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Research Article

Dynamic Protein-DNA Architecture of a Yeast Heat Shock Promoter

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Pages 2737-2744 | Received 17 Nov 1994, Accepted 09 Feb 1995, Published online: 30 Mar 2023

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Surabhi Chowdhary, Amoldeep S. Kainth & David S. Gross. (2017) Heat Shock Protein Genes Undergo Dynamic Alteration in Their Three-Dimensional Structure and Genome Organization in Response to Thermal Stress. Molecular and Cellular Biology 37:24.
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Jayamani Anandhakumar, Yara W. Moustafa, Surabhi Chowdhary, Amoldeep S. Kainth & David S. Gross. (2016) Evidence for Multiple Mediator Complexes in Yeast Independently Recruited by Activated Heat Shock Factor. Molecular and Cellular Biology 36:14, pages 1943-1960.
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Tamara Y. Erkina, Paul A. Tschetter & Alexandre M. Erkine. (2008) Different Requirements of the SWI/SNF Complex for Robust Nucleosome Displacement at Promoters of Heat Shock Factor and Msn2- and Msn4-Regulated Heat Shock Genes. Molecular and Cellular Biology 28:4, pages 1207-1217.
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Yunyuan Vivian Wang, Hongbing Tang & David S. Gilmour. (2005) Identification In Vivo of Different Rate-Limiting Steps Associated with Transcriptional Activators in the Presence and Absence of a GAGA Element. Molecular and Cellular Biology 25:9, pages 3543-3552.
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Ji-Sook Hahn, Zhanzhi Hu, Dennis J. Thiele & Vishwanath R. Iyer. (2004) Genome-Wide Analysis of the Biology of Stress Responses through Heat Shock Transcription Factor. Molecular and Cellular Biology 24:12, pages 5249-5256.
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G. Costanzo, S. Camier, P. Carlucci, L. Burderi & R. Negri. (2001) RNA Polymerase III Transcription Complexes on Chromosomal 5S rRNA Genes In Vivo: TFIIIB Occupancy and Promoter Opening. Molecular and Cellular Biology 21:9, pages 3166-3178.
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Christina Bourgeois Venturi, Alexander M. Erkine & David S. Gross. (2000) Cell Cycle-Dependent Binding of Yeast Heat Shock Factor to Nucleosomes. Molecular and Cellular Biology 20:17, pages 6435-6448.
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Hongbing Tang, Yingyun Liu, Lakshmi Madabusi & David S. Gilmour. (2000) Promoter-Proximal Pausing on the hsp70Promoter in Drosophila melanogaster Depends on the Upstream Regulator. Molecular and Cellular Biology 20:7, pages 2569-2580.
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Ernesto Guzmán & John T. Lis. (1999) Transcription Factor TFIIH Is Required for Promoter Melting In Vivo. Molecular and Cellular Biology 19:8, pages 5652-5658.
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Janine T. Lin & John T. Lis. (1999) Glycogen Synthase Phosphatase Interacts with Heat Shock Factor To Activate CUP1 Gene Transcription in Saccharomyces cerevisiae. Molecular and Cellular Biology 19:5, pages 3237-3245.
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Alexander M. Erkine, Serena F. Magrogan, Edward A. Sekinger & David S. Gross. (1999) Cooperative Binding of Heat Shock Factor to the Yeast HSP82 Promoter In Vivo and In Vitro. Molecular and Cellular Biology 19:3, pages 1627-1639.
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Nicholas Santoro, Nina Johansson & Dennis J. Thiele. (1998) Heat Shock Element Architecture Is an Important Determinant in the Temperature and Transactivation Domain Requirements for Heat Shock Transcription Factor. Molecular and Cellular Biology 18:11, pages 6340-6352.
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András Orosz, Jan Wisniewski & Carl Wu. (1996) Regulation of Drosophila Heat Shock Factor Trimerization: Global Sequence Requirements and Independence of Nuclear Localization. Molecular and Cellular Biology 16:12, pages 7018-7030.
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Alexander M. Erkine, Christopher C. Adams, Tuba Diken & David S. Gross. (1996) Heat Shock Factor Gains Access to the Yeast HSC82 Promoter Independently of Other Sequence-Specific Factors and Antagonizes Nucleosomal Repression of Basal and Induced Transcription. Molecular and Cellular Biology 16:12, pages 7004-7017.
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Gregory A. Michelotti, Emil F. Michelotti, Andrea Pullner, Robert C. Duncan, Dirk Eick & David Levens. (1996) Multiple Single-Stranded cis Elements Are Associated with Activated Chromatin of the Human c-myc Gene In Vivo. Molecular and Cellular Biology 16:6, pages 2656-2669.
