Citations (74)
Keep up to date with the latest research on this topic with citation updates for this article.
Read on this site (11)
Shu-Ching Huang, Alexander C. Ou, Jennie Park, Faye Yu, Brian Yu, Angela Lee, Guang Yang, Anyu Zhou & Edward J. Benz$suffix/text()$suffix/text(). (2012) RBFOX2 Promotes Protein 4.1R Exon 16 Selection via U1 snRNP Recruitment. Molecular and Cellular Biology 32:2, pages 513-526.
Read now
Read now
Hidehito Kuroyanagi, Genta Ohno, Shohei Mitani & Masatoshi Hagiwara. (2007) The Fox-1 Family and SUP-12 Coordinately Regulate Tissue-Specific Alternative Splicing In Vivo. Molecular and Cellular Biology 27:24, pages 8612-8621.
Read now
Read now
Hua-Lin Zhou, Andrew P. Baraniak & Hua Lou. (2007) Role for Fox-1/Fox-2 in Mediating the Neuronal Pathway of Calcitonin/Calcitonin Gene-Related Peptide Alternative RNA Processing. Molecular and Cellular Biology 27:3, pages 830-841.
Read now
Read now
Andrew P. Baraniak, Jing R. Chen & Mariano A. Garcia-Blanco. (2006) Fox-2 Mediates Epithelial Cell-Specific Fibroblast Growth Factor Receptor 2 Exon Choice. Molecular and Cellular Biology 26:4, pages 1209-1222.
Read now
Read now
Jason G. Underwood, Paul L. Boutz, Joseph D. Dougherty, Peter Stoilov & Douglas L. Black. (2005) Homologues of the Caenorhabditis elegans Fox-1 Protein Are Neuronal Splicing Regulators in Mammals. Molecular and Cellular Biology 25:22, pages 10005-10016.
Read now
Read now
Andrew P. Baraniak, Erika L. Lasda, Eric J. Wagner & Mariano A. Garcia-Blanco. (2003) A Stem Structure in Fibroblast Growth Factor Receptor 2 Transcripts Mediates Cell-Type-Specific Splicing by Approximating Intronic Control Elements. Molecular and Cellular Biology 23:24, pages 9327-9337.
Read now
Read now
B. Kate Dredge & Robert B. Darnell. (2003) Nova Regulates GABAA Receptor γ2 Alternative Splicing via a Distal Downstream UCAU-Rich Intronic Splicing Enhancer. Molecular and Cellular Biology 23:13, pages 4687-4700.
Read now
Read now
Vadim Markovtsov, Julia M. Nikolic, Joseph A. Goldman, Christoph W. Turck, Min-Yuan Chou & Douglas L. Black. (2000) Cooperative Assembly of an hnRNP Complex Induced by a Tissue-Specific Homolog of Polypyrimidine Tract Binding Protein. Molecular and Cellular Biology 20:20, pages 7463-7479.
Read now
Read now
Cyril F. Bourgeois, Michel Popielarz, Georges Hildwein & James Stevenin. (1999) Identification of a Bidirectional Splicing Enhancer: Differential Involvement of SR Proteins in 5′ or 3′ Splice Site Activation. Molecular and Cellular Biology 19:11, pages 7347-7356.
Read now
Read now
Justine Southby, Clare Gooding & Christopher W. J. Smith. (1999) Polypyrimidine Tract Binding Protein Functions as a Repressor To Regulate Alternative Splicing of α-Actinin Mutally Exclusive Exons. Molecular and Cellular Biology 19:4, pages 2699-2711.
Read now
Read now
Andrés F. Muro, Massimo Caputi, Rajalakshmi Pariyarath, Franco Pagani, Emanuele Buratti & Francisco E. Baralle. (1999) Regulation of Fibronectin EDA Exon Alternative Splicing: Possible Role of RNA Secondary Structure for Enhancer Display. Molecular and Cellular Biology 19:4, pages 2657-2671.
