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Molecular and Cellular Biology Volume 17, 1997 - Issue 2
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Research Article

The RAD7, RAD16, and RAD23 Genes of Saccharomyces cerevisiae: Requirement for Transcription-Independent Nucleotide Excision Repair In Vitro and Interactions between the Gene Products

Zhigang WangLaboratory of Molecular Pathology, Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas75235
,
Shuguang WeiLaboratory of Molecular Pathology, Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas75235
,
Simon H. ReedLaboratory of Molecular Pathology, Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas75235
,
Xiaohua WuLaboratory of Molecular Pathology, Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas75235
,
Jesper Q. SvejstrupDepartment of Structural Biology, Stanford University School of Medicine, Stanford, California94305
,
William J. FeaverDepartment of Structural Biology, Stanford University School of Medicine, Stanford, California94305
,
Roger D. KornbergDepartment of Structural Biology, Stanford University School of Medicine, Stanford, California94305
&
Errol C. FriedbergLaboratory of Molecular Pathology, Department of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas75235Correspondence[email protected]
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Pages 635-643 | Received 24 Jul 1996, Accepted 30 Oct 1996, Published online: 29 Mar 2023

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Maxime Tremblay, Yumin Teng, Michel Paquette, Raymond Waters & Antonio Conconi. (2008) Complementary Roles of Yeast Rad4p and Rad34p in Nucleotide Excision Repair of Active and Inactive rRNA Gene Chromatin. Molecular and Cellular Biology 28:24, pages 7504-7513.
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Kerrington L. Ramsey, Joshua J. Smith, Arindam Dasgupta, Nazif Maqani, Patrick Grant & David T. Auble. (2004) The NEF4 Complex Regulates Rad4 Levels and Utilizes Snf2/Swi2-Related ATPase Activity for Nucleotide Excision Repair. Molecular and Cellular Biology 24:14, pages 6362-6378.
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Martin L. Smith, James M. Ford, M. Christine Hollander, Rachel A. Bortnick, Sally A. Amundson, Young R. Seo, Chu-Xia Deng, Philip C. Hanawalt & Albert J. Fornace$suffix/text()$suffix/text(). (2000) p53-Mediated DNA Repair Responses to UV Radiation: Studies of Mouse Cells Lacking p53, p21, and/orgadd45 Genes. Molecular and Cellular Biology 20:10, pages 3705-3714.
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Chikahide Masutani, Marito Araki, Kaoru Sugasawa, Peter J. van der Spek, Ayumi Yamada, Akio Uchida, Takafumi Maekawa, Dirk Bootsma, Jan H. J. Hoeijmakers & Fumio Hanaoka. (1997) Identification and Characterization of XPC-Binding Domain of hHR23B. Molecular and Cellular Biology 17:12, pages 6915-6923.
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Articles from other publishers (48)

Preeti Khan & Ronita Nag Chaudhuri. (2022) Acetylation of H3K56 orchestrates UV-responsive chromatin events that generate DNA accessibility during Nucleotide Excision Repair. DNA Repair 113, pages 103317.
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Debamita Paul, Hong Mu, Amirrasoul Tavakoli, Qing Dai, Xuejing Chen, Sagnik Chakraborty, Chuan He, Anjum Ansari, Suse Broyde & Jung-Hyun Min. (2020) Tethering-facilitated DNA ‘opening’ and complementary roles of β-hairpin motifs in the Rad4/XPC DNA damage sensor protein. Nucleic Acids Research 48:21, pages 12348-12364.
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Lindsey J. Long, Po-Hsuen Lee, Eric M. Small, Cory Hillyer, Yan Guo & Mary Ann Osley. (2020) Regulation of UV damage repair in quiescent yeast cells. DNA Repair 90, pages 102861.
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Warayutt Pilap, Sudarat Thanonkeo, Preekamol Klanrit & Pornthap Thanonkeo. (2018) The potential of the newly isolated thermotolerant Kluyveromyces marxianus for high-temperature ethanol production using sweet sorghum juice. 3 Biotech 8:2.
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Triparna Lahari, Janelle Lazaro & Dana Schroeder. (2017) RAD4 and RAD23/HMR Contribute to Arabidopsis UV Tolerance. Genes 9:1, pages 8.
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Miklos Halmai, Orsolya Frittmann, Zoltan Szabo, Andreea Daraba, Vamsi K. Gali, Eva Balint & Ildiko Unk. (2016) Mutations at the Subunit Interface of Yeast Proliferating Cell Nuclear Antigen Reveal a Versatile Regulatory Domain. PLOS ONE 11:8, pages e0161307.
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Raymond Waters, Patrick van Eijk & Simon Reed. (2015) Histone modification and chromatin remodeling during NER. DNA Repair 36, pages 105-113.
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Errol C. Friedberg. (2014) Master Molecule, Heal Thyself. Journal of Biological Chemistry 289:20, pages 13691-13700.
