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Molecular and Cellular Biology Volume 18, 1998 - Issue 6
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Gene Expression

Functional Mapping of the U3 Small Nucleolar RNA from the Yeast Saccharomyces cerevisiae

Dmitry A. SamarskyDepartment of Biochemistry and Molecular Biology, Program in Molecular and Cellular Biology, University of Massachusetts, Amherst, Massachusetts01003
&
Maurille J. FournierDepartment of Biochemistry and Molecular Biology, Program in Molecular and Cellular Biology, University of Massachusetts, Amherst, Massachusetts01003Correspondence[email protected]
Pages 3431-3444 | Received 22 Dec 1997, Accepted 05 Mar 1998, Published online: 28 Mar 2023

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Sahar Soltanieh, Yvonne N. Osheim, Krasimir Spasov, Christian Trahan, Ann L. Beyer & François Dragon. (2015) DEAD-Box RNA Helicase Dbp4 Is Required for Small-Subunit Processome Formation and Function. Molecular and Cellular Biology 35:5, pages 816-830.
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Andrew Alexander Knox, Kenneth Scott McKeegan, Charles Maurice Debieux, Adele Traynor, Hannah Richardson & Nicholas James Watkins. (2011) A Weak C′ Box Renders U3 snoRNA Levels Dependent on hU3-55K Binding. Molecular and Cellular Biology 31:12, pages 2404-2412.
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A. Cléry, V. Senty-Ségault, F. Leclerc, H. A. Raué & C. Branlant. (2007) Analysis of Sequence and Structural Features That Identify the B/C Motif of U3 Small Nucleolar RNA as the Recognition Site for the Snu13p-Rrp9p Protein Pair. Molecular and Cellular Biology 27:4, pages 1191-1206.
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Sander Granneman, Judith Vogelzangs, Reinhard Lührmann, Walther J. van Venrooij, Ger J. M. Pruijn & Nicholas J. Watkins. (2004) Role of Pre-rRNA Base Pairing and 80S Complex Formation in Subnucleolar Localization of the U3 snoRNP. Molecular and Cellular Biology 24:19, pages 8600-8610.
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Karen A. Wehner, Jennifer E. G. Gallagher & Susan J. Baserga. (2002) Components of an Interdependent Unit within the SSU Processome Regulate and Mediate Its Activity. Molecular and Cellular Biology 22:20, pages 7258-7267.
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Anton V. Borovjagin & Susan A. Gerbi. (2001) Xenopus U3 snoRNA GAC-Box A′ and Box A Sequences Play Distinct Functional Roles in rRNA Processing. Molecular and Cellular Biology 21:18, pages 6210-6221.
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Tommaso Villa, Francesca Ceradini & Irene Bozzoni. (2000) Identification of a Novel Element Required for Processing of Intron-Encoded Box C/D Small Nucleolar RNAs in Saccharomyces cerevisiae. Molecular and Cellular Biology 20:4, pages 1311-1320.
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Wayne Speckmann, Aarthi Narayanan, Rebecca Terns & Michael P. Terns. (1999) Nuclear Retention Elements of U3 Small Nucleolar RNA. Molecular and Cellular Biology 19:12, pages 8412-8421.
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Kishor Sharma & David Tollervey. (1999) Base Pairing between U3 Small Nucleolar RNA and the 5′ End of 18S rRNA Is Required for Pre-rRNA Processing. Molecular and Cellular Biology 19:9, pages 6012-6019.
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Articles from other publishers (34)

Tatiana Dudnakova, Hywel Dunn-Davies, Rosie Peters & David Tollervey. (2018) Mapping targets for small nucleolar RNAs in yeast. Wellcome Open Research 3, pages 120.
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Tatiana Dudnakova, Hywel Dunn-Davies, Rosie Peters & David Tollervey. (2018) Mapping targets for small nucleolar RNAs in yeast. Wellcome Open Research 3, pages 120.
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Benjamin Rothé, Xavier Manival, Nicolas Rolland, Christophe Charron, Véronique Senty-Ségault, Christiane Branlant & Bruno Charpentier. (2017) Implication of the box C/D snoRNP assembly factor Rsa1p in U3 snoRNP assembly. Nucleic Acids Research 45:12, pages 7455-7473.
