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Molecular and Cellular Biology Volume 15, 1995 - Issue 4
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Research Article

A Saccharomyces cerevisiae Mitochondrial Transcription Factor, sc-mtTFB, Shares Features with Sigma Factors but Is Functionally Distinct

Gerald S. ShadelDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, California94305-5427
&
David A. ClaytonDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, California94305-5427
Pages 2101-2108 | Received 04 Nov 1994, Accepted 24 Jan 1995, Published online: 30 Mar 2023

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Vicki McCulloch & Gerald S. Shadel. (2003) Human Mitochondrial Transcription Factor B1 Interacts with the C-Terminal Activation Region of h-mtTFA and Stimulates Transcription Independently of Its RNA Methyltransferase Activity. Molecular and Cellular Biology 23:16, pages 5816-5824.
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Vicki McCulloch, Bonnie L. Seidel-Rogol & Gerald S. Shadel. (2002) A Human Mitochondrial Transcription Factor Is Related to RNA Adenine Methyltransferases and Binds S-Adenosylmethionine. Molecular and Cellular Biology 22:4, pages 1116-1125.
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Paul F. Cliften, Sei-Heon Jang & Judith A. Jaehning. (2000) Identifying a Core RNA Polymerase Surface Critical for Interactions with a Sigma-Like Specificity Factor. Molecular and Cellular Biology 20:18, pages 7013-7023.
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Tatsuya M. Ikeda & Michael W. Gray. (1999) Characterization of a DNA-Binding Protein Implicated in Transcription in Wheat Mitochondria. Molecular and Cellular Biology 19:12, pages 8113-8122.
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Igor Antoshechkin & Daniel F. Bogenhagen. (1995) Distinct Roles for Two Purified Factors in Transcription of Xenopus Mitochondrial DNA. Molecular and Cellular Biology 15:12, pages 7032-7042.
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Ouardia Ait-Mohamed, Anna M. G. Novák Vanclová, Nathalie Joli, Yue Liang, Xue Zhao, Auguste Genovesio, Leila Tirichine, Chris Bowler & Richard G. Dorrell. (2020) PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum. Frontiers in Plant Science 11.
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Hauke S. Hillen, Dmitry Temiakov & Patrick Cramer. (2018) Structural basis of mitochondrial transcription. Nature Structural & Molecular Biology 25:9, pages 754-765.
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AJ Harris & Aaron David Goldman. (2018) Phylogenetic Reconstruction Shows Independent Evolutionary Origins of Mitochondrial Transcription Factors from an Ancient Family of RNA Methyltransferase Proteins. Journal of Molecular Evolution 86:5, pages 277-282.
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Alexandra-Viola Bohne, Marlene Teubner, Karsten Liere, Andreas Weihe & Thomas Börner. (2016) In vitro promoter recognition by the catalytic subunit of plant phage-type RNA polymerases. Plant Molecular Biology 92:3, pages 357-369.
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Srdja Drakulic, Liping Wang, Jorge Cuéllar, Qing Guo, Gilberto Velázquez, Jaime Martín-Benito, Rui Sousa & José M. Valpuesta. (2014) Yeast mitochondrial RNAP conformational changes are regulated by interactions with the mitochondrial transcription factor. Nucleic Acids Research 42:17, pages 11246-11260.
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Aishwarya P. Deshpande & Smita S. Patel. (2012) Mechanism of transcription initiation by the yeast mitochondrial RNA polymerase. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1819:9-10, pages 930-938.
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Guo-Qing Tang, Aishwarya P. Deshpande & Smita S. Patel. (2011) Transcription Factor-dependent DNA Bending Governs Promoter Recognition by the Mitochondrial RNA Polymerase. Journal of Biological Chemistry 286:44, pages 38805-38813.
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Maria Savkina, Dmitry Temiakov, William T. McAllister & Michael Anikin. (2010) Multiple Functions of Yeast Mitochondrial Transcription Factor Mtf1p during Initiation. Journal of Biological Chemistry 285:6, pages 3957-3964.
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Swaroopa Paratkar & Smita S. Patel. (2010) Mitochondrial Transcription Factor Mtf1 Traps the Unwound Non-template Strand to Facilitate Open Complex Formation. Journal of Biological Chemistry 285:6, pages 3949-3956.
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Guo-Qing Tang, Swaroopa Paratkar & Smita S. Patel. (2009) Fluorescence Mapping of the Open Complex of Yeast Mitochondrial RNA Polymerase. Journal of Biological Chemistry 284:9, pages 5514-5522.
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Ae Kyung Park, Ho Kim & Hyung Jong Jin. (2009) Comprehensive phylogenetic analysis of evolutionarily conserved rRNA adenine dimethyltransferase suggests diverse bacterial contributions to the nucleus-encoded plastid proteome. Molecular Phylogenetics and Evolution 50:2, pages 282-289.
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Cristina Adán, Yuichi Matsushima, Rosana Hernández-Sierra, Raquel Marco-Ferreres, Miguel Ángel Fernández-Moreno, Emiliano González-Vioque, Manuel Calleja, Juan J. Aragón, Laurie S. Kaguni & Rafael Garesse. (2008) Mitochondrial Transcription Factor B2 Is Essential for Metabolic Function in Drosophila melanogaster Development. Journal of Biological Chemistry 283:18, pages 12333-12342.
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Richard C. Scarpulla. (2008) Transcriptional Paradigms in Mammalian Mitochondrial Biogenesis and Function. Physiological Reviews 88:2, pages 611-638.
