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Research Article

Identification of RTF1, a Novel Gene Important for TATA Site Selection by TATA Box-Binding Protein in Saccharomyces cerevisiae

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Pages 4490-4500 | Received 21 Jan 1997, Accepted 28 May 1997, Published online: 29 Mar 2023

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Qing-Fu Cao, Junichi Yamamoto, Tomoyasu Isobe, Shumpei Tateno, Yuki Murase, Yexi Chen, Hiroshi Handa & Yuki Yamaguchi. (2015) Characterization of the Human Transcription Elongation Factor Rtf1: Evidence for Nonoverlapping Functions of Rtf1 and the Paf1 Complex. Molecular and Cellular Biology 35:20, pages 3459-3470.
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Manasi K. Mayekar, Richard G. Gardner & Karen M. Arndt. (2013) The Recruitment of the Saccharomyces cerevisiae Paf1 Complex to Active Genes Requires a Domain of Rtf1 That Directly Interacts with the Spt4-Spt5 Complex. Molecular and Cellular Biology 33:16, pages 3259-3273.
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Lei Zhang, Aaron G. L. Fletcher, Vanessa Cheung, Fred Winston & Laurie A. Stargell. (2008) Spn1 Regulates the Recruitment of Spt6 and the Swi/Snf Complex during Transcriptional Activation by RNA Polymerase II. Molecular and Cellular Biology 28:4, pages 1393-1403.
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Debabrata Biswas, Rinku Dutta-Biswas & David J. Stillman. (2007) Chd1 and yFACT Act in Opposition in Regulating Transcription. Molecular and Cellular Biology 27:18, pages 6279-6287.
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Marcie H. Warner, Kelli L. Roinick & Karen M. Arndt. (2007) Rtf1 Is a Multifunctional Component of the Paf1 Complex That Regulates Gene Expression by Directing Cotranscriptional Histone Modification. Molecular and Cellular Biology 27:17, pages 6103-6115.
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Mary A. Braun, Patrick J. Costa, Elia M. Crisucci & Karen M. Arndt. (2007) Identification of Rkr1, a Nuclear RING Domain Protein with Functional Connections to Chromatin Modification in Saccharomyces cerevisiae. Molecular and Cellular Biology 27:8, pages 2800-2811.
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Armelle Yart, Matthias Gstaiger, Christiane Wirbelauer, Maria Pecnik, Dimitrios Anastasiou, Daniel Hess & Wilhelm Krek. (2005) The HRPT2 Tumor Suppressor Gene Product Parafibromin Associates with Human PAF1 and RNA Polymerase II. Molecular and Cellular Biology 25:12, pages 5052-5060.
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Orit Rozenblatt-Rosen, Christina M. Hughes, Suraj J. Nannepaga, Kalai Selvi Shanmugam, Terry D. Copeland, Tad Guszczynski, James H. Resau & Matthew Meyerson. (2005) The Parafibromin Tumor Suppressor Protein Is Part of a Human Paf1 Complex. Molecular and Cellular Biology 25:2, pages 612-620.
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Mafalda Escobar-Henriques, Bertrand Daignan-Fornier & Martine A. Collart. (2003) The Critical cis-Acting Element Required for IMD2 Feedback Regulation by GDP Is a TATA Box Located 202 Nucleotides Upstream of the Transcription Start Site. Molecular and Cellular Biology 23:17, pages 6267-6278.
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J. Vaughn Spencer & Karen M. Arndt. (2002) A TATA Binding Protein Mutant with Increased Affinity for DNA Directs Transcription from a Reversed TATA Sequence In Vivo. Molecular and Cellular Biology 22:24, pages 8744-8755.
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Nevan J. Krogan, Minkyu Kim, Seong Hoon Ahn, Guoqing Zhong, Michael S. Kobor, Gerard Cagney, Andrew Emili, Ali Shilatifard, Stephen Buratowski & Jack F. Greenblatt. (2002) RNA Polymerase II Elongation Factors of Saccharomyces cerevisiae: a Targeted Proteomics Approach. Molecular and Cellular Biology 22:20, pages 6979-6992.
