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Research Article

A Specific RNA Hairpin Loop Structure Binds the RNA Recognition Motifs of the Drosophila SR Protein B52

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Pages 2649-2657 | Received 19 Dec 1996, Accepted 10 Feb 1997, Published online: 29 Mar 2023

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Read on this site (10)

Leila Aslani, Mahdiyeh Gholami, Mostafa Mobli & Badraldin E. Sayed-Tabatabaei. (2022) Effect of crop load on fruit nutritional and nutraceutical traits of greenhouse tomato. New Zealand Journal of Crop and Horticultural Science 50:4, pages 341-354.
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Ken I HOHMURA, Hua SHI & Kazunori HIRAYOSHI. (2013) Perturbation of Discrete Sites on a Single Protein Domain with RNA Aptamers: Targeting of Different Sides of the TATA-Binding Protein (TBP). Bioscience, Biotechnology, and Biochemistry 77:8, pages 1739-1746.
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Masataka G. Suzuki, Shigeo Imanishi, Naoshi Dohmae, Tomoe Nishimura, Toru Shimada & Shogo Matsumoto. (2008) Establishment of a Novel In Vivo Sex-Specific Splicing Assay System To Identify a trans-Acting Factor That Negatively Regulates Splicing of Bombyx mori dsx Female Exons. Molecular and Cellular Biology 28:1, pages 333-343.
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Emanuele Buratti & Francisco E. Baralle. (2004) Influence of RNA Secondary Structure on the Pre-mRNA Splicing Process. Molecular and Cellular Biology 24:24, pages 10505-10514.
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Emanuele Buratti, Andrés F. Muro, Maurizio Giombi, Daniel Gherbassi, Alessandra Iaconcig & Francisco E. Baralle. (2004) RNA Folding Affects the Recruitment of SR Proteins by Mouse and Human Polypurinic Enhancer Elements in the Fibronectin EDA Exon. Molecular and Cellular Biology 24:3, pages 1387-1400.
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Daron C. Barnard & James G. Patton. (2000) Identification and Characterization of a Novel Serine-Arginine-Rich Splicing Regulatory Protein. Molecular and Cellular Biology 20:9, pages 3049-3057.
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Bryan E. Hoffman & John T. Lis. (2000) Pre-mRNA Splicing by the Essential Drosophila Protein B52: Tissue and Target Specificity. Molecular and Cellular Biology 20:1, pages 181-186.
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Andrés F. Muro, Massimo Caputi, Rajalakshmi Pariyarath, Franco Pagani, Emanuele Buratti & Francisco E. Baralle. (1999) Regulation of Fibronectin EDA Exon Alternative Splicing: Possible Role of RNA Secondary Structure for Enhancer Display. Molecular and Cellular Biology 19:4, pages 2657-2671.
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Akila Mayeda, Gavin R. Screaton, Sharon D. Chandler, Xiang-Dong Fu & Adrian R. Krainer. (1999) Substrate Specificities of SR Proteins in Constitutive Splicing Are Determined by Their RNA Recognition Motifs and Composite Pre-mRNA Exonic Elements. Molecular and Cellular Biology 19:3, pages 1853-1863.
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Thomas D. Schaal & Tom Maniatis. (1999) Selection and Characterization of Pre-mRNA Splicing Enhancers: Identification of Novel SR Protein-Specific Enhancer Sequences. Molecular and Cellular Biology 19:3, pages 1705-1719.
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Articles from other publishers (50)

