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Gene Expression

Identification of a Novel Element Required for Processing of Intron-Encoded Box C/D Small Nucleolar RNAs in Saccharomyces cerevisiae

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Pages 1311-1320 | Received 17 Sep 1999, Accepted 17 Nov 1999, Published online: 28 Mar 2023

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Sarah F. Webster & Homa Ghalei. (2023) Maturation of small nucleolar RNAs: from production to function. RNA Biology 20:1, pages 715-736.
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Patricia Richard, Arnold M. Kiss, Xavier Darzacq & Tamás Kiss. (2006) Cotranscriptional Recognition of Human Intronic Box H/ACA snoRNAs Occurs in a Splicing-Independent Manner. Molecular and Cellular Biology 26:7, pages 2540-2549.
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Christophe Dez, Jacqueline Noaillac-Depeyre, Michèle Caizergues-Ferrer & Yves Henry. (2002) Naf1p, an Essential Nucleoplasmic Factor Specifically Required for Accumulation of Box H/ACA Small Nucleolar RNPs. Molecular and Cellular Biology 22:20, pages 7053-7065.
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Mariangela Morlando, Paolo Greco, Bernhard Dichtl, Alessandro Fatica, Walter Keller & Irene Bozzoni. (2002) Functional Analysis of Yeast snoRNA and snRNA 3′-End Formation Mediated by Uncoupling of Cleavage and Polyadenylation. Molecular and Cellular Biology 22:5, pages 1379-1389.
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Xavier Darzacq & Tamás Kiss. (2000) Processing of Intron-Encoded Box C/D Small Nucleolar RNAs Lacking a 5′,3′-Terminal Stem Structure. Molecular and Cellular Biology 20:13, pages 4522-4531.
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Yanru Liu, Samuel DeMario, Kevin He, Michelle R. Gibbs, Keaton W. Barr & Guillaume F. Chanfreau. (2022) Splicing inactivation generates hybrid mRNA-snoRNA transcripts targeted by cytoplasmic RNA decay. Proceedings of the National Academy of Sciences 119:31.
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Nithyananda Thorenoor & Ondrej Slaby. (2014) Small nucleolar RNAs functioning and potential roles in cancer. Tumor Biology 36:1, pages 41-53.
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Inna Shcherbakova, Aaron A. Hoskins, Larry J. Friedman, Victor Serebrov, Ivan R. CorrêaJr.Jr., Ming-Qun Xu, Jeff Gelles & Melissa J. Moore. (2013) Alternative Spliceosome Assembly Pathways Revealed by Single-Molecule Fluorescence Microscopy. Cell Reports 5:1, pages 151-165.
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Gal Haimovich, Daniel A. Medina, Sebastien Z. Causse, Manuel Garber, Gonzalo Millán-Zambrano, Oren Barkai, Sebastián Chávez, José E. Pérez-Ortín, Xavier Darzacq & Mordechai Choder. (2013) Gene Expression Is Circular: Factors for mRNA Degradation Also Foster mRNA Synthesis. Cell 153:5, pages 1000-1011.
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Kasper L. Andersen & Henrik Nielsen. (2012) Experimental identification and analysis of macronuclear non-coding RNAs from the ciliate Tetrahymena thermophila. Nucleic Acids Research 40:3, pages 1267-1281.
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Michal Krzyszton, Monika Zakrzewska-Placzek, Michal Koper & Joanna Kufel. 2012. Eukaryotic RNases and their Partners in RNA Degradation and Biogenesis, Part A. Eukaryotic RNases and their Partners in RNA Degradation and Biogenesis, Part A 131 163 .
Michael C. Marvin, Sandra Clauder-Münster, Scott C. Walker, Ali Sarkeshik, John R. YatesIIIIII, Lars M. Steinmetz & David R. Engelke. (2011) Accumulation of noncoding RNA due to an RNase P defect in Saccharomyces cerevisiae . RNA 17:8, pages 1441-1450.
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Scott C. Walker, Michael C. Marvin & David R. Engelke. 2010. Ribonuclease P. Ribonuclease P 173 202 .
