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Molecular and Cellular Biology Volume 30, 2010 - Issue 8
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Article

Alternative Chromatin Structures of the 35S rRNA Genes in Saccharomyces cerevisiae Provide a Molecular Basis for the Selective Recruitment of RNA Polymerases I and II

Hannah GoetzeUniversitaet Regensburg, Institut für Biochemie, Genetik und Mikrobiologie, Lehrstuhl Biochemie III, 93053Regensburg, Germany
,
Manuel WittnerUniversitaet Regensburg, Institut für Biochemie, Genetik und Mikrobiologie, Lehrstuhl Biochemie III, 93053Regensburg, Germany
,
Stephan HamperlUniversitaet Regensburg, Institut für Biochemie, Genetik und Mikrobiologie, Lehrstuhl Biochemie III, 93053Regensburg, Germany
,
Maria HondeleUniversitaet Regensburg, Institut für Biochemie, Genetik und Mikrobiologie, Lehrstuhl Biochemie III, 93053Regensburg, Germany
,
Katharina MerzUniversitaet Regensburg, Institut für Biochemie, Genetik und Mikrobiologie, Lehrstuhl Biochemie III, 93053Regensburg, Germany
,
Ulrike StoecklUniversitaet Regensburg, Institut für Biochemie, Genetik und Mikrobiologie, Lehrstuhl Biochemie III, 93053Regensburg, Germany
&
Joachim GriesenbeckUniversitaet Regensburg, Institut für Biochemie, Genetik und Mikrobiologie, Lehrstuhl Biochemie III, 93053Regensburg, GermanyCorrespondence[email protected]
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Pages 2028-2045 | Received 20 Nov 2009, Accepted 02 Feb 2010, Published online: 20 Mar 2023