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Elizabeth M. Newton, Ursula Knauf, Marie Green & Robert E. Kingston. (1996) The Regulatory Domain of Human Heat Shock Factor 1 Is Sufficient To Sense Heat Stress. Molecular and Cellular Biology 16:3, pages 839-846.
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Articles from other publishers (71)

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David Pincus, Jayamani Anandhakumar, Prathapan Thiru, Michael J. Guertin, Alexander M. Erkine & David S. Gross. (2018) Genetic and epigenetic determinants establish a continuum of Hsf1 occupancy and activity across the yeast genome. Molecular Biology of the Cell 29:26, pages 3168-3182.
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Kouichi Kuroda & Mitsuyoshi Ueda. 2018. Origin and Evolution of Biodiversity. Origin and Evolution of Biodiversity 23 36 .
Kouichi Kuroda & Mitsuyoshi Ueda. (2017) Engineering of global regulators and cell surface properties toward enhancing stress tolerance in Saccharomyces cerevisiae. Journal of Bioscience and Bioengineering 124:6, pages 599-605.
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Adam ScheideggerSergei Nechaev. (2016) RNA polymerase II pausing as a context-dependent reader of the genome. Biochemistry and Cell Biology 94:1, pages 82-92.
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Ryosuke Takii & Mitsuaki Fujimoto. 2016. Heat Shock Factor. Heat Shock Factor 31 50 .
Furqan M. Fazal, Cong A. Meng, Kenji Murakami, Roger D. Kornberg & Steven M. Block. (2015) Real-time observation of the initiation of RNA polymerase II transcription. Nature 525:7568, pages 274-277.
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Inbal Nussbaum, Esther Weindling, Ritta Jubran, Aviv Cohen & Shoshana Bar-Nun. (2014) Deteriorated Stress Response in Stationary-Phase Yeast: Sir2 and Yap1 Are Essential for Hsf1 Activation by Heat Shock and Oxidative Stress, Respectively. PLoS ONE 9:10, pages e111505.
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Takuya Tsubota, Keiro Uchino, Takao K Suzuki, Hiromitsu Tanaka, Takumi Kayukawa, Tetsuro Shinoda & Hideki Sezutsu. (2014) Identification of a Novel Strong and Ubiquitous Promoter/Enhancer in the Silkworm Bombyx mori . G3 Genes|Genomes|Genetics 4:7, pages 1347-1357.
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Artem K. Velichko, Elena N. Markova, Nadezhda V. Petrova, Sergey V. Razin & Omar L. Kantidze. (2013) Mechanisms of heat shock response in mammals. Cellular and Molecular Life Sciences 70:22, pages 4229-4241.
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William H. Light, Jonathan Freaney, Varun Sood, Abbey Thompson, Agustina D'Urso, Curt M. Horvath & Jason H. Brickner. (2013) A Conserved Role for Human Nup98 in Altering Chromatin Structure and Promoting Epigenetic Transcriptional Memory. PLoS Biology 11:3, pages e1001524.
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Ho Sung Rhee & B. Franklin Pugh. (2012) Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 483:7389, pages 295-301.
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Theresia Lassak, Eva Schneider, Michael Bussmann, Dagmar Kurtz, J. Robert Manak, Thyagarajan Srikantha, David R. Soll & Joachim F. Ernst. (2011) Target specificity of the Candida albicans Efg1 regulator. Molecular Microbiology 82:3, pages 602-618.
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David S. Gross, Ronald L. Klein & Stephan N. Witt. 2011. Protein Chaperones and Protection from Neurodegenerative Diseases. Protein Chaperones and Protection from Neurodegenerative Diseases 385 421 .
Mitsuaki Fujimoto & Akira Nakai. (2010) The heat shock factor family and adaptation to proteotoxic stress. FEBS Journal 277:20, pages 4112-4125.
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T. Y. Erkina, Y. Zou, S. Freeling, V. I. Vorobyev & A. M. Erkine. (2010) Functional interplay between chromatin remodeling complexes RSC, SWI/SNF and ISWI in regulation of yeast heat shock genes. Nucleic Acids Research 38:5, pages 1441-1449.
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Susan Nicholls, Michelle D. Leach, Claire L. Priest & Alistair J. P. Brown. (2009) Role of the heat shock transcription factor, Hsf1, in a major fungal pathogen that is obligately associated with warm-blooded animals. Molecular Microbiology 74:4, pages 844-861.
