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DNA Dynamics and Chromosome Structure

Target Specificity of the Endonuclease from the Xenopus laevis Non-Long Terminal Repeat Retrotransposon, Tx1L

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Pages 1219-1226 | Received 14 Sep 1999, Accepted 15 Nov 1999, Published online: 28 Mar 2023

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Shawn M. Christensen & Thomas H. Eickbush. (2005) R2 Target-Primed Reverse Transcription: Ordered Cleavage and Polymerization Steps by Protein Subunits Asymmetrically Bound to the Target DNA. Molecular and Cellular Biology 25:15, pages 6617-6628.
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Wei Wei, Nicolas Gilbert, Siew Loon Ooi, Joseph F. Lawler, Eric M. Ostertag, Haig H. Kazazian, Jef D. Boeke & John V. Moran. (2001) Human L1 Retrotransposition: cisPreference versus trans Complementation. Molecular and Cellular Biology 21:4, pages 1429-1439.
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Tomohiro Anzai, Hidekazu Takahashi & Haruhiko Fujiwara. (2001) Sequence-Specific Recognition and Cleavage of Telomeric Repeat (TTAGG) by Endonuclease of Non-Long Terminal Repeat Retrotransposon TRAS1. Molecular and Cellular Biology 21:1, pages 100-108.
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Joana Moura Gama, Adriana Ludwig, Camilla Borges Gazolla, Dieval Guizelini, Shirlei Maria Recco-Pimentel & Daniel Pacheco Bruschi. (2022) A genomic survey of LINE elements in Pipidae aquatic frogs shed light on Rex-elements evolution in these genomes. Molecular Phylogenetics and Evolution 168, pages 107393.
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Kenji K. Kojima. (2022) Diversity and Evolution of DNA Transposons Targeting Multicopy Small RNA Genes from Actinopterygian Fish. Biology 11:2, pages 166.
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Jonathan N. WellsCédric Feschotte. (2020) A Field Guide to Eukaryotic Transposable Elements. Annual Review of Genetics 54:1, pages 539-561.
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Kenji K. Kojima. (2015) A New Class of SINEs with snRNA Gene-Derived Heads. Genome Biology and Evolution 7:6, pages 1702-1712.
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Haruhiko Fujiwara. 2015. Mobile DNA III. Mobile DNA III 1147 1163 .
Haruhiko Fujiwara. (2015) Site-specific non-LTR retrotransposons. Microbiology Spectrum 3:2.
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Stuart F. J. Le Grice & Marcin Nowotny. 2014. Nucleic Acid Polymerases. Nucleic Acid Polymerases 189 214 .
Kostas Repanas, Gloria Fuentes, Serge X. Cohen, Alexandre M. J. J. Bonvin & Anastassis Perrakis. (2009) Insights into the DNA cleavage mechanism of human LINE-1 retrotransposon endonuclease. Proteins: Structure, Function, and Bioinformatics 74:4, pages 917-928.
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Thomas H. Eickbush & Varuni K. Jamburuthugoda. (2008) The diversity of retrotransposons and the properties of their reverse transcriptases. Virus Research 134:1-2, pages 221-234.
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Thomas H. Eickbush & Harmit S. Malik. 2007. Mobile DNA II. Mobile DNA II 1111 1144 .
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Kostas Repanas, Nora Zingler, Liliana E. Layer, Gerald G. Schumann, Anastassis Perrakis & Oliver Weichenrieder. (2007) Determinants for DNA target structure selectivity of the human LINE-1 retrotransposon endonuclease. Nucleic Acids Research 35:14, pages 4914-4926.
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Nobuo Maita, Hideyuki Aoyagi, Mizuko Osanai, Masahiro Shirakawa & Haruhiko Fujiwara. (2007) Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies. Nucleic Acids Research 35:12, pages 3918-3927.
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Prabhat K. Mandal, Kamal Rawal, Ram Ramaswamy, Alok Bhattacharya & Sudha Bhattacharya. (2006) Identification of insertion hot spots for non-LTR retrotransposons: computational and biochemical application to Entamoeba histolytica. Nucleic Acids Research 34:20, pages 5752-5763.
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Kenji K. Kojima & Haruhiko Fujiwara. (2005) Long-Term Inheritance of the 28S rDNA-Specific Retrotransposon R2. Molecular Biology and Evolution 22:11, pages 2157-2165.
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Haruhiko Fujiwara, Mizuko Osanai, Takumi Matsumoto & Kenji K. Kojima. (2005) Telomere-specific non-LTR retrotransposons and telomere maintenance in the silkworm, Bombyx mori. Chromosome Research 13:5, pages 455-467.
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Shawn Christensen & Thomas H. Eickbush. (2004) Footprint of the Retrotransposon R2Bm Protein on its Target Site Before and After Cleavage. Journal of Molecular Biology 336:5, pages 1035-1045.
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Prabhat K. Mandal, Anindya Bagchi, Alok Bhattacharya & Sudha Bhattacharya. (2004) An Entamoeba histolytica LINE/SINE Pair Inserts at Common Target Sites Cleaved by the Restriction Enzyme-Like LINE-Encoded Endonuclease . Eukaryotic Cell 3:1, pages 170-179.
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Ning Jiang, Zhirong Bao, Svetlana Temnykh, Zhukuan Cheng, Jiming Jiang, Rod A Wing, Susan R McCouch & Susan R Wessler. (2002) Dasheng : A Recently Amplified Nonautonomous Long Terminal Repeat Element That Is a Major Component of Pericentromeric Regions in Rice . Genetics 161:3, pages 1293-1305.
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Marcella A. McClure, Eric Donaldson & Seanna Corro. (2002) Potential Multiple Endonuclease Functions and a Ribonuclease H Encoded in Retroposon Genomes. Virology 296:1, pages 147-158.
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Hidekazu Takahashi & Haruhiko Fujiwara. (2002) Transplantation of target site specificity by swapping the endonuclease domains of two LINEs. The EMBO Journal 21:3, pages 408-417.
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Yoko Kubo, Satoshi Okazaki, Tomohiro Anzai & Haruhiko Fujiwara. (2001) Structural and Phylogenetic Analysis of TRAS, Telomeric Repeat-Specific Non-LTR Retrotransposon Families in Lepidopteran Insects. Molecular Biology and Evolution 18:5, pages 848-857.
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