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Cherie L. Mueller & Judith A. Jaehning. (2002) Ctr9, Rtf1, and Leo1 Are Components of the Paf1/RNA Polymerase II Complex. Molecular and Cellular Biology 22:7, pages 1971-1980.
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Qing Liu, Scott E. Gabriel, Kelli L. Roinick, Robert D. Ward & Karen M. Arndt. (1999) Analysis of TFIIA Function In Vivo: Evidence for a Role in TATA-Binding Protein Recruitment and Gene-Specific Activation. Molecular and Cellular Biology 19:12, pages 8673-8685.
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Margaret K Shirra, Rachel A Kocik, Mitchell A Ellison & Karen M Arndt. (2021) Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae . G3 Genes|Genomes|Genetics 11:11.
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Alex M. Francette, Sarah A. Tripplehorn & Karen M. Arndt. (2021) The Paf1 Complex: A Keystone of Nuclear Regulation Operating at the Interface of Transcription and Chromatin. Journal of Molecular Biology 433:14, pages 166979.
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Jessica M. Lohmar, Olivier Puel, Jeffrey W. Cary & Ana M. Calvo. (2019) The Aspergillus flavus rtfA Gene Regulates Plant and Animal Pathogenesis and Secondary Metabolism . Applied and Environmental Microbiology 85:6.
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Rama Krishna Nimmakayala, Parthasarathy Seshacharyulu, Imayavaramban Lakshmanan, Satyanarayana Rachagani, Seema Chugh, Saswati Karmakar, Sanchita Rauth, Raghupathy Vengoji, Pranita Atri, Geoffrey A. Talmon, Subodh M. Lele, Lynette M. Smith, Ishwor Thapa, Dhundy Bastola, Michel M. Ouellette, Surinder K. Batra & Moorthy P. Ponnusamy. (2018) Cigarette Smoke Induces Stem Cell Features of Pancreatic Cancer Cells via PAF1. Gastroenterology 155:3, pages 892-908.e6.
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Ryan R. Myers, Timothy D. Smith, Sherine F. Elsawa, Olivier Puel, Souraia Tadrist & Ana M. Calvo. (2017) rtfA controls development, secondary metabolism, and virulence in Aspergillus fumigatus. PLOS ONE 12:4, pages e0176702.
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Yinfeng Zhang, Saman M. Najmi & David A. Schneider. (2017) Transcription factors that influence RNA polymerases I and II: To what extent is mechanism of action conserved?. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1860:2, pages 246-255.
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Jessica M. Lohmar, Pamela Y. Harris-Coward, Jeffrey W. Cary, Sourabh Dhingra & Ana M. Calvo. (2016) rtfA, a putative RNA-Pol II transcription elongation factor gene, is necessary for normal morphological and chemical development in Aspergillus flavus. Applied Microbiology and Biotechnology 100:11, pages 5029-5041.
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Brett N. Tomson & Karen M. Arndt. (2013) The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:1, pages 116-126.
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Kristin M Klucevsek, Mary A Braun & Karen M Arndt. (2012) The Paf1 Complex Subunit Rtf1 Buffers Cells Against the Toxic Effects of [ PSI+ ] and Defects in Rkr1-Dependent Protein Quality Control in Saccharomyces cerevisiae . Genetics 191:4, pages 1107-1118.
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Vellaisamy Ramamoorthy, Sourabha Shantappa, Sourabh Dhingra & Ana M. Calvo. (2012) veA-dependent RNA-pol II transcription elongation factor-like protein, RtfA, is associated with secondary metabolism and morphological development in Aspergillus nidulans. Molecular Microbiology 85:4, pages 795-814.
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Christopher G. Amrich, Christopher P. Davis, Walter P. Rogal, Margaret K. Shirra, Annie Heroux, Richard G. Gardner, Karen M. Arndt & Andrew P. VanDemark. (2012) Cdc73 Subunit of Paf1 Complex Contains C-terminal Ras-like Domain That Promotes Association of Paf1 Complex with Chromatin. Journal of Biological Chemistry 287:14, pages 10863-10875.