Read now
Read now
Articles from other publishers (63)
Shannon E Wright & Peter K Todd. (2023) Native functions of short tandem repeats. eLife 12.
Crossref
Crossref
Abir Chakraborty & Adrienne Lesley Edkins. (2021) HSP90 as a regulator of extracellular matrix dynamics. Biochemical Society Transactions 49:6, pages 2611-2625.
Crossref
Crossref
Marco Baralle & Francisco. E. Baralle. (2021) Alternative splicing and liver disease. Annals of Hepatology 26, pages 100534.
Crossref
Crossref
Jessica A. Hensel, Brent D. Heineman, Amy L. Kimble, Evan R. Jellison, Bo Reese & Patrick A. Murphy. (2021) Identification of splice regulators of fibronectin-EIIIA and EIIIB by direct measurement of exon usage in a flow-cytometry based CRISPR screen. Scientific Reports 11:1.
Crossref
Crossref
Claudia Tanja MierkeClaudia Tanja Mierke. 2020. Cellular Mechanics and Biophysics. Cellular Mechanics and Biophysics
509
593
.
Amanda L. Suchanek & Lisa M. Salati. (2015) Construction and evaluation of an adenoviral vector for the liver-specific expression of the serine/arginine-rich splicing factor, SRSF3. Plasmid 82, pages 1-9.
Crossref
Crossref
Francois BordeleauJoseph P. CalifanoYashira L. Negrón AbrilBrooke N. MasonDanielle J. LaValleySandra J. Shin, Robert S. WeissCynthia A. Reinhart-King. (2015) Tissue stiffness regulates serine/arginine-rich protein-mediated splicing of the extra domain B-fibronectin isoform in tumors. Proceedings of the National Academy of Sciences 112:27, pages 8314-8319.
Crossref
Crossref
Ashish Misra, Jianhong Ou, Lihua J. Zhu & Michael R. Green. (2015) Global Promotion of Alternative Internal Exon Usage by mRNA 3′ End Formation Factors. Molecular Cell 58:5, pages 819-831.
Crossref
Crossref
Nicole Lambert, Alex Robertson, Mohini Jangi, Sean McGeary, Phillip A. Sharp & Christopher B. Burge. (2014) RNA Bind-n-Seq: Quantitative Assessment of the Sequence and Structural Binding Specificity of RNA Binding Proteins. Molecular Cell 54:5, pages 887-900.
Crossref
Crossref
Mohini Jangi, Paul L. Boutz, Prakriti Paul & Phillip A. Sharp. (2014) Rbfox2 controls autoregulation in RNA-binding protein networks. Genes & Development 28:6, pages 637-651.
Crossref
Crossref
Michael T Lovci, Dana Ghanem, Henry Marr, Justin Arnold, Sherry Gee, Marilyn Parra, Tiffany Y Liang, Thomas J Stark, Lauren T Gehman, Shawn Hoon, Katlin B Massirer, Gabriel A Pratt, Douglas L Black, Joe W Gray, John G Conboy & Gene W Yeo. (2013) Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nature Structural & Molecular Biology 20:12, pages 1434-1442.
Crossref
Crossref
Megan P. Hall, Roland J. Nagel, W. Samuel Fagg, Lily Shiue, Melissa S. Cline, Rhonda J. Perriman, John Paul Donohue & Manuel AresJr.Jr.. (2013) Quaking and PTB control overlapping splicing regulatory networks during muscle cell differentiation. RNA 19:5, pages 627-638.
Crossref
Crossref
Oskar Hallgren, Johan Malmström, Lars Malmström, Annika Andersson-Sjöland, Marie Wildt, Ellen Tufvesson, Peter Juhasz, György Marko-Varga & Gunilla Westergren-Thorsson. (2012) Splicosomal and serine and arginine-rich splicing factors as targets for TGF-β. Fibrogenesis & Tissue Repair 5:1.