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Alarich Reiter, Robert Steinbauer, Anja Philippi, Jochen Gerber, Herbert Tschochner, Philipp Milkereit & Joachim Griesenbeck. (2011) Reduction in Ribosomal Protein Synthesis Is Sufficient To Explain Major Effects on Ribosome Production after Short-Term TOR Inactivation in Saccharomyces cerevisiae. Molecular and Cellular Biology 31:4, pages 803-817.
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Miguel A. Rocha, Bhavani S. Gowda & Jacob Fleischmann. (2022) RNAP II produces capped 18S and 25S ribosomal RNAs resistant to 5′-monophosphate dependent processive 5′ to 3′ exonuclease in polymerase switched Saccharomyces cerevisiae. BMC Molecular and Cell Biology 23:1.
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Florence Baudin, Brice Murciano, Herman K. H. Fung, Simon A. Fromm, Simone Mattei, Julia Mahamid & Christoph W. Müller. (2022) Mechanism of RNA polymerase I selection by transcription factor UAF. Science Advances 8:16.
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Georgi K. Marinov, Zohar Shipony, Anshul Kundaje & William J. Greenleaf. 2022. Chromatin. Chromatin 269 298 .
Arjuna Rao Vallabhaneni, Merita Kabashi, Matt Haymowicz, Kushal Bhatt, Violet Wayman, Shazia Ahmed & Heather Conrad-Webb. (2021) HSF1 induces RNA polymerase II synthesis of ribosomal RNA in S. cerevisiae during nitrogen deprivation. Current Genetics 67:6, pages 937-951.
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Emma Lesage, Jorge Perez-Fernandez, Sophie Queille, Christophe Dez, Olivier Gadal & Marta Kwapisz. (2021) Non-Coding, RNAPII-Dependent Transcription at the Promoters of rRNA Genes Regulates Their Chromatin State in S. cerevisiae. Non-Coding RNA 7:3, pages 41.
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Jonathan O. Nelson, George J. Watase, Natalie Warsinger-Pepe & Yukiko M. Yamashita. (2019) Mechanisms of rDNA Copy Number Maintenance. Trends in Genetics 35:10, pages 734-742.
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Katharina Hannig, Virginia Babl, Kristin Hergert, Andreas Maier, Michael Pilsl, Christopher Schächner, Ulrike Stöckl, Philipp Milkereit, Herbert Tschochner, Wolfgang Seufert & Joachim Griesenbeck. (2019) The C-terminal region of Net1 is an activator of RNA polymerase I transcription with conserved features from yeast to human. PLOS Genetics 15:2, pages e1008006.
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Tetsushi Iida & Takehiko Kobayashi. (2019) RNA Polymerase I Activators Count and Adjust Ribosomal RNA Gene Copy Number. Molecular Cell 73:4, pages 645-654.e13.
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Nicole A. Becker, Justin P. Peters & L. James MaherIIIIII. 2018. Bacterial Chromatin. Bacterial Chromatin 95 115 .
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Chelsea Herdman, Jean-Clement Mars, Victor Y. Stefanovsky, Michel G. Tremblay, Marianne Sabourin-Felix, Helen Lindsay, Mark D. Robinson & Tom Moss. (2017) A unique enhancer boundary complex on the mouse ribosomal RNA genes persists after loss of Rrn3 or UBF and the inactivation of RNA polymerase I transcription. PLOS Genetics 13:7, pages e1006899.
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Koji Kasahara, Ayako Higashino, Satoru Unzai, Hirofumi Yoshikawa & Tetsuro Kokubo. (2016) Oligomerization of Hmo1 mediated by box A is essential for DNA binding in vitro and in vivo . Genes to Cells 21:12, pages 1333-1352.
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Heng-hao Xu, Trent Su & Yong Xue. (2016) Histone H3 N-terminal acetylation sites especially K14 are important for rDNA silencing and aging. Scientific Reports 6:1.
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Gabriel E. Zentner, Sivakanthan Kasinathan, Beibei Xin, Remo Rohs & Steven Henikoff. (2015) ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications 6:1.
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Nicole A. Becker & L. James MaherIIIIII. (2015) High-resolution mapping of architectural DNA binding protein facilitation of a DNA repression loop in Escherichia coli . Proceedings of the National Academy of Sciences 112:23, pages 7177-7182.
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Virginia Babl, Ulrike Stöckl, Herbert Tschochner, Philipp Milkereit & Joachim Griesenbeck. 2015. DNA-Protein Interactions. DNA-Protein Interactions 219 232 .
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Michaela Conrad, Joep Schothorst, Harish Nag Kankipati, Griet Van Zeebroeck, Marta Rubio-Texeira & Johan M. Thevelein. (2014) Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae . FEMS Microbiology Reviews 38:2, pages 254-299.
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Yoselin Grimaldi, Paolo Ferrari & Michel Strubin. (2014) Independent RNA polymerase II preinitiation complex dynamics and nucleosome turnover at promoter sites in vivo. Genome Research 24:1, pages 117-124.
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Stephan Hamperl, Christopher R. Brown, Ana Villar Garea, Jorge Perez-Fernandez, Astrid Bruckmann, Katharina Huber, Manuel Wittner, Virginia Babl, Ulrike Stoeckl, Rainer Deutzmann, Hinrich Boeger, Herbert Tschochner, Philipp Milkereit & Joachim Griesenbeck. (2014) Compositional and structural analysis of selected chromosomal domains from Saccharomyces cerevisiae. Nucleic Acids Research 42:1, pages e2-e2.
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Stephan Hamperl, Manuel Wittner, Virginia Babl, Jorge Perez-Fernandez, Herbert Tschochner & Joachim Griesenbeck. (2013) Chromatin states at ribosomal DNA loci. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 405-417.
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Attila Németh, Jorge Perez-Fernandez, Philipp Merkl, Stephan Hamperl, Jochen Gerber, Joachim Griesenbeck & Herbert Tschochner. (2013) RNA polymerase I termination: Where is the end?. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 306-317.
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Bruce A. Knutson & Steven Hahn. (2013) TFIIB-related factors in RNA polymerase I transcription. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 265-273.
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Thomas Hierlmeier, Juliane Merl, Martina Sauert, Jorge Perez-Fernandez, Patrick Schultz, Astrid Bruckmann, Stephan Hamperl, Uli Ohmayer, Reinhard Rachel, Anja Jacob, Kristin Hergert, Rainer Deutzmann, Joachim Griesenbeck, Ed Hurt, Philipp Milkereit, Jochen Baßler & Herbert Tschochner. (2013) Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae. Nucleic Acids Research 41:2, pages 1191-1210.
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James R Broach. (2012) Nutritional Control of Growth and Development in Yeast. Genetics 192:1, pages 73-105.
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Alarich Reiter, Stephan Hamperl, Hannah Seitz, Philipp Merkl, Jorge Perez-Fernandez, Lydia Williams, Jochen Gerber, Attila Németh, Isabelle Léger, Olivier Gadal, Philipp Milkereit, Joachim Griesenbeck & Herbert Tschochner. (2012) The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast. The EMBO Journal 31:16, pages 3480-3493.
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Joachim Griesenbeck, Manuel Wittner, Romain Charton & Antonio Conconi. 2012. Transcriptional Regulation. Transcriptional Regulation 291 301 .
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Manuel Wittner, Stephan Hamperl, Ulrike Stöckl, Wolfgang Seufert, Herbert Tschochner, Philipp Milkereit & Joachim Griesenbeck. (2011) Establishment and Maintenance of Alternative Chromatin States at a Multicopy Gene Locus. Cell 145:4, pages 543-554.
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