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Molecular and Cellular Biology Volume 21, 2001 - Issue 8
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DNA Dynamics and Chromosome Structure

Two Compound Replication Origins in Saccharomyces cerevisiae Contain Redundant Origin Recognition Complex Binding Sites

James F. TheisDepartment of Microbiology and Molecular Genetics, UMDNJ-New Jersey Medical School, Newark, New Jersey07103
&
Carol S. NewlonDepartment of Microbiology and Molecular Genetics, UMDNJ-New Jersey Medical School, Newark, New Jersey07103Correspondence[email protected]
Pages 2790-2801 | Received 19 Oct 2000, Accepted 25 Jan 2001, Published online: 28 Mar 2023

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Ann Dershowitz, Marylynn Snyder, Mohammed Sbia, Joan H. Skurnick, Loke Y. Ong & Carol S. Newlon. (2007) Linear Derivatives of Saccharomyces cerevisiae Chromosome III Can Be Maintained in the Absence of Autonomously Replicating Sequence Elements. Molecular and Cellular Biology 27:13, pages 4652-4663.
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Victoria K. Chang, Justin J. Donato, Clarence S. Chan & Bik K. Tye. (2004) Mcm1 Promotes Replication Initiation by Binding Specific Elements at Replication Origins. Molecular and Cellular Biology 24:14, pages 6514-6524.
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Lixin Wang, Chii-Mei Lin, Sarah Brooks, Dan Cimbora, Mark Groudine & Mirit I. Aladjem. (2004) The Human β-Globin Replication Initiation Region Consists of Two Modular Independent Replicators. Molecular and Cellular Biology 24:8, pages 3373-3386.
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Articles from other publishers (33)