Crossref
Crossref
Younghee Lee, Eric R. Gamazon, Ellen Rebman, Yeunsook Lee, Sanghyuk Lee, M. Eileen Dolan, Nancy J. Cox & Yves A. Lussier. (2012) Variants Affecting Exon Skipping Contribute to Complex Traits. PLoS Genetics 8:10, pages e1002998.
Crossref
Crossref
Lorena Zubović, Marco Baralle & Francisco E. Baralle. (2012) Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands. Nucleic Acids Research 40:13, pages 6255-6269.
Crossref
Crossref
Lauren T. Gehman, Pratap Meera, Peter Stoilov, Lily Shiue, Janelle E. O'Brien, Miriam H. Meisler, Manuel AresJr.Jr., Thomas S. Otis & Douglas L. Black. (2012) The splicing regulator Rbfox2 is required for both cerebellar development and mature motor function. Genes & Development 26:5, pages 445-460.
Crossref
Crossref
Hui Yuan Xiong, Yoseph Barash & Brendan J. Frey. (2011) Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context. Bioinformatics 27:18, pages 2554-2562.
Crossref
Crossref
Kevin M. Flanigan, Diane M. Dunn, Andrew von Niederhausern, Payam Soltanzadeh, Michael T. Howard, Jacinda B. Sampson, Kathryn J. Swoboda, Mark B. Bromberg, Jerry R. Mendell, Laura E. Taylor, Christine B. Anderson, Alan Pestronk, Julaine M. Florence, Anne M. Connolly, Katherine D. Mathews, Brenda Wong, Richard S. Finkel, Carsten G. Bonnemann, John W. Day, Craig McDonald & Robert B. Weiss. (2011) Nonsense mutation-associated Becker muscular dystrophy: interplay between exon definition and splicing regulatory elements within the DMD gene. Human Mutation 32:3, pages 299-308.
Crossref
Crossref
Jarmila Hnilicová, Samira Hozeifi, Eva Dušková, Jaroslav Icha, Tereza Tománková & David Staněk. (2011) Histone Deacetylase Activity Modulates Alternative Splicing. PLoS ONE 6:2, pages e16727.
Crossref
Crossref
Minna-Liisa Änkö, Lucia Morales, Ian Henry, Andreas Beyer & Karla M Neugebauer. (2010) Global analysis reveals SRp20- and SRp75-specific mRNPs in cycling and neural cells. Nature Structural & Molecular Biology 17:8, pages 962-970.
Crossref
Crossref
Yoseph Barash, John A. Calarco, Weijun Gao, Qun Pan, Xinchen Wang, Ofer Shai, Benjamin J. Blencowe & Brendan J. Frey. (2010) Deciphering the splicing code. Nature 465:7294, pages 53-59.
Crossref
Crossref
Annapina Russo, Gabriella Siciliano, Morena Catillo, Chiara Giangrande, Angela Amoresano, Pietro Pucci, Concetta Pietropaolo & Giulia Russo. (2010) hnRNP H1 and intronic G runs in the splicing control of the human rpL3 gene. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1799:5-6, pages 419-428.
Crossref
Crossref
Puneet Seth & Heather N. Yeowell. (2010) Fox-2 protein regulates the alternative splicing of scleroderma-associated lysyl hydroxylase 2 messenger RNA. Arthritis & Rheumatism 62:4, pages 1167-1175.
Crossref
Crossref
Andrey Damianov & Douglas L. Black. (2010) Autoregulation of Fox protein expression to produce dominant negative splicing factors. RNA 16:2, pages 405-416.
Crossref
Crossref
Hidehito Kuroyanagi. (2009) Fox-1 family of RNA-binding proteins. Cellular and Molecular Life Sciences 66:24, pages 3895-3907.