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Selena B. Kremer & David S. Gross. (2009) SAGA and Rpd3 Chromatin Modification Complexes Dynamically Regulate Heat Shock Gene Structure and Expression. Journal of Biological Chemistry 284:47, pages 32914-32931.
Crossref
Xiaochun Fan & Kevin Struhl. (2009) Where Does Mediator Bind In Vivo?. PLoS ONE 4:4, pages e5029.
Crossref
T. Y. Erkina, M. V. Lavrova & A. M. Erkine. (2009) Alternative ways of stress regulation in Saccharomyces cerevisiae cells: Transcriptional activators Msn2 and Msn4. Cell and Tissue Biology 3:2, pages 121-129.
Crossref
Arun K. Mankan, Matthew W. Lawless, Steven G. Gray, Dermot Kelleher & Ross McManus. (2009) NF-κB regulation: the nuclear response. Journal of Cellular and Molecular Medicine 13:4, pages 631-643.
Crossref
Noritaka Yamamoto, Yuka Maeda, Aya Ikeda & Hiroshi Sakurai. (2008) Regulation of Thermotolerance by Stress-Induced Transcription Factors in Saccharomyces cerevisiae . Eukaryotic Cell 7:5, pages 783-790.
Crossref
Joseph T Wade & Kevin Struhl. (2008) The transition from transcriptional initiation to elongation. Current Opinion in Genetics & Development 18:2, pages 130-136.
Crossref
Sabrina Barchetta, Antonietta La Terza, Patrizia Ballarini, Sandra Pucciarelli & Cristina Miceli. (2008) Combination of Two Regulatory Elements in the Tetrahymena thermophila HSP70-1 Gene Controls Heat Shock Activation . Eukaryotic Cell 7:2, pages 379-386.
Crossref
Maria Theodoraki, Marianthi Tatari, George Chrysanthis, Antigone Zacharopoulou,Anastassios C. Mintzas. (2008) Structural characterization of the medflyhsp83 gene and functional analysis of its proximal promoter region in vivo by germ-line transformation. Archives of Insect Biochemistry and Physiology 67:1, pages 20-35.
Crossref
Richard Voellmy. 2007. Cell Stress Proteins. Cell Stress Proteins 122 139 .
Ning Li, Le-Min Zhang, Ke-Qin Zhang, Jing-Shi Deng, Ralf Prändl & Fritz Schöffl. (2006) Effects of Heat Stress on Yeast Heat Shock Factor-Promoter Binding <italic>In Vivo</italic>. Acta Biochimica et Biophysica Sinica 38:5, pages 356-362.
Crossref
G. Yagil. (2006) DNA tracts composed of only two bases concentrate in gene promoters. Genomics 87:5, pages 591-597.
Crossref
Harpreet Singh, Alexander M Erkine, Selena B Kremer, Harry M Duttweiler, Donnie A Davis, Jabed Iqbal, Rachel R Gross & David S Gross. (2006) A Functional Module of Yeast Mediator That Governs the Dynamic Range of Heat-Shock Gene Expression. Genetics 172:4, pages 2169-2184.
Crossref
R. Voellmy. 2006. Molecular Chaperones in Health and Disease. Molecular Chaperones in Health and Disease 43 68 .
Arindam Dasgupta, Sarah A Juedes, Rebekka O Sprouse & David T Auble. (2005) Mot1-mediated control of transcription complex assembly and activity. The EMBO Journal 24:9, pages 1717-1729.
Crossref
Scott B Ferguson, Erik S Anderson, Robyn B Harshaw, Tim Thate, Nancy L Craig & Hillary C M Nelson. (2005) Protein Kinase A Regulates Constitutive Expression of Small Heat-Shock Genes in an Msn2/4p-Independent and Hsf1p-Dependent Manner in Saccharomyces cerevisiae. Genetics 169:3, pages 1203-1214.
Crossref
Ji-Sook Hahn & Dennis J. Thiele. (2004) Activation of the Saccharomyces cerevisiae Heat Shock Transcription Factor Under Glucose Starvation Conditions by Snf1 Protein Kinase. Journal of Biological Chemistry 279:7, pages 5169-5176.
Crossref
Richard Voellmy. 2004. 143 185 .
Vladimir A Bondarenko, Ye V Liu, Yong I Jiang & Vasily M Studitsky. (2003) Communication over a large distance: enhancers and insulators. Biochemistry and Cell Biology 81:3, pages 241-251.
