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Molecular and Cellular Biology Volume 24, 2004 - Issue 9
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Transcriptional Regulation

High-Level Activation of Transcription of the Yeast U6 snRNA Gene in Chromatin by the Basal RNA Polymerase III Transcription Factor TFIIIC

Sushma Shivaswamy1 Centre for Cellular and Molecular Biology, Tarnaka, Hyderabad500007, India
,
George A. Kassavetis2 Division of Biological Sciences and Center for Molecular Genetics, University of California, San Diego, La Jolla, California92093
&
Purnima Bhargava1 Centre for Cellular and Molecular Biology, Tarnaka, Hyderabad500007, IndiaCorrespondence[email protected]
Pages 3596-3606 | Received 26 Nov 2003, Accepted 05 Feb 2004, Published online: 27 Mar 2023

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Aneeshkumar Gopalakrishnan Arimbasseri & Purnima Bhargava. (2008) Chromatin Structure and Expression of a Gene Transcribed by RNA Polymerase III Are Independent of H2A.Z Deposition. Molecular and Cellular Biology 28:8, pages 2598-2607.
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Chih-Chi Yuan, Xinyang Zhao, Laurence Florens, Selene K. Swanson, Michael P. Washburn & Nouria Hernandez. (2007) CHD8 Associates with Human Staf and Contributes to Efficient U6 RNA Polymerase III Transcription. Molecular and Cellular Biology 27:24, pages 8729-8738.
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Articles from other publishers (27)

