of Bdp1 Necessary for Transcription Initiation That Is Located within the RNA Polymerase III Active Site Cleft. Molecular and Cellular Biology 35:16, pages 2831-2840.
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Articles from other publishers (25)

Arvind Chandra Shekhar, Yuan-En Sun, Seok-Kooi Khoo, Yu-Chun Lin, Ester Betaria Malau, Wei-Hau Chang & Hung-Ta Chen. (2023) Site-directed biochemical analyses reveal that the switchable C-terminus of Rpc31 contributes to RNA polymerase III transcription initiation. Nucleic Acids Research 51:9, pages 4223-4236.
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Hailiang Zhao, Yao Qin, Ziyi Xiao, Kun Liang, Dianming Gong, Qin Sun & Fazhan Qiu. (2021) Knockdown NRPC2, 3, 8, NRPABC1 and NRPABC2 Affects RNAPIII Activity and Disrupts Seed Development in Arabidopsis. International Journal of Molecular Sciences 22:21, pages 11314.
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Luis E. Florencio-Martínez, Andrés Cano-Santiago, Fabiola Mondragón-Rosas, Maricarmen Gómez-García, Carlos Flores-Pérez, Fiordaliso C. Román-Carraro, Luis A. Barocio-Rodríguez, Rebeca G. Manning-Cela, Tomás Nepomuceno-Mejía & Santiago Martínez-Calvillo. (2021) Participation of TFIIIB Subunit Brf1 in Transcription Regulation in the Human Pathogen Leishmania major. Genes 12:2, pages 280.
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Naomi Yamada, Matthew J Rossi, Nina Farrell, B Franklin Pugh & Shaun Mahony. (2020) Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes. Nucleic Acids Research 48:20, pages 11215-11226.
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Rani Yeung & Duncan J Smith. (2020) Determinants of Replication-Fork Pausing at tRNA Genes in Saccharomyces cerevisiae . Genetics 214:4, pages 825-838.
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Can Fu, Xiaxia Liu, Xuezhi Li, Panfei Huo, Jingjing Ge, Yanfei Hou, Wenwen Yang, Jingxia Zhang, Limin Zhang, Dazhong Zhao, Changle Ma & Jian Liu. (2020) BRF Negatively Regulates Thermotolerance Defect of fes1a in Arabidopsis. Frontiers in Plant Science 11.
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Yong Wei, Diana Resetca, Zhe Li, Isak Johansson-Åkhe, Alexandra Ahlner, Sara Helander, Amelie Wallenhammar, Vivian Morad, Brian Raught, Björn Wallner, Tetsuro Kokubo, Yufeng Tong, Linda Z. Penn & Maria Sunnerhagen. (2019) Multiple direct interactions of TBP with the MYC oncoprotein. Nature Structural & Molecular Biology 26:11, pages 1035-1043.
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Fiordaliso C. Román-Carraro, Luis E. Florencio-Martínez, Gabriela Romero-Meza, Tomás Nepomuceno-Mejía, Julio C. Carrero, Rossana Arroyo, Jaime Ortega-López, Rebeca G. Manning-Cela & Santiago Martínez-Calvillo. (2019) TFIIIB Subunit Bdp1 Participates in RNA Polymerase III Transcription in the Protozoan Parasite Leishmania major . BioMed Research International 2019, pages 1-14.
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Saurabh Mishra & Richard J Maraia. (2019) RNA polymerase III subunits C37/53 modulate rU:dA hybrid 3′ end dynamics during transcription termination. Nucleic Acids Research 47:1, pages 310-327.
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Basil J. Greber & Eva Nogales. 2019. Macromolecular Protein Complexes II: Structure and Function. Macromolecular Protein Complexes II: Structure and Function 143 192 .
Yan Han, Chunli Yan, Susan Fishbain, Ivaylo Ivanov & Yuan He. (2018) Structural visualization of RNA polymerase III transcription machineries. Cell Discovery 4:1.
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Ian M. Willis & Robyn D. Moir. (2018) Signaling to and from the RNA Polymerase III Transcription and Processing Machinery. Annual Review of Biochemistry 87:1, pages 75-100.
