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Transcriptional Regulation

Studies of Nematode TFIIE Function Reveal a Link between Ser-5 Phosphorylation of RNA Polymerase II and the Transition from Transcription Initiation to Elongation

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Pages 1-15 | Received 30 May 2000, Accepted 13 Oct 2000, Published online: 28 Mar 2023

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Mary C. Thomas & Cheng-Ming Chiang. (2006) The General Transcription Machinery and General Cofactors. Critical Reviews in Biochemistry and Molecular Biology 41:3, pages 105-178.
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Tomomichi Watanabe, Kazuhiro Hayashi, Aki Tanaka, Tadashi Furumoto, Fumio Hanaoka & Yoshiaki Ohkuma. (2003) The Carboxy Terminus of the Small Subunit of TFIIE Regulates the Transition from Transcription Initiation to Elongation by RNA Polymerase II. Molecular and Cellular Biology 23:8, pages 2914-2926.
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Naoyuki Fujita, Sugiko Watanabe, Takaya Ichimura, Yoshiaki Ohkuma, Tsutomu Chiba, Hideyuki Saya & Mitsuyoshi Nakao. (2003) MCAF Mediates MBD1-Dependent Transcriptional Repression. Molecular and Cellular Biology 23:8, pages 2834-2843.
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Madjid Benkoussa, Céline Brand, Marie-Hélène Delmotte, Pierre Formstecher & Philippe Lefebvre. (2002) Retinoic Acid Receptors Inhibit AP1 Activation by Regulating Extracellular Signal-Regulated Kinase and CBP Recruitment to an AP1-Responsive Promoter. Molecular and Cellular Biology 22:13, pages 4522-4534.
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Articles from other publishers (24)

