Advanced search
Publication Cover
Molecular and Cellular Biology Volume 27, 2007 - Issue 2
Submit an article Journal homepage
44
Views
44
CrossRef citations to date
0
Altmetric
Article

The RNA Polymerase II Kinase Ctk1 Regulates Positioning of a 5′ Histone Methylation Boundary along Genes

Tiaojiang Xiao1 Department of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, North Carolina27599-7260
,
Yoichiro Shibata1 Department of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, North Carolina27599-7260
,
Bhargavi Rao2 Curriculum in Genetics and Molecular Biology
,
R. Nicholas Laribee1 Department of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, North Carolina27599-7260
,
Rose O'Rourke3 Department of Biology and Carolina Center for the Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina27599-7260
,
Michael J. Buck3 Department of Biology and Carolina Center for the Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina27599-7260
,
Jack F. Greenblatt4 Department of Medical Genetics, University of Toronto, Toronto, Ontario, CanadaM5G 1L6
,
Nevan J. Krogan5 Department of Cellular and Molecular Pharmacology, University of California—San Francisco, San Francisco, California94143
,
Jason D. Lieb2 Curriculum in Genetics and Molecular Biology;3 Department of Biology and Carolina Center for the Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina27599-7260
&
Brian D. Strahl1 Department of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, North Carolina27599-7260;2 Curriculum in Genetics and Molecular BiologyCorrespondence[email protected]
 show all
Pages 721-731 | Received 31 Aug 2006, Accepted 24 Oct 2006, Published online: 27 Mar 2023

Citations (44)

Keep up to date with the latest research on this topic with citation updates for this article.

Subscribe to citation updates

Read on this site (5)

Samuel Keating & Assam El-Osta. (2013) Transcriptional regulation by the Set7 lysine methyltransferase. Epigenetics 8:4, pages 361-372.
Read now
Ying Liu, Linda Warfield, Chao Zhang, Jie Luo, Jasmina Allen, Walter H. Lang, Jeffrey Ranish, Kevan M. Shokat & Steven Hahn. (2009) Phosphorylation of the Transcription Elongation Factor Spt5 by Yeast Bur1 Kinase Stimulates Recruitment of the PAF Complex. Molecular and Cellular Biology 29:17, pages 4852-4863.
Read now
Michael L. Youdell, Kelby O. Kizer, Elena Kisseleva-Romanova, Stephen M. Fuchs, Eris Duro, Brian D. Strahl & Jane Mellor. (2008) Roles for Ctk1 and Spt6 in Regulating the Different Methylation States of Histone H3 Lysine 36. Molecular and Cellular Biology 28:16, pages 4915-4926.
Read now
Ruth Yokoyama, Antonio Pannuti, Huiping Ling, Edwin R. Smith & John C. Lucchesi. (2007) A Plasmid Model System Shows that Drosophila Dosage Compensation Depends on the Global Acetylation of Histone H4 at Lysine 16 and Is Not Affected by Depletion of Common Transcription Elongation Chromatin Marks. Molecular and Cellular Biology 27:22, pages 7865-7870.
Read now
Adam Wood, Abhijit Shukla, Jessica Schneider, Jung Shin Lee, Julie D. Stanton, Tiffany Dzuiba, Selene K. Swanson, Laurence Florens, Michael P. Washburn, John Wyrick, Sukesh R. Bhaumik & Ali Shilatifard. (2007) Ctk Complex-Mediated Regulation of Histone Methylation by COMPASS. Molecular and Cellular Biology 27:2, pages 709-720.
Read now

Articles from other publishers (39)