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Christoph EngelSimon NeyerPatrick Cramer. (2018) Distinct Mechanisms of Transcription Initiation by RNA Polymerases I and II. Annual Review of Biophysics 47:1, pages 425-446.
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Ewan Phillip Ramsay & Alessandro Vannini. (2018) Structural rearrangements of the RNA polymerase III machinery during tRNA transcription initiation. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1861:4, pages 285-294.
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Seok-Kooi Khoo, Chih-Chien Wu, Yu-Chun Lin & Hung-Ta Chen. (2018) The TFIIE-related Rpc82 subunit of RNA polymerase III interacts with the TFIIB-related transcription factor Brf1 and the polymerase cleft for transcription initiation. Nucleic Acids Research 46:3, pages 1157-1166.
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Matthias K. Vorländer, Heena Khatter, Rene Wetzel, Wim J. H. Hagen & Christoph W. Müller. (2018) Molecular mechanism of promoter opening by RNA polymerase III. Nature 553:7688, pages 295-300.
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Qi Liu, Jing Wang, Yue Zhao, Chung-I Li, Kristy R. Stengel, Pankaj Acharya, Gretchen Johnston, Scott W. Hiebert & Yu Shyr. (2017) Identification of active miRNA promoters from nuclear run-on RNA sequencing. Nucleic Acids Research 45:13, pages e121-e121.
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Y.H. Jee, N. Sowada, T.C. Markello, I. Rezvani, G. Borck & J. Baron. (2017) BRF1 mutations in a family with growth failure, markedly delayed bone age, and central nervous system anomalies . Clinical Genetics 91:5, pages 739-747.
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Niklas A. Hoffmann, Arjen J. Jakobi, Matthias K. Vorländer, Carsten Sachse & Christoph W. Müller. (2016) Transcribing RNA polymerase III observed by electron cryomicroscopy . The FEBS Journal 283:15, pages 2811-2819.
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Jin Joo Kang, Yoon Soon Kang & William E. Stumph. (2016) TFIIIB subunit locations on U6 gene promoter DNA mapped by site‐specific protein–DNA photo‐cross‐linking. FEBS Letters 590:10, pages 1488-1497.
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Richard J. Maraia & Keshab Rijal. (2015) A transcriptional specialist resolved. Nature 528:7581, pages 204-205.
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Niklas A. Hoffmann, Arjen J. Jakobi, María Moreno-Morcillo, Sebastian Glatt, Jan Kosinski, Wim J. H. Hagen, Carsten Sachse & Christoph W. Müller. (2015) Molecular structures of unbound and transcribing RNA polymerase III. Nature 528:7581, pages 231-236.
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D. E. VÉLEZ-RAMÍREZ, L. E. FLORENCIO-MARTÍNEZ, G. ROMERO-MEZA, S. ROJAS-SÁNCHEZ, R. MORENO-CAMPOS, R. ARROYO, J. ORTEGA-LÓPEZ, R. MANNING-CELA & S. MARTÍNEZ-CALVILLO. (2015) BRF1, a subunit of RNA polymerase III transcription factor TFIIIB, is essential for cell growth of Trypanosoma brucei . Parasitology 142:13, pages 1563-1573.
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Guntram Borck, Friederike Hög, Maria Lisa Dentici, Perciliz L. Tan, Nadine Sowada, Ana Medeira, Lucie Gueneau, Holger Thiele, Maria Kousi, Francesca Lepri, Larissa Wenzeck, Ian Blumenthal, Antonio Radicioni, Tito Livio Schwarzenberg, Barbara Mandriani, Rita Fischetto, Deborah J. Morris-Rosendahl, Janine Altmüller, Alexandre Reymond, Peter Nürnberg, Giuseppe Merla, Bruno Dallapiccola, Nicholas Katsanis, Patrick Cramer & Christian Kubisch. (2015) BRF1 mutations alter RNA polymerase III–dependent transcription and cause neurodevelopmental anomalies . Genome Research 25:2, pages 155-166.
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Bruce A Knutson, Jie Luo, Jeffrey Ranish & Steven Hahn. (2014) Architecture of the Saccharomyces cerevisiae RNA polymerase I Core Factor complex. Nature Structural & Molecular Biology 21:9, pages 810-816.
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