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Raymond Waters, Katie Evans, Mark Bennett, Shirong Yu & Simon Reed. (2012) Nucleotide Excision Repair in Cellular Chromatin: Studies with Yeast from Nucleotide to Gene to Genome. International Journal of Molecular Sciences 13:9, pages 11141-11164.
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Ling ZhangKristi JonesFeng Gong. (2009) The molecular basis of chromatin dynamics during nucleotide excision repairThis paper is one of a selection of papers published in this Special Issue, entitled 29th Annual International Asilomar Chromatin and Chromosomes Conference, and has undergone the Journal’s usual peer review process.. Biochemistry and Cell Biology 87:1, pages 265-272.
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Shirong Yu, Julia B. Smirnova, Errol C. Friedberg, Bruce Stillman, Masahiro Akiyama, Tom Owen-Hughes, Raymond Waters & Simon H. Reed. (2009) ABF1-binding Sites Promote Efficient Global Genome Nucleotide Excision Repair. Journal of Biological Chemistry 284:2, pages 966-973.
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Haiping Kou, Ying Zhou, R. M. Charlotte Gorospe & Zhigang Wang. (2008) Mms19 protein functions in nucleotide excision repair by sustaining an adequate cellular concentration of the TFIIH component Rad3. Proceedings of the National Academy of Sciences 105:41, pages 15714-15719.
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Daniel Vlček, Andrea Ševčovičová, Barbara Sviežená, Eliška Gálová & Eva Miadoková. (2007) Chlamydomonas reinhardtii: a convenient model system for the study of DNA repair in photoautotrophic eukaryotes. Current Genetics 53:1, pages 1-22.
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Thomas G Gillette, Shirong Yu, Zheng Zhou, Raymond Waters, Stephen Albert Johnston & Simon H Reed. (2006) Distinct functions of the ubiquitin–proteasome pathway influence nucleotide excision repair. The EMBO Journal.
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Errol C. Friedberg, Graham C. Walker, Wolfram Siede, Richard D. Wood, Roger A. Schultz & Tom Ellenberger. 2005. DNA Repair and Mutagenesis. DNA Repair and Mutagenesis 267 315 .
Kylie J. Walters, Amanda M. Goh, Qinghua Wang, Gerhard Wagner & Peter M. Howley. (2004) Ubiquitin family proteins and their relationship to the proteasome: a structural perspective. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1695:1-3, pages 73-87.
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Lori Lommel, Tatiana Ortolan, Li Chen, Kiran Madura & Kevin S. Sweder. (2002) Proteolysis of a nucleotide excision repair protein by the 26S proteasome. Current Genetics 42:1, pages 9-20.
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Tadashi Suzuki, Hangil Park & William J. Lennarz. (2002) Cytoplasmic peptide: N ‐glycanase (PNGase) in eukaryotic cells: occurrence, primary structure, and potential functions . The FASEB Journal 16:7, pages 635-641.
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Thomas G. Gillette, Wenya Huang, Steven Jon Russell, Simon H. Reed, Stephen Albert Johnston & Errol C. Friedberg. (2001) The 19S complex of the proteasome regulates nucleotide excision repair in yeast. Genes & Development 15:12, pages 1528-1539.
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Tadashi Suzuki, Hangil Park, Michael A. Kwofie & William J. Lennarz. (2001) Rad23 Provides a Link between the Png1 Deglycosylating Enzyme and the 26 S Proteasome in Yeast. Journal of Biological Chemistry 276:24, pages 21601-21607.
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Dawn Batty, Vesna Rapic’-Otrin, Arthur S Levine & Richard D Wood. (2000) Stable binding of human XPC complex to irradiated DNA confers strong discrimination for damaged sites 1 1Edited by M. Yaniv. Journal of Molecular Biology 300:2, pages 275-290.
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Satya Prakash & Louise Prakash. (2000) Nucleotide excision repair in yeast. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 451:1-2, pages 13-24.
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Frederic J. Kaye, Sanjay Modi, Irena Ivanovska, Eugene V. Koonin, Kenneth Thress, Akihito Kubo, Sally Kornbluth & Mark D. Rose. (2000) A family of ubiquitin-like proteins binds the ATPase domain of Hsp70-like Stch. FEBS Letters 467:2-3, pages 348-355.
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Sofia J. Araújo, Franck Tirode, Frederic Coin, Helmut Pospiech, Juhani E. Syväoja, Manuel Stucki, Ulrich Hübscher, Jean-Marc Egly & Richard D. Wood. (2000) Nucleotide excision repair of DNA with recombinant human proteins: definition of the minimal set of factors, active forms of TFIIH, and modulation by CAK. Genes & Development 14:3, pages 349-359.
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William J. Feaver, Wenya Huang, Opher Gileadi, Lawrence Myers, Claes M. Gustafsson, Roger D. Kornberg & Errol C. Friedberg. (2000) Subunit Interactions in Yeast Transcription/Repair Factor TFIIH. Journal of Biological Chemistry 275:8, pages 5941-5946.