Crossref
Jesse Bertinato, Julianna J Tomlinson, Caroline Schild-Poulter & Robert J.G Haché. (2003) Evidence implicating Ku antigen as a structural factor in RNA polymerase II-mediated transcription. Gene 302:1-2, pages 53-64.
Crossref
Tomohusa Tachibana, Shiho Astumi, Ryo Shioda, Masaru Ueno, Masahiro Uritani & Takashi Ushimaru. (2002) A Novel Non-conventional Heat Shock Element Regulates Expression of MDJ1 Encoding a DnaJ Homolog in Saccharomyces cerevisiae. Journal of Biological Chemistry 277:25, pages 22140-22146.
Crossref
Lemin Zhang, Gabriele Eggers-Schumacher, Fritz Schöffl & Ralf Prändl. (2001) Analysis of heat-shock transcription factor-DNA binding in Arabidopsis suspension cultures by UV laser crosslinking. The Plant Journal 28:2, pages 217-223.
Crossref
Fatima-Zahra Idrissi, Natalia Garcia-Reyero, Juan B. Fernandez-Larrea & Benjamin Piña. (2001) Alternative Mechanisms of Transcriptional Activation by Rap1p. Journal of Biological Chemistry 276:28, pages 26090-26098.
Crossref
Craig Martens, Brian Krett & Paul J. Laybourn. (2001) RNA polymerase II and TBP occupy the repressed CYC1 promoter. Molecular Microbiology 40:4, pages 1009-1019.
Crossref
Edward A. Sekinger & David S. Gross. (2001) Silenced Chromatin Is Permissive to Activator Binding and PIC Recruitment. Cell 105:3, pages 403-414.
Crossref
Mara Amoros & Francisco Estruch. (2001) Hsf1p and Msn2/4p cooperate in the expression of Saccharomyces cerevisiae genes HSP26 and HSP104 in a gene- and stress type-dependent manner. Molecular Microbiology 39:6, pages 1523-1532.
Crossref
Hiroshi Sakurai & Toshio Fukasawa. (2000) Functional Connections between Mediator Components and General Transcription Factors of Saccharomyces cerevisiae. Journal of Biological Chemistry 275:47, pages 37251-37256.
Crossref
Francisco Estruch. (2000) Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast. FEMS Microbiology Reviews 24:4, pages 469-486.
Crossref
Desmond C. RaittAnthony L. JohnsonAlexander M. ErkineKozo Makino, Brian Morgan, David S. GrossLeland H. Johnston. (2000) The Skn7 Response Regulator of Saccharomyces cerevisiae Interacts with Hsf1 In Vivo and Is Required for the Induction of Heat Shock Genes by Oxidative Stress . Molecular Biology of the Cell 11:7, pages 2335-2347.
Crossref
Sengyong Lee, Tage Carlson, Noah Christian, Kristi Lea, Jennifer Kedzie, James P. Reilly & J. José Bonner. (2000) The Yeast Heat Shock Transcription Factor Changes Conformation in Response to Superoxide and Temperature. Molecular Biology of the Cell 11:5, pages 1753-1764.
Crossref
Denis Ostapenko & Opher Gileadi. (2000) Rad25p, a DNA helicase subunit of yeast transcription factor TFIIH, is required for promoter escape in vivo. Gene 245:1, pages 109-117.
Crossref
Jeanne A Hardy, Scott T.R Walsh & Hillary C.M Nelson. (2000) Role of an α-helical bulge in the yeast heat shock transcription factor 1 1Edited by F. E. Cohen. Journal of Molecular Biology 295:3, pages 393-409.
Crossref
Phillip C.C. Liu & Dennis J. Thiele. (1999) Modulation of Human Heat Shock Factor Trimerization by the Linker Domain. Journal of Biological Chemistry 274:24, pages 17219-17225.
Crossref
Xiao-Yong Li, Amy Virbasius, Xiaochuan Zhu & Michael R. Green. (1999) Enhancement of TBP binding by activators and general transcription factors. Nature 399:6736, pages 605-609.
Crossref
G. C. Li & N. F. Mivechi. 1999. Stress Proteins. Stress Proteins 43 68 .
Yan Zhang, Srinagesh Koushik, Rujuan Dai & Nahid F. Mivechi. (1998) Structural Organization and Promoter Analysis of Murine Heat Shock Transcription Factor-1 Gene. Journal of Biological Chemistry 273:49, pages 32514-32521.
Crossref
Gad Yagil, Frida Shimron & Michael Tal. (1998) DNA unwinding in the CYC1 and DED1 yeast promoters. Gene 225:1-2, pages 153-162.