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Sebastian Canzler, Peter Stadler & Jana Hertel. (2017) Evolution of Fungal U3 snoRNAs: Structural Variation and Introns. Non-Coding RNA 3:1, pages 3.
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Olga PuchtaBotond CsekeHubert CzajaDavid TollerveyGuido SanguinettiGrzegorz Kudla. (2016) Network of epistatic interactions within a yeast snoRNA. Science 352:6287, pages 840-844.
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Ankita Srivastava, Jamaluddin Ahamad, Ashwini Kumar Ray, Devinder Kaur, Alok Bhattacharya & Sudha Bhattacharya. (2014) Analysis of U3 snoRNA and small subunit processome components in the parasitic protist Entamoeba histolytica. Molecular and Biochemical Parasitology 193:2, pages 82-92.
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John L WoolfordJr.Jr. & Susan J Baserga. (2013) Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae . Genetics 195:3, pages 643-681.
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Liman Zhang, Jinzhong Lin & Keqiong Ye. (2013) Structural and functional analysis of the U3 snoRNA binding protein Rrp9. RNA 19:5, pages 701-711.
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W. S. Vincent Yip, Nicholas G. Vincent & Susan J. Baserga. (2013) Ribonucleoproteins in Archaeal Pre-rRNA Processing and Modification. Archaea 2013, pages 1-14.
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Wei Ye, Jingxu Yang, Qingfen Yu, Wei Wang, Joseph Hancy, Ray Luo & Hai-Feng Chen. (2013) Kink turn sRNA folding upon L7Ae binding using molecular dynamics simulations. Physical Chemistry Chemical Physics 15:42, pages 18510.
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Nicholas J. Watkins & Markus T. Bohnsack. (2012) The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA. Wiley Interdisciplinary Reviews: RNA 3:3, pages 397-414.
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Laura M. Dutca, Jennifer E. G. Gallagher & Susan J. Baserga. (2011) The initial U3 snoRNA:pre-rRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing. Nucleic Acids Research 39:12, pages 5164-5180.
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Grzegorz Kudla, Sander Granneman, Daniela Hahn, Jean D. Beggs & David Tollervey. (2011) Cross-linking, ligation, and sequencing of hybrids reveals RNA–RNA interactions in yeast. Proceedings of the National Academy of Sciences 108:24, pages 10010-10015.
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Kathleen R. Phipps, J. Michael Charette & Susan J. Baserga. (2011) The small subunit processome in ribosome biogenesis-progress and prospects. Wiley Interdisciplinary Reviews: RNA 2:1, pages 1-21.
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Na Liu, Qiaojuan Huang, Zhou Hui, Yintong Liang, Chunhong Yu & Lianghu Qu. (2009) Identification, expression and functional analysis of U3 snoRNA genes from Neurospora crassa. Progress in Natural Science 19:2, pages 167-172.
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Sadeq Nabavi, Srinivas Nellimarla & Ross N. Nazar. (2008) Post-transcriptional Regulation of the U3 Small Nucleolar RNA. Journal of Biological Chemistry 283:31, pages 21404-21410.
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Kausik Chakrabarti, Michael Pearson, Leslie Grate, Timothy Sterne-Weiler, Jonathan Deans, John Paul Donohue & Manuel AresJrJr. (2007) Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis. RNA 13:11, pages 1923-1939.
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Dorota Piekna‐Przybylska, Ben Liu & Maurille J. Fournier. 2007. RNA Modification. RNA Modification 317 353 .
Ralph Bax, Harmjan R. Vos, Hendrik A. Raué & Jan C. Vos. (2006) Saccharomyces cerevisiae Sof1p Associates with 35S Pre-rRNA Independent from U3 snoRNA and Rrp5p . Eukaryotic Cell 5:3, pages 427-434.
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Jennifer E.G. Gallagher, David A. Dunbar, Sander Granneman, Brianna M. Mitchell, Yvonne Osheim, Ann L. Beyer & Susan J. Baserga. (2004) RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components. Genes & Development 18:20, pages 2506-2517.
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RAMESH S. YADAVA, ELISABETH M. MAHEN & MARTHA J. FEDOR. (2004) Kinetic analysis of ribozyme–substrate complex formation in yeast. RNA 10:5, pages 863-879.
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Terrie Moore, Yanming Zhang, Marcia O. Fenley & Hong Li. (2004) Molecular Basis of Box C/D RNA-Protein Interactions. Structure 12:5, pages 807-818.