Neha Deshpande & Mary Bryk. (2023) Diverse and dynamic forms of gene regulation by the S. cerevisiae histone methyltransferase Set1. Current Genetics 69:2-3, pages 91-114.
Crossref
Yanjun Zhang, Yuan Fang, Yin Tang, Shixun Han, Junqi Jia, Xinyi Wan, Jiaqi Chen, Ying Yuan, Bin Zhao & Dong Fang. (2022) SMYD5 catalyzes histone H3 lysine 36 trimethylation at promoters. Nature Communications 13:1.
Crossref
Bo Bae Lee, Hyeonju Woo, Min Kyung Lee, SeoJung Youn, Sumin Lee, Jae-Seok Roe, Soo Young Lee & TaeSoo Kim. (2021) Core promoter activity contributes to chromatin-based regulation of internal cryptic promoters. Nucleic Acids Research 49:14, pages 8097-8109.
Crossref
Yuan Fang, Yin Tang, Yanjun Zhang, Yixin Pan, Junqi Jia, Zhongxing Sun, Weiwu Zeng, Jiaqi Chen, Ying Yuan & Dong Fang. (2021) The H3K36me2 methyltransferase NSD1 modulates H3K27ac at active enhancers to safeguard gene expression. Nucleic Acids Research 49:11, pages 6281-6295.
Crossref
You Zhou, Xiao Zheng, Bin Xu, Haifeng Deng, Lujun Chen & Jingting Jiang. (2020) Histone methyltransferase SETD2 inhibits tumor growth via suppressing CXCL1-mediated activation of cell cycle in lung adenocarcinoma. Aging 12:24, pages 25189-25206.
Crossref
Zhongxing Sun, Yanjun Zhang, Junqi Jia, Yuan Fang, Yin Tang, Hongfei Wu & Dong Fang. (2020) H3K36me3, message from chromatin to DNA damage repair. Cell & Bioscience 10:1.
Crossref
Li Cheng, Cheng-xi Liu, Shuangying Jiang, Sha Hou, Jin-guo Huang, Zi-qing Chen, Yang-yang Sun, Huan Qi, He-wei Jiang, Jing-fang Wang, Yi-ming Zhou, Daniel M. Czajkowsky, Junbiao Dai & Sheng-ce Tao. (2018) Cell Lysate Microarray for Mapping the Network of Genetic Regulators for Histone Marks. Molecular & Cellular Proteomics 17:9, pages 1720-1736.
Crossref
Agnieszka Bochyńska, Juliane Lüscher-Firzlaff & Bernhard Lüscher. (2018) Modes of Interaction of KMT2 Histone H3 Lysine 4 Methyltransferase/COMPASS Complexes with Chromatin. Cells 7:3, pages 17.
Crossref
Gustavo Turecki. 2018. Phenomenology of Suicide. Phenomenology of Suicide 39 49 .
Christopher C. Ebmeier, Benjamin Erickson, Benjamin L. Allen, Mary A. Allen, Hyunmin Kim, Nova Fong, Jeremy R. Jacobsen, Kaiwei Liang, Ali Shilatifard, Robin D. Dowell, William M. Old, David L. Bentley & Dylan J. Taatjes. (2017) Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications. Cell Reports 20:5, pages 1173-1186.
Crossref
Yaelim Lee, Daechan Park & Vishwanath R. Iyer. (2017) The ATP-dependent chromatin remodeler Chd1 is recruited by transcription elongation factors and maintains H3K4me3/H3K36me3 domains at actively transcribed and spliced genes. Nucleic Acids Research 45:12, pages 7180-7190.
Crossref
Nova Fong, Tassa Saldi, Ryan M. Sheridan, Michael A. Cortazar & David L. Bentley. (2017) RNA Pol II Dynamics Modulate Co-transcriptional Chromatin Modification, CTD Phosphorylation, and Transcriptional Direction. Molecular Cell 66:4, pages 546-557.e3.
Crossref
T. N. Kozhina, T. A. Evstiukhina, V. T. Peshekhonov, A. Yu. Chernenkov & V. G. Korolev. (2016) Dot1 and Set2 histone methylases control the spontaneous and UV-induced mutagenesis levels in the Saccharomyces cerevisiae yeasts. Russian Journal of Genetics 52:3, pages 263-272.
Crossref
Jean Mbogning, Viviane Pagé, Jillian Burston, Emily Schwenger, Robert P. Fisher, Beate Schwer, Stewart Shuman & Jason C. Tanny. (2015) Functional interaction of Rpb1 and Spt5 C-terminal domains in co-transcriptional histone modification. Nucleic Acids Research, pages gkv837.
Crossref
Philippe Materne, Jayamani Anandhakumar, Valerie Migeot, Ignacio Soriano, Carlo Yague-Sanz, Elena Hidalgo, Carole Mignion, Luis Quintales, Francisco Antequera & Damien Hermand. (2015) Promoter nucleosome dynamics regulated by signalling through the CTD code. eLife 4.
Crossref
Qi Fu, Robert A. McKnight, Christopher W. Callaway, Xing Yu, Robert H. Lane & Amber V. Majnik. (2014) Intrauterine growth restriction disrupts developmental epigenetics around distal growth hormone response elements on the rat hepatic IGF‐1 gene. The FASEB Journal 29:4, pages 1176-1184.
Crossref
Benoit Labonté & Gustavo Turecki. 2014. A Concise Guide to Understanding Suicide. A Concise Guide to Understanding Suicide 288 306 .
. 2014. A Concise Guide to Understanding Suicide. A Concise Guide to Understanding Suicide 277 356 .
Geetha Durairaj, Rwik Sen, Bhawana Uprety, Abhijit Shukla & Sukesh R. Bhaumik. (2014) Sus1p Facilitates Pre-Initiation Complex Formation at the SAGA-Regulated Genes Independently of Histone H2B De-Ubiquitylation. Journal of Molecular Biology 426:16, pages 2928-2941.
Crossref