Crossref
Crossref
Chaolin Zhang, Zuo Zhang, John Castle, Shuying Sun, Jason Johnson, Adrian R. Krainer & Michael Q. Zhang. (2008) Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. Genes & Development 22:18, pages 2550-2563.
Crossref
Crossref
ES White, FE Baralle & AF Muro. (2008) New insights into form and function of fibronectin splice variants. The Journal of Pathology 216:1, pages 1-14.
Crossref
Crossref
Zefeng Wang & Christopher B. Burge. (2008) Splicing regulation: From a parts list of regulatory elements to an integrated splicing code. RNA 14:5, pages 802-813.
Crossref
Crossref
Guang Yang, Shu-Ching HuangJane Y. WuEdward J. BenzJrJr. (2008) Regulated Fox-2 isoform expression mediates protein 4.1R splicing during erythroid differentiation. Blood 111:1, pages 392-401.
Crossref
Crossref
Benjamin B Andken, In Lim, Gary Benson, John J Vincent, Matthew T Ferenc, Bianca Heinrich, Larissa A Jarzylo, Heng-Ye Man & James O Deshler. (2007) 3'-UTR SIRF: A database for identifying clusters of short interspersed repeats in 3' untranslated regions. BMC Bioinformatics 8:1.
Crossref
Crossref
Gene W Yeo, Xiangdong Xu, Tiffany Y Liang, Alysson R Muotri, Christian T Carson, Nicole G Coufal & Fred H Gage. (2007) Alternative Splicing Events Identified in Human Embryonic Stem Cells and Neural Progenitors. PLoS Computational Biology 3:10, pages e196.
Crossref
Crossref
Julian P. Venables. (2007) Downstream intronic splicing enhancers. FEBS Letters 581:22, pages 4127-4131.
Crossref
Crossref
Rodger B. Voelker & J. Andrew Berglund. (2007) A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing. Genome Research 17:7, pages 1023-1033.
Crossref
Crossref
Gene W Yeo, Eric L. Van Nostrand & Tiffany Y Liang. (2007) Discovery and Analysis of Evolutionarily Conserved Intronic Splicing Regulatory Elements. PLoS Genetics 3:5, pages e85.
Crossref
Crossref
Fei Han, James R. Gilbert, Gerald Harrison, Christopher S. Adams, Theresa Freeman, Zhuliang Tao, Raihana Zaka, Hongyan Liang, Charlene Williams, Rocky S. Tuan, Pamela A. Norton & Noreen J. Hickok. (2007) Transforming growth factor-β1 regulates fibronectin isoform expression and splicing factor SRp40 expression during ATDC5 chondrogenic maturation. Experimental Cell Research 313:8, pages 1518-1532.
Crossref
Crossref
Ivana Vukusic, Sushma Nagaraja Grellscheid & Thomas Wiehe. (2007) Applying genetic programming to the prediction of alternative mRNA splice variants. Genomics 89:4, pages 471-479.
Crossref
Crossref
Kristoffer Larsen, Johan Malmström, Marie Wildt, Camilla Dahlqvist, Lennart Hansson, György Marko-Varga, Leif Bjermer, Agneta Scheja & Gunilla Westergren-Thorsson. (2006) Functional and phenotypical comparison of myofibroblasts derived from biopsies and bronchoalveolar lavage in mild asthma and scleroderma. Respiratory Research 7:1.
Crossref
Crossref
Jennifer L Kabat, Sergio Barberan-Soler, Paul McKenna, Hiram Clawson, Tracy Farrer & Alan M Zahler. (2006) Intronic Alternative Splicing Regulators Identified by Comparative Genomics in Nematodes. PLoS Computational Biology 2:7, pages e86.
Crossref
Crossref
Julie L. Ponthier, Christina Schluepen, Weiguo Chen, Robert A. Lersch, Sherry L. Gee, Victor C. Hou, Annie J. Lo, Sarah A. Short, Joel A. Chasis, John C. Winkelmann & John G. Conboy. (2006) Fox-2 Splicing Factor Binds to a Conserved Intron Motif to Promote Inclusion of Protein 4.1R Alternative Exon 16. Journal of Biological Chemistry 281:18, pages 12468-12474.