Tea Anastasia Ruiz-Luis, Carlos Ortuño-Pineda, José Manuel Galindo-Rosales, Odila Saucedo-Cárdenas & Jesús Valdés. (2023) Cooperative Binding of SRSF3 to Structured 3’ss-α Exon RNA during α Exon Inclusion in the ZO-1 mRNA. Current Issues in Molecular Biology 45:1, pages 593-603.
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Jiawei Tang, Youquan Xie, Jingxun Huang, Liao Zhang, Weiye Jiang, Zhiyu Li & Jinlei Bian. (2022) A critical update on the strategies towards small molecule inhibitors targeting Serine/arginine-rich (SR) proteins and Serine/arginine-rich proteins related kinases in alternative splicing. Bioorganic & Medicinal Chemistry 70, pages 116921.
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Eric L Garcia. (2022) Allele-specific alternative splicing of Drosophila Ribosomal protein S21 suppresses a lethal mutation in the Phosphorylated adaptor for RNA export ( Phax ) gene . G3 Genes|Genomes|Genetics 12:9.
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Ilias Georgakopoulos-Soares, Guillermo E. Parada & Martin Hemberg. (2022) Secondary structures in RNA synthesis, splicing and translation. Computational and Structural Biotechnology Journal 20, pages 2871-2884.
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Jun-Xian Du, Gui-Qi Zhu, Jia-Liang Cai, Biao Wang, Yi-Hong Luo, Cong Chen, Cheng-Zhe Cai, Si-Jia Zhang, Jian Zhou, Jia Fan, Wei Zhu & Zhi Dai. (2021) Splicing factors: Insights into their regulatory network in alternative splicing in cancer. Cancer Letters 501, pages 83-104.
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Antoine Cléry, Miroslav Krepl, Cristina K. X. Nguyen, Ahmed Moursy, Hadi Jorjani, Maria Katsantoni, Michal Okoniewski, Nitish Mittal, Mihaela Zavolan, Jiri Sponer & Frédéric H.-T. Allain. (2021) Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing. Nature Communications 12:1.
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Leila Aslani, Mahdiyeh Gholami, Mostafa Mobli, Parviz Ehsanzadeh & Nadia Bertin. (2020) Decreased sink/source ratio enhances hexose transport in the fruits of greenhouse tomatoes: integration of gene expression and biochemical analyses. Physiologia Plantarum 170:1, pages 120-131.
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Katarzyna Taylor & Krzysztof Sobczak. (2020) Intrinsic Regulatory Role of RNA Structural Arrangement in Alternative Splicing Control. International Journal of Molecular Sciences 21:14, pages 5161.
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Zhichao Zhang, Weihuan Cao & Isaac Edery. (2018) The SR protein B52/SRp55 regulates splicing of the period thermosensitive intron and mid-day siesta in Drosophila. Scientific Reports 8:1.
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A. M. Chumakov, E. S. Yuhina, E. I. Frolova, J. E. Kravchenko & S. P. Chumakov. (2016) Expanding the application potential of DNA aptamers by their functionalization. Russian Journal of Bioorganic Chemistry 42:1, pages 1-13.
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Tomas J. Bos, Julia K. Nussbacher, Stefan Aigner & Gene W. Yeo. 2016. RNA Processing. RNA Processing 61 88 .
Todd Bradley, Malcolm E. Cook & Marco Blanchette. (2015) SR proteins control a complex network of RNA-processing events. RNA 21:1, pages 75-92.
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Minna-Liisa Änkö. (2014) Regulation of gene expression programmes by serine–arginine rich splicing factors. Seminars in Cell & Developmental Biology 32, pages 11-21.
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Abdullah Ozer, John M Pagano & John T Lis. (2014) New Technologies Provide Quantum Changes in the Scale, Speed, and Success of SELEX Methods and Aptamer Characterization. Molecular Therapy - Nucleic Acids 3, pages e183.
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Bo Shui, Abdullah Ozer, Warren Zipfel, Nevedita Sahu, Avtar Singh, John T. Lis, Hua Shi & Michael I. Kotlikoff. (2012) RNA aptamers that functionally interact with green fluorescent protein and its derivatives. Nucleic Acids Research 40:5, pages e39-e39.
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Angela N. Brooks, Julie L. Aspden, Anna I. Podgornaia, Donald C. Rio & Steven E. Brenner. (2011) Identification and experimental validation of splicing regulatory elements in Drosophila melanogaster reveals functionally conserved splicing enhancers in metazoans . RNA 17:10, pages 1884-1894.
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Prabhat K. Mallik, Kimi Nishikawa, Albert J. T. Millis & Hua Shi. (2010) Commandeering a biological pathway using aptamer-derived molecular adaptors. Nucleic Acids Research 38:7, pages e93-e93.
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Roberto Marcucci, Maurizio Romano, Fabian Feiguin, Mary A. O'Connell & Francisco E. Baralle. (2009) Dissecting the splicing mechanism of the Drosophila editing enzyme; dADAR. Nucleic Acids Research 37:5, pages 1663-1671.
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Jennifer C. LongJavier F. Caceres. (2008) The SR protein family of splicing factors: master regulators of gene expression. Biochemical Journal 417:1, pages 15-27.
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Seung-min Park, Ji-Young Ahn, Minjoung Jo, Dong-ki Lee, John T. Lis, Harold G. Craighead & Soyoun Kim. (2009) Selection and elution of aptamers using nanoporous sol-gel arrays with integrated microheaters. Lab on a Chip 9:9, pages 1206.
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Joseph A. Jablonski, Emanuele Buratti, Cristiana Stuani & Massimo Caputi. (2008) The Secondary Structure of the Human Immunodeficiency Virus Type 1 Transcript Modulates Viral Splicing and Infectivity. Journal of Virology 82:16, pages 8038-8050.
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Aarti Sevilimedu, Hua Shi & John T. Lis. (2008) TFIIB aptamers inhibit transcription by perturbing PIC formation at distinct stages. Nucleic Acids Research 36:9, pages 3118-3127.