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Justin Cotney & Gerald S. Shadel. (2006) Evidence for an Early Gene Duplication Event in the Evolution of the Mitochondrial Transcription Factor B Family and Maintenance of rRNA Methyltransferase Activity in Human mtTFB1 and mtTFB2. Journal of Molecular Evolution 63:5, pages 707-717.
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Huan Ling Liang & Margaret T.T. Wong-Riley. (2006) Activity-dependent regulation of nuclear respiratory factor-1, nuclear respiratory factor-2, and peroxisome proliferator-activated receptor gamma coactivator-1 in neurons. NeuroReport 17:4, pages 401-405.
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Agata T. Rogowska, Olga Puchta, Anna M. Czarnecka, Aneta Kaniak, Piotr P. Stepien & Pawel Golik. (2006) Balance between Transcription and RNA Degradation Is Vital for Saccharomyces cerevisiae Mitochondria: Reduced Transcription Rescues the Phenotype of Deficient RNA Degradation . Molecular Biology of the Cell 17:3, pages 1184-1193.
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Richard C. Scarpulla. 2005. Oxidative Phosphorylation in Health and Disease. Oxidative Phosphorylation in Health and Disease 28 42 .
Martina Gaspari, Maria Falkenberg, Nils-Göran Larsson & Claes M Gustafsson. (2004) The mitochondrial RNA polymerase contributes critically to promoter specificity in mammalian cells. The EMBO Journal 23:23, pages 4606-4614.
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Michio Matsunaga & Judith A. Jaehning. (2004) Intrinsic Promoter Recognition by a “Core” RNA Polymerase. Journal of Biological Chemistry 279:43, pages 44239-44242.
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Gerald S. Shadel. (2004) Coupling the mitochondrial transcription machinery to human disease. Trends in Genetics 20:10, pages 513-519.
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Michio Matsunaga & Judith A. Jaehning. (2004) A Mutation in the Yeast Mitochondrial Core RNA Polymerase, Rpo41, Confers Defects in Both Specificity Factor Interaction and Promoter Utilization. Journal of Biological Chemistry 279:3, pages 2012-2019.
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Richard H. Carter, Alexander A. Demidenko, Susan Hattingh-Willis & Lucia B. Rothman-Denes. (2003) Phage N4 RNA polymerase II recruitment to DNA by a single-stranded DNA-binding protein. Genes & Development 17:18, pages 2334-2345.
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Mark A. Karlok, Sei-Heon Jang & Judith A. Jaehning. (2002) Mutations in the Yeast Mitochondrial RNA Polymerase Specificity Factor, Mtf1, Verify an Essential Role in Promoter Utilization. Journal of Biological Chemistry 277:31, pages 28143-28149.
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Thomas LisowskyDetlef WilkensTorsten Stein, Boris Hedtke, Thomas Börner & Andreas Weihe. (2002) The C-terminal Region of Mitochondrial Single-subunit RNA Polymerases Contains Species-specific Determinants for Maintenance of Intact Mitochondrial Genomes. Molecular Biology of the Cell 13:7, pages 2245-2255.
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Eric A. Shoubridge. (2002) The ABcs of mitochondrial transcription. Nature Genetics 31:3, pages 227-228.
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Florian D. Schubot, Chun-Jung Chen, John P. Rose, Tamara A. Dailey, Harry A. Dailey & Bi-Cheng Wang. (2001) Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription. Protein Science 10:10, pages 1980-1988.
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Sang-Chul Nam & Changwon Kang. (2001) Expression of Cloned cDNA for the Human Mitochondrial RNA Polymerase in Escherichia coli and Purification. Protein Expression and Purification 21:3, pages 485-491.
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MatthewS. Rodeheffer, BradenE. Boone, AnthonyC. Bryan & GeraldS. Shadel. (2001) Nam1p, a Protein Involved in RNA Processing and Translation, Is Coupled to Transcription through an Interaction with Yeast Mitochondrial RNA Polymerase. Journal of Biological Chemistry 276:11, pages 8616-8622.
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Bonnie L. Seidel-Rogol & Gerald S. Shadel. 2001. Mitochondria. Mitochondria 413 427 .
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Gerald S. Shadel, Gail A. Buckenmeyer, David A. Clayton & Mark E. Schmitt. (2000) Mutational analysis of the RNA component of Saccharomyces cerevisiae RNase MRP reveals distinct nuclear phenotypes. Gene 245:1, pages 175-184.
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Yuanhong Wang & Gerald S. Shadel. (1999) Stability of the mitochondrial genome requires an amino-terminal domain of yeast mitochondrial RNA polymerase. Proceedings of the National Academy of Sciences 96:14, pages 8046-8051.
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Paul F. Cliften, Jae-Young Park, Brian P. Davis, Sei-Heon Jang & Judith A. Jaehning. (1997) Identification of three regions essential for interaction between a ς-like factor and core RNA polymerase. Genes & Development 11:21, pages 2897-2909.
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Gerald S. Shadel & David A. Clayton. (1997) MITOCHONDRIAL DNA MAINTENANCE IN VERTEBRATES. Annual Review of Biochemistry 66:1, pages 409-435.
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Daniel F. Bogenhagen. (1996) Interaction of mtTFB and mtRNA Polymerase at Core Promoters for Transcription of Xenopus laevis mtDNA. Journal of Biological Chemistry 271:20, pages 12036-12041.
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