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HELEN C. DOBBYN & RAYMOND T. O’KEEFE. (2004) Analysis of Snu13p mutations reveals differential interactions with the U4 snRNA and U3 snoRNA. RNA 10:2, pages 308-320.
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NATHALIE MARMIER-GOURRIER, ANTOINE CLÉRY, VÉRONIQUE SENTY-SÉGAULT, BRUNO CHARPENTIER, FLORENCE SCHLOTTER, FABRICE LECLERC, RÉGIS FOURNIER & CHRISTIANE BRANLANT. (2003) A structural, phylogenetic, and functional study of 15.5-kD/Snu13 protein binding on U3 small nucleolar RNA. RNA 9:7, pages 821-838.
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Sander Granneman, Ger J.M. Pruijn, Wendy Horstman, Walther J. van Venrooij, Reinhard Lührmann & Nicholas J. Watkins. (2002) The hU3-55K Protein Requires 15.5K Binding to the Box B/C Motif as Well as Flanking RNA Elements for Its Association with the U3 Small Nucleolar RNA in Vitro. Journal of Biological Chemistry 277:50, pages 48490-48500.
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François Dragon, Jennifer E. G. Gallagher, Patricia A. Compagnone-Post, Brianna M. Mitchell, Kara A. Porwancher, Karen A. Wehner, Steven Wormsley, Robert E. Settlage, Jeffrey Shabanowitz, Yvonne Osheim, Ann L. Beyer, Donald F. Hunt & Susan J. Baserga. (2002) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417:6892, pages 967-970.
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Toinette Hartshorne, Wendy Toyofuku & Joseph Hollenbaugh. (2001) Trypanosoma brucei 5′ETS A′-cleavage is directed by 3′-adjacent sequences, but not two U3 snoRNA-binding elements, which are all required for subsequent pre-small subunit rRNA processing events. Journal of Molecular Biology 313:4, pages 733-749.
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S.A. GERBI, A.V. BOROVJAGIN, M. EZROKHI & T.S. LANGE. (2001) Ribosome Biogenesis: Role of Small Nucleolar RNA in Maturation of Eukaryotic rRNA. Cold Spring Harbor Symposia on Quantitative Biology 66:0, pages 575-590.
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Nicholas J Watkins, Véronique Ségault, Bruno Charpentier, Stephanie Nottrott, Patrizia Fabrizio, Angela Bachi, Matthias Wilm, Michael Rosbash, Christiane Branlant & Reinhard Lührmann. (2000) A Common Core RNP Structure Shared between the Small Nucleoar Box C/D RNPs and the Spliceosomal U4 snRNP. Cell 103:3, pages 457-466.
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Anton V. Borovjagin & Susan A. Gerbi. (2000) The spacing between functional cis-elements of U3 snoRNA is critical for rRNA processing. Journal of Molecular Biology 300:1, pages 57-74.
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Aarthi Narayanan, Wayne Speckmann, Rebecca Terns & Michael P. Terns. (1999) Role of the Box C/D Motif in Localization of Small Nucleolar RNAs to Coiled Bodies and Nucleoli. Molecular Biology of the Cell 10:7, pages 2131-2147.
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Dmitry A. Samarsky, Gerardo Ferbeyre, Edouard Bertrand, Robert H. Singer, Robert Cedergren & Maurille J. Fournier. (1999) A small nucleolar RNA:ribozyme hybrid cleaves a nucleolar RNA target in vivo with near-perfect efficiency . Proceedings of the National Academy of Sciences 96:12, pages 6609-6614.
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Anton V Borovjagin & Susan A Gerbi. (1999) U3 small nucleolar RNA is essential for cleavage at sites 1, 2 and 3 in pre-rRNA and determines which rRNA processing pathway is taken in Xenopus oocytes 1 1Edited by D. E. Draper. Journal of Molecular Biology 286:5, pages 1347-1363.
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Thilo Sascha Lange, Michael Ezrokhi, Anton V. Borovjagin, Rafael Rivera-León, Melanie T. North & Susan A. Gerbi. (1998) Nucleolar Localization Elements of Xenopus laevis U3 Small Nucleolar RNA . Molecular Biology of the Cell 9:10, pages 2973-2985.
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