Benoit Labonté & Gustavo Turecki. 2013. Epigenetics and Complex Traits. Epigenetics and Complex Traits 179 207 .
Ali Shilatifard. (2012) The COMPASS Family of Histone H3K4 Methylases: Mechanisms of Regulation in Development and Disease Pathogenesis. Annual Review of Biochemistry 81:1, pages 65-95.
Crossref
Andrea J. Gossett & Jason D. Lieb. (2012) In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae. PLoS Genetics 8:6, pages e1002771.
Crossref
Luis M. Soares & Stephen Buratowski. (2012) Yeast Swd2 Is Essential Because of Antagonism between Set1 Histone Methyltransferase Complex and APT (Associated with Pta1) Termination Factor. Journal of Biological Chemistry 287:19, pages 15219-15231.
Crossref
Yumiko Yoshinaga, Kazuki Mochizuki & Toshinao Goda. (2012) Trimethylation of histone H3K4 is associated with the induction of fructose-inducible genes in rat jejunum. Biochemical and Biophysical Research Communications 419:4, pages 605-611.
Crossref
Oliver J Rando & Fred Winston. (2012) Chromatin and Transcription in Yeast. Genetics 190:2, pages 351-387.
Crossref
Dae-Whan Kwon & Seong Hoon Ahn. (2011) Role of yeast JmjC-domain containing histone demethylases in actively transcribed regions. Biochemical and Biophysical Research Communications 410:3, pages 614-619.
Crossref
Susannah L. McKay & Tracy L. Johnson. (2011) An Investigation of a Role for U2 snRNP Spliceosomal Components in Regulating Transcription. PLoS ONE 6:1, pages e16077.
Crossref
Adam Chruscicki, Vicki E MacDonald, Barry P Young, Christopher J R Loewen & LeAnn J Howe. (2010) Critical Determinants for Chromatin Binding by Saccharomyces cerevisiae Yng1 Exist Outside of the Plant Homeodomain Finger . Genetics 185:2, pages 469-477.
Crossref
Lili Wang, Robert Wuerffel, Scott Feldman, Ahmed Amine Khamlichi & Amy L. Kenter. (2009) S region sequence, RNA polymerase II, and histone modifications create chromatin accessibility during class switch recombination. Journal of Experimental Medicine 206:8, pages 1817-1830.
Crossref
Kelly D. Sullivan, Thomas E. Mullen, William F. Marzluff & Eric J. Wagner. (2009) Knockdown of SLBP results in nuclear retention of histone mRNA. RNA 15:3, pages 459-472.
Crossref
Hongfang Qiu, Cuihua Hu & Alan G. Hinnebusch. (2009) Phosphorylation of the Pol II CTD by KIN28 Enhances BUR1/BUR2 Recruitment and Ser2 CTD Phosphorylation Near Promoters. Molecular Cell 33:6, pages 752-762.
Crossref
Shima Nakanishi, Brian W Sanderson, Kym M Delventhal, William D Bradford, Karen Staehling-Hampton & Ali Shilatifard. (2008) A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation. Nature Structural & Molecular Biology 15:8, pages 881-888.
Crossref
Jason D. Merker, Margaret Dominska, Patricia W. Greenwell, Erica Rinella, David C. Bouck, Yoichiro Shibata, Brian D. Strahl, Piotr Mieczkowski & Thomas D. Petes. (2008) The histone methylase Set2p and the histone deacetylase Rpd3p repress meiotic recombination at the HIS4 meiotic recombination hotspot in Saccharomyces cerevisiae. DNA Repair 7:8, pages 1298-1308.
Crossref
J. Armando Casas-Mollano, Byeong-ryool Jeong, Jianping Xu, Hideaki Moriyama & Heriberto Cerutti. (2008) The MUT9p kinase phosphorylates histone H3 threonine 3 and is necessary for heritable epigenetic silencing in Chlamydomonas . Proceedings of the National Academy of Sciences 105:17, pages 6486-6491.
Crossref
Tanja Danker, Björn Dreesen, Sascha Offermann, Ina Horst & Christoph Peterhänsel. (2007) Developmental information but not promoter activity controls the methylation state of histone H3 lysine 4 on two photosynthetic genes in maize. The Plant Journal 53:3, pages 465-474.
Crossref
Khairul I. Ansari, Bibhu P. Mishra & Subhrangsu S. Mandal. (2008) Human CpG binding protein interacts with MLL1, MLL2 and hSet1 and regulates Hox gene expression. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1779:1, pages 66-73.
Crossref
Shelley L. Berger. (2007) The complex language of chromatin regulation during transcription. Nature 447:7143, pages 407-412.
Crossref
Sunnie M. Yoh, Helen Cho, Loni Pickle, Ronald M. Evans & Katherine A. Jones. (2007) The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export. Genes & Development 21:2, pages 160-174.
Crossref
Christopher Ebmeier, Benjamin Erickson, Benjamin Allen, Mary Allen, Hyunmin Kim, Nova Fong, Jeremy Jacobsen, Kaiwei Liang, Ali Shilatifard, Robin Dowell, William Old, David Bentley & Dylan J. Taatjes. (2018) Human TFIIH Kinase CDK7 Regulates Transcription-Associated Epigenetic Modifications. SSRN Electronic Journal.
Crossref

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.