Vinesh Vinayachandran & Purnima Bhargava. (2022) Structural Features of the Nucleosomal DNA Modulate the Functional Binding of a Transcription Factor and Productive Transcription. Frontiers in Genetics 13.
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Ashutosh Shukla, Pratibha Bhalla, Pooja Kiran Potdar, Preethi Jampala & Purnima Bhargava. (2021) Transcription-dependent enrichment of the yeast FACT complex influences nucleosome dynamics on the RNA polymerase III-transcribed genes. RNA 27:3, pages 273-290.
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Pratibha Bhalla, Dipti Vinayak Vernekar, Benoit Gilquin, Yohann Couté & Purnima Bhargava. (2019) Interactome of the yeast RNA polymerase III transcription machinery constitutes several chromatin modifiers and regulators of the genes transcribed by RNA polymerase II. Gene 702, pages 205-214.
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Allison L. Didychuk, Samuel E. Butcher & David A. Brow. (2018) The life of U6 small nuclear RNA, from cradle to grave. RNA 24:4, pages 437-460.
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Ashutosh Shukla & Purnima Bhargava. (2018) Regulation of tRNA gene transcription by the chromatin structure and nucleosome dynamics. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1861:4, pages 295-309.
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Alexandra Søgaard Helbo, Fides D. Lay, Peter A. Jones, Gangning Liang & Kirsten Grønbæk. (2017) Nucleosome Positioning and NDR Structure at RNA Polymerase III Promoters. Scientific Reports 7:1.
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Jong-Lyul Park, Yeon-Su Lee, Nawapol Kunkeaw, Seon-Young Kim, In-Hoo Kim & Yong Sun Lee. (2017) Epigenetic regulation of noncoding RNA transcription by mammalian RNA polymerase III. Epigenomics 9:2, pages 171-187.
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Juan Wang, Shasha Zhao, Yun Wei, Ying Zhou, Paul Shore & Wensheng Deng. (2016) Cytoskeletal Filamin A Differentially Modulates RNA Polymerase III Gene Transcription in Transformed Cell Lines. Journal of Biological Chemistry 291:48, pages 25239-25246.
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Dimitar N. Azmanov, Stefan J. Siira, Teodora Chamova, Ara Kaprelyan, Velina Guergueltcheva, Anne-Marie J. Shearwood, Ganqiang Liu, Bharti Morar, Oliver Rackham, Michael Bynevelt, Margarita Grudkova, Zdravko Kamenov, Vassil Svechtarov, Ivailo Tournev, Luba Kalaydjieva & Aleksandra Filipovska. (2016) Transcriptome-wide effects of a POLR3A gene mutation in patients with an unusual phenotype of striatal involvement . Human Molecular Genetics 25:19, pages 4302-4314.
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Purnima Bhargava. (2013) Epigenetic regulation of transcription by RNA polymerase III. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:10, pages 1015-1025.
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Benjamin Albert, Julien Mathon, Ashutosh Shukla, Hicham Saad, Christophe Normand, Isabelle Léger-Silvestre, David Villa, Alain Kamgoue, Julien Mozziconacci, Hua Wong, Christophe Zimmer, Purnima Bhargava, Aurélien Bancaud & Olivier Gadal. (2013) Systematic characterization of the conformation and dynamics of budding yeast chromosome XII. Journal of Cell Biology 202:2, pages 201-210.
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Giorgio Dieci, Maria Cristina Bosio, Beatrice Fermi & Roberto Ferrari. (2013) Transcription reinitiation by RNA polymerase III. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 331-341.
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Aneeshkumar G. Arimbasseri, Keshab Rijal & Richard J. Maraia. (2013) Transcription termination by the eukaryotic RNA polymerase III. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 318-330.
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Joël Acker, Christine Conesa & Olivier Lefebvre. (2013) Yeast RNA polymerase III transcription factors and effectors. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 283-295.
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Andrea Orioli, Chiara Pascali, Aldo Pagano, Martin Teichmann & Giorgio Dieci. (2012) RNA polymerase III transcription control elements: Themes and variations. Gene 493:2, pages 185-194.
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Sahasransu Mahapatra, Pooran S. Dewari, Anubhav Bhardwaj & Purnima Bhargava. (2011) Yeast H2A.Z, FACT complex and RSC regulate transcription of tRNA gene through differential dynamics of flanking nucleosomes. Nucleic Acids Research 39:10, pages 4023-4034.
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Purnima Bhargava. (2010) Epigenetics to proteomics: From yeast to brain. PROTEOMICS 10:4, pages 749-770.
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Vinesh Vinayachandran, Rama-Haritha Pusarla & Purnima Bhargava. (2009) Multiple sequence-directed possibilities provide a pool of nucleosome position choices in different states of activity of a gene. Epigenetics & Chromatin 2:1.
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Rama-Haritha Pusarla, Vinesh Vinayachandran & Purnima Bhargava. (2007) Nucleosome positioning in relation to nucleosome spacing and DNA sequence-specific binding of a protein. FEBS Journal 274:9, pages 2396-2410.
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Anastasia Mylona, Carlos Fernández-Tornero, Pierre Legrand, Melina Haupt, André Sentenac, Joël Acker & Christoph W. Müller. (2006) Structure of the τ60/Δτ91 Subcomplex of Yeast Transcription Factor IIIC: Insights into Preinitiation Complex Assembly. Molecular Cell 24:2, pages 221-232.
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Akhila Parthasarthy & Karumathil P. Gopinathan. (2006) Transcriptional activation of a moderately expressed tRNA gene by a positioned nucleosome . Biochemical Journal 396:3, pages 439-447.
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George A. Kassavetis, Robert Driscoll & E. Peter Geiduschek. (2006) Mapping the Principal Interaction Site of the Brf1 and Bdp1 Subunits of Saccharomyces cerevisiae TFIIIB. Journal of Biological Chemistry 281:20, pages 14321-14329.
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Sushma Shivaswamy & Purnima Bhargava. (2006) Positioned Nucleosomes Due to Sequential Remodeling of the Yeast U6 Small Nuclear RNA Chromatin Are Essential for Its Transcriptional Activation. Journal of Biological Chemistry 281:15, pages 10461-10472.
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Akhila Parthasarthy & Karumathil P. Gopinathan. (2005) Modulation of differential transcription of tRNA genes through chromatin organization. Biochemical Journal 391:2, pages 371-381.
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Mikael Sjölinder, Petra Björk, Emilia Söderberg, Nafiseh Sabri, Ann-Kristin Östlund Farrants & Neus Visa. (2005) The growing pre-mRNA recruits actin and chromatin-modifying factors to transcriptionally active genes. Genes & Development 19:16, pages 1871-1884.
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T. V. Nikitina & L. I. Tishchenko. (2005) RNA polymerase III transcription machinery: Structure and transcription regulation. Molecular Biology 39:2, pages 161-172.
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. (2004) Current awareness on yeast. Yeast 21:13, pages 1133-1140.
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