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Molecular and Cellular Biology Volume 16, 1996 - Issue 7
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Research Article

Differences between MyoD DNA Binding and Activation Site Requirements Revealed by Functional Random Sequence Selection

Jing Huang1 Howard Hughes Medical Institute, Fred Hutchinson Cancer Research Center, Seattle, Washington98104;2 Institute for Genetic Medicine and Department of Biochemistry and Molecular Biology, USC School of Medicine, Los Angeles, California90033
,
T. Keith Blackwell3 Center for Blood Research and Harvard Medical School, Boston, Massachusetts02115
,
Larry Kedes2 Institute for Genetic Medicine and Department of Biochemistry and Molecular Biology, USC School of Medicine, Los Angeles, California90033
&
Harold Weintraub1 Howard Hughes Medical Institute, Fred Hutchinson Cancer Research Center, Seattle, Washington98104
Pages 3893-3900 | Received 14 Dec 1995, Accepted 26 Mar 1996, Published online: 29 Mar 2023

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Estela Muñoz & Ruben Baler. (2003) The Circadian E-Box: When Perfect Is Not Good Enough. Chronobiology International 20:3, pages 371-388.
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Mikael Sigvardsson. (2000) Overlapping Expression of Early B-Cell Factor and Basic Helix-Loop-Helix Proteins as a Mechanism To Dictate B-Lineage-Specific Activity of the λ5 Promoter. Molecular and Cellular Biology 20:10, pages 3640-3654.
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Thiphaphone Kophengnavong, Jennifer E. Michnowicz & T. Keith Blackwell. (2000) Establishment of Distinct MyoD, E2A, and Twist DNA Binding Specificities by Different Basic Region-DNA Conformations. Molecular and Cellular Biology 20:1, pages 261-272.
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Kumaralal Kaluarachchi, DavidG. Gorenstein & BruceA. Luxon. (2000) How Do Proteins Recognize DNA? Solution Structure and Local Conformational Dynamics of Lac Operators by 2D NMR. Journal of Biomolecular Structure and Dynamics 17:sup1, pages 123-133.
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Jing Huang, Hal Weintraub & Larry Kedes. (1998) Intramolecular Regulation of MyoD Activation Domain Conformation and Function. Molecular and Cellular Biology 18:9, pages 5478-5484.
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Yasuo Hamamori, Hung-Yi Wu, Vittorio Sartorelli & Larry Kedes. (1997) The Basic Domain of Myogenic Basic Helix-Loop-Helix (bHLH) Proteins Is the Novel Target for Direct Inhibition by Another bHLH Protein, Twist. Molecular and Cellular Biology 17:11, pages 6563-6573.
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Vittorio Sartorelli, Jing Huang, Yasuo Hamamori & Larry Kedes. (1997) Molecular Mechanisms of Myogenic Coactivation by p300: Direct Interaction with the Activation Domain of MyoD and with the MADS Box of MEF2C. Molecular and Cellular Biology 17:2, pages 1010-1026.
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Articles from other publishers (28)