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Marcel Lombaerts, Jerrelyne I. Goeloe, Hans den Dulk, Jourica A. Brandsma & Jaap Brouwer. (2000) Identification and Characterization of the rhp23+ DNA Repair Gene in Schizosaccharomyces pombe. Biochemical and Biophysical Research Communications 268:1, pages 210-215.
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Dawn P. Batty & Richard D. Wood. (2000) Damage recognition in nucleotide excision repair of DNA. Gene 241:2, pages 193-204.
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M. Lombaerts, P. H. Peltola, R. Visse, H. den Dulk, J. A. Brandsma & J. Brouwer. (1999) Characterization of the rhp7+ and rhp16+ genes in Schizosaccharomyces pombe. Nucleic Acids Research 27:17, pages 3410-3416.
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Sofia J. Araújo & Richard D. Wood. (1999) Protein complexes in nucleotide excision repair. Mutation Research/DNA Repair 435:1, pages 23-33.
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Maria Meijer & Michael J. Smerdon. (1999) Accessing DNA damage in chromatin: Insights from transcription. BioEssays 21:7, pages 596-603.
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Sushant Kumar, Andrea L. Talis & Peter M. Howley. (1999) Identification of HHR23A as a Substrate for E6-associated Protein-mediated Ubiquitination. Journal of Biological Chemistry 274:26, pages 18785-18792.
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Steven Jon Russell, Simon H Reed, Wenya Huang, Errol C Friedberg & Stephen Albert Johnston. (1999) The 19S Regulatory Complex of the Proteasome Functions Independently of Proteolysis in Nucleotide Excision Repair. Molecular Cell 3:6, pages 687-695.
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Elena Braithwaite, Xiaohua Wu & Zhigang Wang. (1999) Repair of DNA lesions: mechanisms and relative repair efficiencies. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 424:1-2, pages 207-219.
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Lars E.T. Jansen, Richard A. Verhage & Jaap Brouwer. (1998) Preferential Binding of Yeast Rad4·Rad23 Complex to Damaged DNA. Journal of Biological Chemistry 273:50, pages 33111-33114.
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Simon H. Reed, Zhaoyang You & Errol C. Friedberg. (1998) The Yeast RAD7 and RAD16 Genes Are Required for Postincision Events during Nucleotide Excision Repair. Journal of Biological Chemistry 273:45, pages 29481-29488.
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Alexander Gragerov, Tomoshige Kino, Galina Ilyina-Gragerova, George P. Chrousos & George N. Pavlakis. (1998) HHR23A, the Human Homologue of the Yeast Repair Protein RAD23, Interacts Specifically with Vpr Protein and Prevents Cell Cycle Arrest but Not the Transcriptional Effects of Vpr. Virology 245:2, pages 323-330.
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Shuguang Wei & Errol C. Friedberg. (1998) A fragment of the yeast DNA repair protein Rad4 confers toxicity to E. coli and is required for its interaction with Rad7 protein. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 400:1-2, pages 127-133.
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Sami N. Guzder, Patrick Sung, Louise Prakash & Satya Prakash. (1998) The DNA-dependent ATPase Activity of Yeast Nucleotide Excision Repair Factor 4 and Its Role in DNA Damage Recognition. Journal of Biological Chemistry 273:11, pages 6292-6296.
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Cherylene Schauber, Li Chen, Prasad Tongaonkar, Irving Vega, David Lambertson, Warren Potts & Kiran Madura. (1998) Rad23 links DNA repair to the ubiquitin/proteasome pathway. Nature 391:6668, pages 715-718.
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R. A. Verhage, M. Tijsterman, P. van de Putte & J. Brouwer. 1998. DNA Repair. DNA Repair 157 172 .
E. C. Friedberg, W. J. Feaver, W. Huang, M. S. Reagan, W. A. Ramos, K. Rodriguez, S. H. Reed, A. E. Tomkinson, S. Wei & Z.-Y. You. 1998. DNA Repair. DNA Repair 125 139 .
Daniel Vlček, Andrea Slivková, Svetlana Podstavková & Eva Miadoková. (1997) A Chlamydomonas reinhardtii UV-sensitive mutant uvs15 is impaired in a gene involved in several repair pathways. Mutation Research/DNA Repair 385:3, pages 243-249.
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M. S. Reagan & E. C. Friedberg. (1997) Recovery of RNA polymerase II synthesis following DNA damage in mutants of Saccharomyces cerevisiae defective in nucleotide excision repair. Nucleic Acids Research 25:21, pages 4257-4263.
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Sami N. Guzder, Patrick Sung, Louise Prakash & Satya Prakash. (1997) Yeast Rad7-Rad16 Complex, Specific for the Nucleotide Excision Repair of the Nontranscribed DNA Strand, Is an ATP-dependent DNA Damage Sensor. Journal of Biological Chemistry 272:35, pages 21665-21668.
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