Crossref
Crossref
Charles W Sugnet, Karpagam Srinivasan, Tyson A Clark, Georgeann O'Brien, Melissa S Cline, Hui Wang, Alan Williams, David Kulp, John E Blume, David Haussler & Manuel Ares. (2006) Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays. PLoS Computational Biology 2:1, pages e4.
Crossref
Crossref
Sigrid D Auweter, Rudi Fasan, Luc Reymond, Jason G Underwood, Douglas L Black, Stefan Pitsch & Frédéric H-T Allain. (2005) Molecular basis of RNA recognition by the human alternative splicing factor Fox-1. The EMBO Journal 25:1, pages 163-173.
Crossref
Crossref
Ha-Sheng Li-Korotky, Patricia A. Hebda, Lori A. Kelly, Chia-Yee Lo & Joseph E. Dohar. (2006) Identification of a pre-mRNA splicing factor, arginine/serine-rich 3 (Sfrs3), and its co-expression with fibronectin in fetal and postnatal rabbit airway mucosal and skin wounds. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1762:1, pages 34-45.
Crossref
Crossref
Jim R. Hughes, Jan-Fang Cheng, Nicki Ventress, Shyam Prabhakar, Kevin Clark, Eduardo Anguita, Marco De Gobbi, Pieter de Jong, Eddy Rubin & Douglas R. Higgs. (2005) Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences. Proceedings of the National Academy of Sciences 102:28, pages 9830-9835.
Crossref
Crossref
Doris M. Kupfer, Scott D. Drabenstot, Kent L. Buchanan, Hongshing Lai, Hua Zhu, David W. Dyer, Bruce A. Roe & Juneann W. Murphy. (2004) Introns and Splicing Elements of Five Diverse Fungi. Eukaryotic Cell 3:5, pages 1088-1100.
Crossref
Crossref
Matías Blaustein, Federico Pelisch, Omar A. Coso, Mina J. Bissell, Alberto R. Kornblihtt & Anabella Srebrow. (2004) Mammary Epithelial-Mesenchymal Interaction Regulates Fibronectin Alternative Splicing via Phosphatidylinositol 3-Kinase. Journal of Biological Chemistry 279:20, pages 21029-21037.
Crossref
Crossref
Anil K. Chauhan, Alessandra Iaconcig, Francisco E. Baralle & Andrés F. Muro. (2004) Alternative splicing of fibronectin: a mouse model demonstrates the identity of in vitro and in vivo systems and the processing autonomy of regulated exons in adult mice. Gene 324, pages 55-63.
Crossref
Crossref
Cyril F Bourgeois, Fabrice Lejeune & James Stévenin. 2004.
37
88
.
Matthew Flanagan, Hongyan Liang & Pamela A. Norton. (2003) Alternative splicing of fibronectin mRNAs in chondrosarcoma cells: Role of far upstream intron sequences. Journal of Cellular Biochemistry 90:4, pages 709-718.
Crossref
Crossref
Manuel de la Mata, Claudio R Alonso, Sebastián Kadener, Juan P Fededa, Matı́as Blaustein, Federico Pelisch, Paula Cramer, David Bentley & Alberto R Kornblihtt. (2003) A Slow RNA Polymerase II Affects Alternative Splicing In Vivo. Molecular Cell 12:2, pages 525-532.
Crossref
Crossref
Andrés F. Muro, Anil K. Chauhan, Srecko Gajovic, Alessandra Iaconcig, Fabiola Porro, Giorgio Stanta & Francisco E. Baralle. (2003) Regulated splicing of the fibronectin EDA exon is essential for proper skin wound healing and normal lifespan. Journal of Cell Biology 162:1, pages 149-160.