Xabier de Martin, Reza Sodaei & Gabriel Santpere. (2021) Mechanisms of Binding Specificity among bHLH Transcription Factors. International Journal of Molecular Sciences 22:17, pages 9150.
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Gabriela Galicia-Vázquez, Sergio Di Marco, Xian J. Lian, Jennifer F. Ma, Imed E. Gallouzi & Jerry Pelletier. (2014) Regulation of Eukaryotic Initiation Factor 4AII by MyoD during Murine Myogenic Cell Differentiation. PLoS ONE 9:1, pages e87237.
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Wei Jin, Yang Liu, Li Chen, Hua Zhu, Gen-hong Di, Hong Ling, Jiong Wu & Zhi-ming Shao. (2010) Involvement of MyoD and c-myb in regulation of basal and estrogen-induced transcription activity of the BRCA1 gene. Breast Cancer Research and Treatment 125:3, pages 699-713.
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Peter J. Gianakopoulos, Virja Mehta, Anastassia Voronova, Yi Cao, Zizhen Yao, Josée Coutu, Xiaonan Wang, Michelle S. Waddington, Stephen J. Tapscott & Ilona S. Skerjanc. (2011) MyoD Directly Up-regulates Premyogenic Mesoderm Factors during Induction of Skeletal Myogenesis in Stem Cells. Journal of Biological Chemistry 286:4, pages 2517-2525.
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Charis L. Himeda, Xiaolan Chen & Stephen D. Hauschka. 2011. Muscle Gene Therapy. Muscle Gene Therapy 3 19 .
Ok Jeong Noh, Yong Hwan Park, Youn Wook Chung & Ick Young Kim. (2010) Transcriptional Regulation of Selenoprotein W by MyoD during Early Skeletal Muscle Differentiation. Journal of Biological Chemistry 285:52, pages 40496-40507.
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Wahyu Hendrati Raharjo, Brittany C. Logan, Shoubin Wen, John M. Kalb & Jeb Gaudet. (2010) In vitro and in vivo characterization of Caenorhabditis elegans PHA-4/FoxA response elements. Developmental Dynamics 239:8, pages 2219-2232.
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Yi Cao, Zizhen Yao, Deepayan Sarkar, Michael Lawrence, Gilson J. Sanchez, Maura H. Parker, Kyle L. MacQuarrie, Jerry Davison, Martin T. Morgan, Walter L. Ruzzo, Robert C. Gentleman & Stephen J. Tapscott. (2010) Genome-wide MyoD Binding in Skeletal Muscle Cells: A Potential for Broad Cellular Reprogramming. Developmental Cell 18:4, pages 662-674.
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Ryan B. Smit, Ralf Schnabel & Jeb Gaudet. (2008) The HLH-6 Transcription Factor Regulates C. elegans Pharyngeal Gland Development and Function. PLoS Genetics 4:10, pages e1000222.
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Laurence DuboisJonathan EnriquezVirginie DaburonFabien CrozetGaelle LebretonMichèle CrozatierAlain Vincent. (2007) collier transcription in a single Drosophila muscle lineage: the combinatorial control of muscle identity . Development 134:24, pages 4347-4355.
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Letha J. Sooter, Phillip Gates-Shannon & Andrew D. Ellington. (2016) Automated Assessment of the DNA-Binding Capacity of a Proteome by In Vitro Selection . JALA: Journal of the Association for Laboratory Automation 12:3, pages 135-142.
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Henry K. BayeleHarry McArdleSurjit K.S. Srai. (2006) Cis and trans regulation of hepcidin expression by upstream stimulatory factor. Blood 108:13, pages 4237-4245.
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Doris Heidysch Beylkin, David L. Allen & Leslie A. Leinwand. (2006) MyoD, Myf5, and the calcineurin pathway activate the developmental myosin heavy chain genes. Developmental Biology 294:2, pages 541-553.
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Yi Cao, Roshan M Kumar, Bennett H Penn, Charlotte A Berkes, Charles Kooperberg, Laurie A Boyer, Richard A Young & Stephen J Tapscott. (2006) Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters. The EMBO Journal 25:3, pages 502-511.
Crossref
Po Zhao, Giuseppina Caretti, Stephanie Mitchell, Wallace L. McKeehan, Adele L. Boskey, Lauren M. Pachman, Vittorio Sartorelli & Eric P. Hoffman. (2006) Fgfr4 Is Required for Effective Muscle Regeneration in Vivo. Journal of Biological Chemistry 281:1, pages 429-438.
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Charlotte A Berkes, Donald A Bergstrom, Bennett H Penn, Karen J Seaver, Paul S Knoepfler & Stephen J Tapscott. (2004) Pbx Marks Genes for Activation by MyoD Indicating a Role for a Homeodomain Protein in Establishing Myogenic Potential. Molecular Cell 14:4, pages 465-477.
Crossref
Po Zhao, Jinwook Seo, Zuyi Wang, Yue Wang, Ben Shneiderman & Eric P. Hoffman. (2003) In vivo filtering of in vitro expression data reveals MyoD targets. Comptes Rendus Biologies 326:10-11, pages 1049-1065.
Crossref
Estela Muñoz, Michelle Brewer & Ruben Baler. (2002) Circadian Transcription. Journal of Biological Chemistry 277:39, pages 36009-36017.
Crossref
Jae-Jung Lee, Young-Ah Moon, Joo-Hun Ha, Do-Jun Yoon, Yong-Ho Ahn & Kyung-Sup Kim. (2001) Cloning of Human Acetyl-CoA Carboxylase β Promoter and Its Regulation by Muscle Regulatory Factors. Journal of Biological Chemistry 276:4, pages 2576-2585.
Crossref
Pier Lorenzo Puri & Vittorio Sartorelli. (2000) Regulation of muscle regulatory factors by DNA-binding, interacting proteins, and post-transcriptional modifications. Journal of Cellular Physiology 185:2, pages 155-173.
Crossref
Nicholas J. Koszewski, Hartmut H. Malluche & John Russell. (2000) Vitamin D receptor interactions with positive and negative DNA response elements: an interference footprint comparison. The Journal of Steroid Biochemistry and Molecular Biology 72:3-4, pages 125-132.
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Elena Ceccarelli, Michael J. McGrew, Tom Nguyen, Uta Grieshammer, David Horgan, Stephen H. Hughes & Nadia Rosenthal. (1999) An E Box Comprises a Positional Sensor for Regional Differences in Skeletal Muscle Gene Expression and Methylation. Developmental Biology 213:1, pages 217-229.
Crossref
A. Daniel Johnson & Gary K. Owens. (1999) Differential activation of the SMαA promoter in smooth vs. skeletal muscle cells by bHLH factors. American Journal of Physiology-Cell Physiology 276:6, pages C1420-C1431.
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Jean-Louis Bessereau, Vincent Laudenbach, Chantal Le Poupon & Jean-Pierre Changeux. (1998) Nonmyogenic Factors Bind Nicotinic Acetylcholine Receptor Promoter Elements Required for Response to Denervation. Journal of Biological Chemistry 273:21, pages 12786-12793.
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Stefan Hermann, Juha Saarikettu, Jacqueline Onions, Kate Hughes & Thomas Grundström. (1998) Calcium regulation of basic helix-loop-helix transcription factors. Cell Calcium 23:2-3, pages 135-142.
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Ferenc Müller, Darren W. Williams, Julianna Kobolák, Laurent Gauvry, Geoffrey Goldspink, László Orbán & Norman Maclean. (1997) Activator effect of coinjected enhancers on the muscle-specific expression of promoters in zebrafish embryos. Molecular Reproduction and Development 47:4, pages 404-412.
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Weibiao Huang & Erik Bateman. (1997) Transcription of the Acanthamoeba TATA-binding Protein Gene. Journal of Biological Chemistry 272:6, pages 3852-3859.
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. (1996) Short Communication. Biological Chemistry Hoppe-Seyler 377:12, pages 847-864.
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