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David E Levin. (2011) Regulation of Cell Wall Biogenesis in Saccharomyces cerevisiae : The Cell Wall Integrity Signaling Pathway . Genetics 189:4, pages 1145-1175.
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Elia M. Crisucci & Karen M. Arndt. (2011) The Roles of the Paf1 Complex and Associated Histone Modifications in Regulating Gene Expression. Genetics Research International 2011, pages 1-15.
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Justin A. Pruneski, Sarah J. Hainer, Kostadin O. Petrov & Joseph A. Martens. (2011) The Paf1 Complex Represses SER3 Transcription in Saccharomyces cerevisiae by Facilitating Intergenic Transcription-Dependent Nucleosome Occupancy of the SER3 Promoter . Eukaryotic Cell 10:10, pages 1283-1294.
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Melissa Botha, Annette N. Chiang, Patrick G. Needham, Linda L. Stephens, Heinrich C. Hoppe, Simone Külzer, Jude M. Przyborski, Klaus Lingelbach, Peter Wipf, Jeffrey L. Brodsky, Addmore Shonhai & Gregory L. Blatch. (2010) Plasmodium falciparum encodes a single cytosolic type I Hsp40 that functionally interacts with Hsp70 and is upregulated by heat shock. Cell Stress and Chaperones 16:4, pages 389-401.
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Brett N Tomson, Christopher P Davis, Marcie H Warner & Karen M Arndt. (2011) Identification of a Role for Histone H2B Ubiquitylation in Noncoding RNA 3′-End Formation Through Mutational Analysis of Rtf1 in Saccharomyces cerevisiae . Genetics 188:2, pages 273-289.
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Elia M. Crisucci & Karen M. Arndt. (2011) The Paf1 Complex Represses ARG1 Transcription in Saccharomyces cerevisiae by Promoting Histone Modifications . Eukaryotic Cell 10:6, pages 712-723.
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Ki-Young Kim & David E. Levin. (2011) Mpk1 MAPK Association with the Paf1 Complex Blocks Sen1-Mediated Premature Transcription Termination. Cell 144:5, pages 745-756.
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Jessica L. Dermody & Stephen Buratowski. (2010) Leo1 Subunit of the Yeast Paf1 Complex Binds RNA and Contributes to Complex Recruitment*. Journal of Biological Chemistry 285:44, pages 33671-33679.
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Yinfeng Zhang, Archer D. SmithIVIV, Matthew B. Renfrow & David A. Schneider. (2010) The RNA Polymerase-associated Factor 1 Complex (Paf1C) Directly Increases the Elongation Rate of RNA Polymerase I and Is Required for Efficient Regulation of rRNA Synthesis. Journal of Biological Chemistry 285:19, pages 14152-14159.
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Judith A. Jaehning. (2010) The Paf1 complex: Platform or player in RNA polymerase II transcription?. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1799:5-6, pages 379-388.
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Jaehoon Kim, Mohamed Guermah & Robert G. Roeder. (2010) The Human PAF1 Complex Acts in Chromatin Transcription Elongation Both Independently and Cooperatively with SII/TFIIS. Cell 140:4, pages 491-503.
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Li Ding, Maciej Paszkowski-Rogacz, Anja Nitzsche, Mikolaj Michal Slabicki, Anne-Kristin Heninger, Ingrid de Vries, Ralf Kittler, Magno Junqueira, Andrej Shevchenko, Herbert Schulz, Norbert Hubner, Michael Xavier Doss, Agapios Sachinidis, Juergen Hescheler, Roberto Iacone, Konstantinos Anastassiadis, A. Francis Stewart, M. Teresa Pisabarro, Antonio Caldarelli, Ina Poser, Mirko Theis & Frank Buchholz. (2009) A Genome-Scale RNAi Screen for Oct4 Modulators Defines a Role of the Paf1 Complex for Embryonic Stem Cell Identity. Cell Stem Cell 4:5, pages 403-415.
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