Yixin Hu & Bruce Stillman. (2023) Origins of DNA replication in eukaryotes. Molecular Cell 83:3, pages 352-372.
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Tricia J Cluett, Gokhan Akman, Aurelio Reyes, Lawrence Kazak, Alice Mitchell, Stuart R Wood, Antonella Spinazzola, Johannes N Spelbrink & Ian J Holt. (2018) Transcript availability dictates the balance between strand-asynchronous and strand-coupled mitochondrial DNA replication. Nucleic Acids Research.
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Vinod Kumar Singh, Vipin Kumar & Annangarachari Krishnamachari. (2018) Prediction of replication sites in Saccharomyces cerevisiae genome using DNA segment properties: Multi-view ensemble learning (MEL) approach. Biosystems 163, pages 59-69.
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Carmela Irene, James F. Theis, David Gresham, Patricia Soteropoulos & Carol S. Newlon. (2015) Hst3p, a histone deacetylase, promotes maintenance of Saccharomyces cerevisiae chromosome III lacking efficient replication origins. Molecular Genetics and Genomics 291:1, pages 271-283.
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M.L. DePamphilis. 2016. Mammalian Preimplantation Development. Mammalian Preimplantation Development 55 102 .
Hung-Ji Tsai, Joshua A. Baller, Ivan Liachko, Amnon Koren, Laura S. Burrack, Meleah A. Hickman, Mathuravani A. Thevandavakkam, Laura N. Rusche & Judith Berman. (2014) Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres. mBio 5:5.
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Guilhem Janbon, Kate L. Ormerod, Damien Paulet, Edmond J. Byrnes, Vikas Yadav, Gautam Chatterjee, Nandita Mullapudi, Chung-Chau Hon, R. Blake Billmyre, François Brunel, Yong-Sun Bahn, Weidong Chen, Yuan Chen, Eve W. L. Chow, Jean-Yves Coppée, Anna Floyd-Averette, Claude Gaillardin, Kimberly J. Gerik, Jonathan Goldberg, Sara Gonzalez-Hilarion, Sharvari Gujja, Joyce L. Hamlin, Yen-Ping Hsueh, Giuseppe Ianiri, Steven Jones, Chinnappa D. Kodira, Lukasz Kozubowski, Woei Lam, Marco Marra, Larry D. Mesner, Piotr A. Mieczkowski, Frédérique Moyrand, Kirsten Nielsen, Caroline Proux, Tristan Rossignol, Jacqueline E. Schein, Sheng Sun, Carolin Wollschlaeger, Ian A. Wood, Qiandong Zeng, Cécile Neuvéglise, Carol S. Newlon, John R. Perfect, Jennifer K. Lodge, Alexander Idnurm, Jason E. Stajich, James W. Kronstad, Kaustuv Sanyal, Joseph Heitman, James A. Fraser, Christina A. Cuomo & Fred S. Dietrich. (2014) Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation. PLoS Genetics 10:4, pages e1004261.
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Carolin A. Müller, Michelle Hawkins, Renata Retkute, Sunir Malla, Ray Wilson, Martin J. Blythe, Ryuichiro Nakato, Makiko Komata, Katsuhiko Shirahige, Alessandro P.S. de Moura & Conrad A. Nieduszynski. (2014) The dynamics of genome replication using deep sequencing. Nucleic Acids Research 42:1, pages e3-e3.
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Kazumasa Yoshida, Ana Poveda & Philippe Pasero. (2013) Time to Be Versatile: Regulation of the Replication Timing Program in Budding Yeast. Journal of Molecular Biology 425:23, pages 4696-4705.
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Huilin Li & Bruce Stillman. 2012. The Eukaryotic Replisome: a Guide to Protein Structure and Function. The Eukaryotic Replisome: a Guide to Protein Structure and Function 37 58 .
Melvenia M. Martin, Michael Ryan, RyangGuk Kim, Anna L. Zakas, Haiqing Fu, Chii Mei Lin, William C. Reinhold, Sean R. Davis, Sven Bilke, Hongfang Liu, James H. Doroshow, Mark A. Reimers, Manuel S. Valenzuela, Yves Pommier, Paul S. Meltzer & Mirit I. Aladjem. (2011) Genome-wide depletion of replication initiation events in highly transcribed regions. Genome Research 21:11, pages 1822-1832.
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James F. Theis, Carmela Irene, Ann Dershowitz, Renee L. Brost, Michael L. Tobin, Fabiana M. di Sanzo, Jian-Ying Wang, Charles Boone & Carol S. Newlon. (2010) The DNA Damage Response Pathway Contributes to the Stability of Chromosome III Derivatives Lacking Efficient Replicators. PLoS Genetics 6:12, pages e1001227.
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Cristina Cotobal, Mónica Segurado & Francisco Antequera. (2010) Structural diversity and dynamics of genomic replication origins in Schizosaccharomyces pombe. The EMBO Journal 29:5, pages 934-942.
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M. K. Raghuraman & Bonita J. Brewer. (2009) Molecular analysis of the replication program in unicellular model organisms. Chromosome Research 18:1, pages 19-34.
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James F Theis, Ann Dershowitz, Carmela Irene, Clelia Maciariello, Michael L Tobin, Giordano Liberi, Sahba Tabrizifard, Malgorzata Korus, Lucia Fabiani & Carol S Newlon. (2007) Identification of Mutations That Decrease the Stability of a Fragment of Saccharomyces cerevisiae Chromosome III Lacking Efficient Replicators . Genetics 177:3, pages 1445-1458.
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Mirit I. Aladjem. (2007) Replication in context: dynamic regulation of DNA replication patterns in metazoans. Nature Reviews Genetics 8:8, pages 588-600.
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Carmela Irene, Clelia Maciariello, Gioacchino Micheli, James F. Theis, Carol S. Newlon & Lucia Fabiani. (2006) DNA elements modulating the KARS12 chromosomal replicator in Kluyveromyces lactis. Molecular Genetics and Genomics 277:3, pages 287-299.
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Yung-Tsi Bolon & Anja-Katrin Bielinsky. (2006) The spatial arrangement of ORC binding modules determines the functionality of replication origins in budding yeast. Nucleic Acids Research 34:18, pages 5069-5080.
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Conrad A. Nieduszynski, Yvonne Knox & Anne D. Donaldson. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes & Development 20:14, pages 1874-1879.
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Roberta Bergero. (2006) AT-rich sequences from the arbuscular mycorrhizal fungus Gigaspora rosea exhibit ARS function in the yeast Saccharomyces cerevisiae. Fungal Genetics and Biology 43:5, pages 337-342.
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Valerie Wood. 2006. Comparative Genomics. Comparative Genomics 233 285 .
Nicholas P. Robinson & Stephen D. Bell. (2005) Origins of DNA replication in the three domains of life. FEBS Journal 272:15, pages 3757-3766.
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Etienne Schwob. (2004) Flexibility and governance in eukaryotic DNA replication. Current Opinion in Microbiology 7:6, pages 680-690.
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Carmela Irene, Clelia Maciariello, Francesco Cioci, Giorgio Camilloni, Carol S. Newlon & Lucia Fabiani. (2004) Identification of the sequences required for chromosomal replicator function in Kluyveromyces lactis. Molecular Microbiology 51:5, pages 1413-1423.
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Michael Weinreich, Madeleine A Palacios DeBeer & Catherine A Fox. (2004) The activities of eukaryotic replication origins in chromatin. Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 1677:1-3, pages 142-157.
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Mónica Segurado, Alberto de Luis & Francisco Antequera. (2003) Genome‐wide distribution of DNA replication origins at A+T‐rich islands in Schizosaccharomyces pombe . EMBO reports 4:11, pages 1048-1053.
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Victoria K. Chang, Michael J. Fitch, Justin J. Donato, Tim W. Christensen, A. Margaret Merchant & Bik K. Tye. (2003) Mcm1 Binds Replication Origins. Journal of Biological Chemistry 278:8, pages 6093-6100.
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Isabelle A. Lucas & M.K. Raghuraman. 2003. 1 73 .
Susan A Gerbi & Anja-Katrin Bielinsky. (2002) DNA replication and chromatin. Current Opinion in Genetics & Development 12:2, pages 243-248.
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Arkadi Poloumienko, Ann Dershowitz, Jitakshi De & Carol S. Newlon. (2001) Completion of Replication Map of Saccharomyces cerevisiae Chromosome III . Molecular Biology of the Cell 12:11, pages 3317-3327.
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Marcel Méchali. (2001) DNA replication origins: from sequence specificity to epigenetics. Nature Reviews Genetics 2:8, pages 640-645.
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. (2001) Current Awareness. Yeast 18:10, pages 995-1002.
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Anna Malkova, Laurence Signon, Christopher B. Schaefer, Maria L. Naylor, James F. Theis, Carol S. Newlon & James E. Haber. (2001) RAD51-independent break-induced replication to repair a broken chromosome depends on a distant enhancer site. Genes & Development 15:9, pages 1055-1060.
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