Crossref
Andreas Reindl & Fritz Schöffl. (1998) Interaction between the Arabidopsis thaliana heat shock transcription factor HSF1 and the TATA binding protein TBP . FEBS Letters 436:3, pages 318-322.
Crossref
Deborah S. Geraghty, Holly B. Sucic, Junjie Chen & David S. Pederson. (1998) Evidence That Partial Unwrapping of DNA from Nucleosomes Facilitates the Binding of Heat Shock Factor following DNA Replication in Yeast. Journal of Biological Chemistry 273:32, pages 20463-20472.
Crossref
Péter Csermely, Tamás Schnaider, Csaba So″ti, Zoltán Prohászka & Gábor Nardai. (1998) The 90-kDa Molecular Chaperone Family. Pharmacology & Therapeutics 79:2, pages 129-168.
Crossref
Sanjeev H. Satyal, Dayue Chen, Susan G. Fox, James M. Kramer & Richard I. Morimoto. (1998) Negative regulation of the heat shock transcriptional response by HSBP1. Genes & Development 12:13, pages 1962-1974.
Crossref
Andrea A. Duina, Helen M. Kalton & Richard F. Gaber. (1998) Requirement for Hsp90 and a CyP-40-type Cyclophilin in Negative Regulation of the Heat Shock Response. Journal of Biological Chemistry 273:30, pages 18974-18978.
Crossref
Kirstie A. Saltsman, Holly L. Prentice & Robert E. Kingston. (1998) The C-terminal hydrophobic repeat ofSchizosaccharomyces pombe heat shock factor is not required for heat-induced DNA-binding. Yeast 14:8, pages 733-746.
Crossref
Dong-ki Lee & John T. Lis. (1998) Transcriptional activation independent of TFIIH kinase and the RNA polymerase II mediator in vivo. Nature 393:6683, pages 389-392.
Crossref
Franco Fracella, Carl Scholle, Andreas Kallies, Thomas Häfker, Torsten Schröder & Ludger Rensing. (1997) Differential HSC70 expression during asexual development of Neurospora crassa. Microbiology 143:11, pages 3615-3624.
Crossref
Becky L. Drees, Eva K. Grotkopp & Hillary C.M. Nelson. (1997) The GCN4 leucine zipper can functionally substitute for the heat shock transcription factor’s trimerization domain. Journal of Molecular Biology 273:1, pages 61-74.
Crossref
Masako Tanabe, Akira Nakai, Yoshinori Kawazoe & Kazuhiro Nagata. (1997) Different Thresholds in the Responses of Two Heat Shock Transcription Factors, HSF1 and HSF3. Journal of Biological Chemistry 272:24, pages 15389-15395.
Crossref
Philippe A. Mercier, Jaroslaw Foksa, Nick Ovsenek & J. Timothy Westwood. (1997) Xenopus Heat Shock Factor 1 Is a Nuclear Protein before Heat Stress. Journal of Biological Chemistry 272:22, pages 14147-14151.
Crossref
Mark Ptashne & Alexander Gann. (1997) Transcriptional activation by recruitment. Nature 386:6625, pages 569-577.
Crossref
T Chi & M Carey. (1996) Assembly of the isomerized TFIIA--TFIID--TATA ternary complex is necessary and sufficient for gene activation.. Genes & Development 10:20, pages 2540-2550.
Crossref
C Saavedra, K S Tung, D C Amberg, A K Hopper & C N Cole. (1996) Regulation of mRNA export in response to stress in Saccharomyces cerevisiae.. Genes & Development 10:13, pages 1608-1620.
Crossref
X D Liu & D J Thiele. (1996) Oxidative stress induced heat shock factor phosphorylation and HSF-dependent activation of yeast metallothionein gene transcription.. Genes & Development 10:5, pages 592-603.
Crossref
José J. Cotto, Michael Kline & Richard I. Morimoto. (1996) Activation of Heat Shock Factor 1 DNA Binding Precedes Stress-induced Serine Phosphorylation. Journal of Biological Chemistry 271:7, pages 3355-3358.
Crossref
Lilyann Novak Frazer & David Moore. (1995) One stop mycology. Mycological Research 99:11, pages 1399-1408.
Crossref
Andrew K. Sewell, Fumihiko Yokoya, Wei Yu, Terumi Miyagawa, Tetsuo Murayama & Dennis R. Winge. (1995) Mutated Yeast Heat Shock Transcription Factor Exhibits Elevated Basal Transcriptional Activation and Confers Metal Resistance. Journal of Biological Chemistry 270:42, pages 25079-25086.
Crossref

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