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A. V. Kulbachinskiy. (2007) Methods for selection of aptamers to protein targets. Biochemistry (Moscow) 72:13, pages 1505-1518.
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Sara Olson, Marco Blanchette, Jung Park, Yiannis Savva, Gene W Yeo, Joanne M Yeakley, Donald C Rio & Brenton R Graveley. (2007) A regulator of Dscam mutually exclusive splicing fidelity. Nature Structural & Molecular Biology 14:12, pages 1134-1140.
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Michael Famulok, Jörg S. Hartig & Günter Mayer. (2007) Functional Aptamers and Aptazymes in Biotechnology, Diagnostics, and Therapy. Chemical Reviews 107:9, pages 3715-3743.
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Liudi Yuan, Jing Zhou, Yongqi Wan, Mingkuan Sun, Jie Ding, Fei Dou & Wei Xie. (2007) Identification of RNA binding sequences of Drosophila SR protein DX16. Molecular and Cellular Biochemistry 302:1-2, pages 119-124.
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Marko Djordjevic. (2007) SELEX experiments: New prospects, applications and data analysis in inferring regulatory pathways. Biomolecular Engineering 24:2, pages 179-189.
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Seram Lee, Young Sook Kim, Minjung Jo, Moonsoo Jin, Dong-ki Lee & Soyoun Kim. (2007) Chip-based detection of hepatitis C virus using RNA aptamers that specifically bind to HCV core antigen. Biochemical and Biophysical Research Communications 358:1, pages 47-52.
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Weronika Fic, François Juge, Johann Soret & Jamal Tazi. (2007) Eye Development under the control of SRp55/B52-Mediated Alternative Splicing of eyeless. PLoS ONE 2:2, pages e253.
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Michael Hiller, Rainer Pudimat, Anke Busch & Rolf Backofen. (2006) Using RNA secondary structures to guide sequence motif finding towards single-stranded regions. Nucleic Acids Research 34:17, pages e117-e117.
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Chonglin Yang, Nieng Yan, Jay Parish, Xiaochen Wang, Yigong Shi & Ding Xue. (2006) RNA Aptamers Targeting the Cell Death Inhibitor CED-9 Induce Cell Killing in Caenorhabditis elegans. Journal of Biological Chemistry 281:14, pages 9137-9144.
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Leonie U. Hempel, Christina Rathke, Sunil Jayaramaiah Raja & Renate Renkawitz-Pohl. (2006) In Drosophila , don juan and don juan like encode proteins of the spermatid nucleus and the flagellum and both are regulated at the transcriptional level by the TAF II 80 cannonball while translational repression is achieved by distinct elements . Developmental Dynamics 235:4, pages 1053-1064.
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Marco Blanchette, Richard E. Green, Steven E. Brenner & Donald C. Rio. (2005) Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila . Genes & Development 19:11, pages 1306-1314.
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Franco Pagani & Francisco E. Baralle. (2004) Genomic variants in exons and introns: identifying the splicing spoilers. Nature Reviews Genetics 5:5, pages 389-396.
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Stephanie J. Muh, Ruben H. Hovhannisyan & Russ P. Carstens. (2002) A Non-sequence-specific Double-stranded RNA Structural Element Regulates Splicing of Two Mutually Exclusive Exons of Fibroblast Growth Factor Receptor 2 (FGFR2). Journal of Biological Chemistry 277:51, pages 50143-50154.
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Jun Li, Daron C. Barnard & James G. Patton. (2002) A Unique Glutamic Acid-Lysine (EK) Domain Acts as a Splicing Inhibitor. Journal of Biological Chemistry 277:42, pages 39485-39492.
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Vita Dauksaite & Göran Akusjärvi. (2002) Human Splicing Factor ASF/SF2 Encodes for a Repressor Domain Required for Its Inhibitory Activity on Pre-mRNA Splicing. Journal of Biological Chemistry 277:15, pages 12579-12586.
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Nicole Blümer, Kay Schreiter, Leonie Hempel, Ansgar Santel, Martin Hollmann, Mireille A. Schäfer & Renate Renkawitz-Pohl. (2002) A new translational repression element and unusual transcriptional control regulate expression of don juan during Drosophila spermatogenesis. Mechanisms of Development 110:1-2, pages 97-112.
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Michael Famulok, Michael Blind & Günter Mayer. (2001) Intramers as promising new tools in functional proteomics. Chemistry & Biology 8:10, pages 931-939.
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Wessel P. Dirksen, Xinlan Li, Akila Mayeda, Adrian R. Krainer & Fritz M. Rottman. (2000) Mapping the SF2/ASF Binding Sites in the Bovine Growth Hormone Exonic Splicing Enhancer. Journal of Biological Chemistry 275:37, pages 29170-29177.
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Raphael Lemaire, Annabelle Winne, Madathia Sarkissian & Robert Lafyatis. (1999) SF2 and SRp55 regulation of CD45 exon 4 skipping during T cell activation. European Journal of Immunology 29:3, pages 823-837.
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Henning Ulrich, Joseph E. Ippolito, Oné R. Pagán, Vesna A. Eterovic, Richard M. Hann, Hua Shi, John T. Lis, Mohyee E. Eldefrawi & George P. Hess. (1998) In vitro selection of RNA molecules that displace cocaine from the membrane-bound nicotinic acetylcholine receptor . Proceedings of the National Academy of Sciences 95:24, pages 14051-14056.
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Hong-Xiang Liu, Michael Zhang & Adrian R. Krainer. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes & Development 12:13, pages 1998-2012.
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Gabriele VaraniKiyoshi Nagai. (1998) RNA RECOGNITION BY RNP PROTEINS DURING RNA PROCESSING. Annual Review of Biophysics and Biomolecular Structure 27:1, pages 407-445.
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