Masahiko Okuda, Yasuo Tsunaka & Yoshifumi Nishimura. (2022) Dynamic structures of intrinsically disordered proteins related to the general transcription factor TFIIH, nucleosomes, and histone chaperones. Biophysical Reviews 14:6, pages 1449-1472.
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Karen L. Thijssen, Melanie van der Woude, Carlota Davó-Martínez, Dick H. W. Dekkers, Mariangela Sabatella, Jeroen A. A. Demmers, Wim Vermeulen & Hannes Lans. (2021) C. elegans TFIIH subunit GTF-2H5/TTDA is a non-essential transcription factor indispensable for DNA repair. Communications Biology 4:1.
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Sonia Zicari, Adhikarimayum Lakhikumar Sharma, Geetaram Sahu, Larisa Dubrovsky, Lin Sun, Han Yue, Tejaswi Jada, Alex Ochem, Gary Simon, Michael Bukrinsky & Mudit Tyagi. (2020) DNA dependent protein kinase (DNA-PK) enhances HIV transcription by promoting RNA polymerase II activity and recruitment of transcription machinery at HIV LTR. Oncotarget 11:7, pages 699-726.
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Leah A. Gates, Jiejun Shi, Aarti D. Rohira, Qin Feng, Bokai Zhu, Mark T. Bedford, Cari A. Sagum, Sung Yun Jung, Jun Qin, Ming-Jer Tsai, Sophia Y. Tsai, Wei Li, Charles E. Foulds & Bert W. O'Malley. (2017) Acetylation on histone H3 lysine 9 mediates a switch from transcription initiation to elongation. Journal of Biological Chemistry 292:35, pages 14456-14472.
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Aki Tanaka, Yusuke Akimoto, Satoko Kobayashi, Koji Hisatake, Fumio Hanaoka & Yoshiaki Ohkuma. (2015) Association of the winged helix motif of the TFIIEα subunit of TFIIE with either the TFIIEβ subunit or TFIIB distinguishes its functions in transcription. Genes to Cells 20:3, pages 203-216.
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Yusuke Akimoto, Seiji Yamamoto, Satoshi Iida, Yutaka Hirose, Aki Tanaka, Fumio Hanaoka & Yoshiaki Ohkuma. (2014) Transcription cofactor PC4 plays essential roles in collaboration with the small subunit of general transcription factor TFIIE. Genes to Cells 19:12, pages 879-890.
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Shilpi Tyagi, Alex Ochem & Mudit Tyagi. (2011) DNA-dependent protein kinase interacts functionally with the RNA polymerase II complex recruited at the human immunodeficiency virus (HIV) long terminal repeat and plays an important role in HIV gene expression. Journal of General Virology 92:7, pages 1710-1720.
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Aki Tanaka, Tomomichi Watanabe, Yukari Iida, Fumio Hanaoka & Yoshiaki Ohkuma. (2009) Central forkhead domain of human TFIIEβ plays a primary role in binding double-stranded DNA at transcription initiation. Genes to Cells 14:3, pages 395-405.
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Masahiko Okuda, Aki Tanaka, Manami Satoh, Shoko Mizuta, Manabu Takazawa, Yoshiaki Ohkuma & Yoshifumi Nishimura. (2008) Structural insight into the TFIIE–TFIIH interaction: TFIIE and p53 share the binding region on TFIIH. The EMBO Journal 27:7, pages 1161-1171.
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Paola Di LelloLisa M. Miller Jenkins, Caroline MasChantal LangloisElena MalitskayaAmélie Fradet-Turcotte, Jacques Archambault, Pascale LegaultJames G. Omichinski. (2008) p53 and TFIIEα share a common binding site on the Tfb1/p62 subunit of TFIIH. Proceedings of the National Academy of Sciences 105:1, pages 106-111.
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Yutaka Hirose & Yoshiaki Ohkuma. (2007) Phosphorylation of the C-terminal Domain of RNA Polymerase II Plays Central Roles in the Integrated Events of Eucaryotic Gene Expression. The Journal of Biochemistry 141:5, pages 601-608.
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Kristi L. Penheiter & Judith A. Jaehning. 2006. Gene Expression and Regulation. Gene Expression and Regulation 49 66 .
Anton Meinhart, Tomislav Kamenski, Sabine Hoeppner, Sonja Baumli & Patrick Cramer. (2005) A structural perspective of CTD function. Genes & Development 19:12, pages 1401-1415.
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Emmanuel Di Valentin, Sébastien Bontems, Lionel Habran, Olivier Jolois, Nicolas Markine-Goriaynoff, Alain Vanderplasschen, Catherine Sadzot-Delvaux & Jacques Piette. (2005) Varicella-zoster virus IE63 protein represses the basal transcription machinery by disorganizing the pre-initiation complex. Biological Chemistry 386:3, pages 255-267.
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Kazuhiro Hayashi, Tomomichi Watanabe, Aki Tanaka, Tadashi Furumoto, Chiaki Sato-Tsuchiya, Makoto Kimura, Masayuki Yokoi, Akira Ishihama, Fumio Hanaoka & Yoshiaki Ohkuma. (2005) Studies of Schizosaccharomyces pombe TFIIE indicate conformational and functional changes in RNA polymerase II at transcription initiation . Genes to Cells 10:3, pages 207-224.
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Masahiko Okuda, Aki Tanaka, Yoko Arai, Manami Satoh, Hideyasu Okamura, Aritaka Nagadoi, Fumio Hanaoka, Yoshiaki Ohkuma & Yoshifumi Nishimura. (2004) A Novel Zinc Finger Structure in the Large Subunit of Human General Transcription Factor TFIIE. Journal of Biological Chemistry 279:49, pages 51395-51403.
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Seong-Jun Kim, Jung-Hee Kim, Yeon-Gu Kim, Ho-Soo Lim & Jong-Won Oh. (2004) Protein Kinase C-related Kinase 2 Regulates Hepatitis C Virus RNA Polymerase Function by Phosphorylation. Journal of Biological Chemistry 279:48, pages 50031-50041.
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Beno��t Palancade & Olivier Bensaude. (2003) Investigating RNA polymerase II carboxyl-terminal domain (CTD) phosphorylation. European Journal of Biochemistry 270:19, pages 3859-3870.
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Julian C. Knight, Brendan J. Keating, Kirk A. Rockett & Dominic P. Kwiatkowski. (2003) In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading. Nature Genetics 33:4, pages 469-475.
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Kenneth James Howe. (2002) RNA polymerase II conducts a symphony of pre-mRNA processing activities. Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 1577:2, pages 308-324.
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John W. Stiller & Benjamin D. Hall. (2002) Evolution of the RNA polymerase II C-terminal domain. Proceedings of the National Academy of Sciences 99:9, pages 6091-6096.
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Hitomi Sakurai & Akira Ishihama. (2002) Level of the RNA polymerase II in the fission yeast stays constant but phosphorylation of its carboxyl terminal domain varies depending on the phase and rate of cell growth. Genes to Cells 7:3, pages 273-284.
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Thomas Oelgeschläger. (2002) Regulation of RNA polymerase II activity by CTD phosphorylation and cell cycle control. Journal of Cellular Physiology 190:2, pages 160-169.
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Marie-France Langelier, Diane Forget, Andrés Rojas, Yanie Porlier, Zachary F. Burton & Benoit Coulombe. (2001) Structural and Functional Interactions of Transcription Factor (TF) IIA with TFIIE and TFIIF in Transcription Initiation by RNA Polymerase II. Journal of Biological Chemistry 276:42, pages 38652-38657.
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