Satu Nahkuri, Ryan J. Taft, Darren J. Korbie & John S. Mattick. (2008) Molecular Evolution of the HBII-52 snoRNA Cluster. Journal of Molecular Biology 381:4, pages 810-815.
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Daniel J. CoughlinJeffrey A. Pleiss, Scott C. WalkerGregg B. Whitworth & David R. Engelke. (2008) Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs. Proceedings of the National Academy of Sciences 105:34, pages 12218-12223.
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Jonathan A. Stead, Joe L. Costello, Michaela J. Livingstone & Phil Mitchell. (2007) The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein. Nucleic Acids Research 35:16, pages 5556-5567.
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Sara Vincenti, Valentina De Chiara, Irene Bozzoni & Carlo Presutti. (2007) The position of yeast snoRNA-coding regions within host introns is essential for their biosynthesis and for efficient splicing of the host pre-mRNA. RNA 13:1, pages 138-150.
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Stefanie Pöggeler. 2005. Genes and Genomics. Genes and Genomics 71 92 .
Valeria de Turris, Gianpiero Di Leva, Sara Caldarola, Fabrizio Loreni, Francesco Amaldi & Irene Bozzoni. (2004) TOP Promoter Elements Control the Relative Ratio of Intron-encoded snoRNA Versus Spliced mRNA Biosynthesis. Journal of Molecular Biology 344:2, pages 383-394.
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Mariangela Morlando, Monica Ballarino, Paolo Greco, Elisa Caffarelli, Bernhard Dichtl & Irene Bozzoni. (2004) Coupling between snoRNP assembly and 3′ processing controls box C/D snoRNA biosynthesis in yeast. The EMBO Journal 23:12, pages 2392-2401.
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Hui Zhou, Jin Zhao, Chuan-He Yu, Qing-Jun Luo, Yue-Qin Chen, Yu Xiao & Liang-Hu Qu. (2004) Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. Gene 327:1, pages 99-105.
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NATHALIE MARMIER-GOURRIER, ANTOINE CLÉRY, VÉRONIQUE SENTY-SÉGAULT, BRUNO CHARPENTIER, FLORENCE SCHLOTTER, FABRICE LECLERC, RÉGIS FOURNIER & CHRISTIANE BRANLANT. (2003) A structural, phylogenetic, and functional study of 15.5-kD/Snu13 protein binding on U3 small nucleolar RNA. RNA 9:7, pages 821-838.
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Tetsuro Hirose, Mei-Di Shu & Joan A. Steitz. (2003) Splicing-Dependent and -Independent Modes of Assembly for Intron-Encoded Box C/D snoRNPs in Mammalian Cells. Molecular Cell 12:1, pages 113-123.
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Arina D. Omer, Sonia Ziesche, Wayne A. Decatur, Maurille J. Fournier & Patrick P. Dennis. (2003) RNA-modifying machines in archaea. Molecular Microbiology 48:3, pages 617-629.
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Jean-Pierre Bachellerie, Jérôme Cavaillé & Alexander Hüttenhofer. (2002) The expanding snoRNA world. Biochimie 84:8, pages 775-790.
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Witold Filipowicz & Vanda Pogačić. (2002) Biogenesis of small nucleolar ribonucleoproteins. Current Opinion in Cell Biology 14:3, pages 319-327.
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Daniela Filippini, Fabiana Renzi, Irene Bozzoni & Elisa Caffarelli. (2001) U86, a Novel snoRNA with an Unprecedented Gene Organization in Yeast. Biochemical and Biophysical Research Communications 288:1, pages 16-21.
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Jérôme Cavaillé, Patrice Vitali, Eugenia Basyuk, Alexander Hüttenhofer & Jean-Pierre Bachellerie. (2001) A Novel Brain-specific Box C/D Small Nucleolar RNA Processed from Tandemly Repeated Introns of a Noncoding RNA Gene in Rats. Journal of Biological Chemistry 276:28, pages 26374-26383.
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