Crossref
Crossref
Rotem Sorek & Gil Ast. (2003) Intronic Sequences Flanking Alternatively Spliced Exons Are Conserved Between Human and Mouse. Genome Research 13:7, pages 1631-1637.
Crossref
Crossref
Douglas L. Black. (2003) Mechanisms of Alternative Pre-Messenger RNA Splicing. Annual Review of Biochemistry 72:1, pages 291-336.
Crossref
Crossref
Franco Pagani, Cristiana Stuani, Elisabetta Zuccato, Alberto R. Kornblihtt & Francisco E. Baralle. (2003) Promoter Architecture Modulates CFTR Exon 9 Skipping. Journal of Biological Chemistry 278:3, pages 1511-1517.
Crossref
Crossref
A.E. Parker, J. Boutell, A. Carr & R.A. Maciewicz. (2002) Novel cartilage-specific splice variants of fibronectin. Osteoarthritis and Cartilage 10:7, pages 528-534.
Crossref
Crossref
Anabella Srebrow, Matı́as Blaustein & Alberto R Kornblihtt. (2002) Regulation of fibronectin alternative splicing by a basement membrane-like extracellular matrix. FEBS Letters 514:2-3, pages 285-289.
Crossref
Crossref
Mireille DeguillienShu-Ching HuangMadeleine MorinièreNatacha DreumontEdward J. BenzJrJrFaouzi Baklouti. (2001) Multiple cis elements regulate an alternative splicing event at 4.1R pre-mRNA during erythroid differentiation. Blood 98:13, pages 3809-3816.
Crossref
Crossref
Hua Lou & Robert F. Gagel. (2001) Alternative Ribonucleic Acid Processing in Endocrine Systems. Endocrine Reviews 22:2, pages 205-225.
Crossref
Crossref
Thomas Genetta, Hiroko Morisaki, Takayuki Morisaki & Edward W. Holmes. (2001) A Novel Bipartite Intronic Splicing Enhancer Promotes the Inclusion of a Mini-exon in the AMP Deaminase 1 Gene. Journal of Biological Chemistry 276:27, pages 25589-25597.
Crossref
Crossref
Magnus Molin & Göran Akusjärvi. (2000) Overexpression of Essential Splicing Factor ASF/SF2 Blocks the Temporal Shift in Adenovirus Pre-mRNA Splicing and Reduces Virus Progeny Formation. Journal of Virology 74:19, pages 9002-9009.
Crossref
Crossref
Neng-hua Guo & Sachiyo Kawamoto. (2000) An Intronic Downstream Enhancer Promotes 3′ Splice Site Usage of a Neural Cell-specific Exon. Journal of Biological Chemistry 275:43, pages 33641-33649.
Crossref
Crossref
Oliver Stoss, Peter Stoilov, Annette M. Hartmann, Oliver Nayler & Stefan Stamm. (1999) The in vivo minigene approach to analyze tissue-specific splicing. Brain Research Protocols 4:3, pages 383-394.
Crossref
Crossref
Yung-Feng Liao, Kenneth G. Wieder, Jeanne M. Classen & Livingston Van De Water. (1999) Identification of Two Amino Acids within the EIIIA (ED-A) Segment of Fibronectin Constituting the Epitope for Two Function-blocking Monoclonal Antibodies. Journal of Biological Chemistry 274:25, pages 17876-17884.
Crossref
Crossref
Bernhard Aigner, Konstanze Pambalk, Ursula Reichart, Urban Besenfelder, Zsuzsanna Bosze, Matthias Renner, Walter H. Günzburg, Eckhard Wolf, Mathias Müller & Gottfried Brem. (1999) Species-Specific Alternative Splicing of Transgenic RNA in the Mammary Glands of Pigs, Rabbits, and Mice. Biochemical and Biophysical Research Communications 257:3, pages 843-850.
Crossref
Crossref