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Gene Expression

Interactions of the Yeast SF3b Splicing Factor

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Pages 10745-10754 | Received 15 Jun 2005, Accepted 21 Sep 2005, Published online: 27 Mar 2023

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Clarisse van der Feltz & Aaron A. Hoskins. (2019) Structural and functional modularity of the U2 snRNP in pre-mRNA splicing. Critical Reviews in Biochemistry and Molecular Biology 54:5, pages 443-465.
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Yang Zhou & Marcus J. O. Johansson. (2017) The pre-mRNA retention and splicing complex controls expression of the Mediator subunit Med20. RNA Biology 14:10, pages 1411-1417.
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Ramachandran Rakesh, Agnel Praveen Joseph, Ramachandra M. Bhaskara & Narayanaswamy Srinivasan. (2016) Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps. RNA Biology 13:10, pages 1025-1040.
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Piotr Wysoczanski & Markus Zweckstetter. (2016) Retention and splicing complex (RES) – the importance of cooperativity. RNA Biology 13:2, pages 128-133.
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Wei Shao, Hyun-Soo Kim, Yang Cao, Yong-Zhen Xu & Charles C. Query. (2012) A U1-U2 snRNP Interaction Network during Intron Definition. Molecular and Cellular Biology 32:2, pages 470-478.
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Corbin S. Black, Thomas A. Whelan, Erin L. Garside, Andrew M. MacMillan, Naomi M. Fast & Stephen D. Rader. (2023) Spliceosome assembly and regulation: insights from analysis of highly reduced spliceosomes. RNA 29:5, pages 531-550.
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Yangchun Li, Zhaoping Wang, Zongwu Zhao & Yuting Cui. (2019) iTRAQ-based proteome profiling of hyposaline responses in zygotes of the Pacific oyster Crassostrea gigas. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 30, pages 14-24.
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Deepika Somani, Ragini Adhav, Ramya Prashant & Narendra Y. Kadoo. (2019) Transcriptomics analysis of propiconazole-treated Cochliobolus sativus reveals new putative azole targets in the plant pathogen. Functional & Integrative Genomics 19:3, pages 453-465.
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Tucker J. Carrocci, Douglas M. Zoerner, Joshua C. Paulson & Aaron A. Hoskins. (2017) SF3b1 mutations associated with myelodysplastic syndromes alter the fidelity of branchsite selection in yeast. Nucleic Acids Research, pages gkw1349.
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Rei Yoshimoto, Daisuke Kaida, Masaaki Furuno, A. Maxwell Burroughs, Shohei Noma, Harukazu Suzuki, Yumi Kawamura, Yoshihide Hayashizaki, Akila Mayeda & Minoru Yoshida. (2017) Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A. RNA 23:1, pages 47-57.
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Constantin Cretu, Jana Schmitzová, Almudena Ponce-Salvatierra, Olexandr Dybkov, Evelina I. De Laurentiis, Kundan Sharma, Cindy L. Will, Henning Urlaub, Reinhard Lührmann & Vladimir Pena. (2016) Molecular Architecture of SF3b and Structural Consequences of Its Cancer-Related Mutations. Molecular Cell 64:2, pages 307-319.
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Chengfu Sun, Norbert Rigo, Patrizia Fabrizio, Berthold Kastner & Reinhard Lührmann. (2016) A protein map of the yeast activated spliceosome as obtained by electron microscopy. RNA 22:9, pages 1427-1440.
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Norbert Rigo, Chengfu Sun, Patrizia Fabrizio, Berthold Kastner & Reinhard Lührmann. (2015) Protein localisation by electron microscopy reveals the architecture of the yeast spliceosomal B complex. The EMBO Journal 34:24, pages 3059-3073.
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Cornelius Schneider, Dmitry E. Agafonov, Jana Schmitzová, Klaus Hartmuth, Patrizia Fabrizio & Reinhard Lührmann. (2015) Dynamic Contacts of U2, RES, Cwc25, Prp8 and Prp45 Proteins with the Pre-mRNA Branch-Site and 3' Splice Site during Catalytic Activation and Step 1 Catalysis in Yeast Spliceosomes. PLOS Genetics 11:9, pages e1005539.
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Piotr Wysoczanski, Stefan Becker & Markus Zweckstetter. (2015) Structures of intermediates during RES complex assembly. Scientific Reports 5:1.
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Martha R. Stark, Elizabeth A. Dunn, William S. C. Dunn, Cameron J. Grisdale, Anthony R. Daniele, Matthew R. G. Halstead, Naomi M. Fast & Stephen D. Rader. (2015) Dramatically reduced spliceosome in Cyanidioschyzon merolae . Proceedings of the National Academy of Sciences 112:11.
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Piotr Wysoczański, Cornelius Schneider, ShengQi Xiang, Francesca Munari, Simon Trowitzsch, Markus C Wahl, Reinhard Lührmann, Stefan Becker & Markus Zweckstetter. (2014) Cooperative structure of the heterotrimeric pre-mRNA retention and splicing complex. Nature Structural & Molecular Biology 21:10, pages 911-918.
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Zhi-Min Zhang, Fei Yang, Jinru Zhang, Qing Tang, Jie Li, Jing Gu, Jiahai Zhou & Yong-Zhen Xu. (2013) Crystal Structure of Prp5p Reveals Interdomain Interactions that Impact Spliceosome Assembly. Cell Reports 5:5, pages 1269-1278.
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Yang Zhou, Changchun Chen & Marcus J. O. Johansson. (2013) The pre-mRNA retention and splicing complex controls tRNA maturation by promoting TAN1 expression. Nucleic Acids Research 41:11, pages 5669-5678.
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Shanshan Tuo, Kenichi Nakashima & John R. Pringle. (2012) Apparent Defect in Yeast Bud-Site Selection Due to a Specific Failure to Splice the Pre-mRNA of a Regulator of Cell-Type-Specific Transcription. PLoS ONE 7:10, pages e47621.
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Debjani Saha, Shataparna Banerjee, Samirul Bashir & Usha Vijayraghavan. (2012) Context dependent splicing functions of Bud31/Ycr063w define its role in budding and cell cycle progression. Biochemical and Biophysical Research Communications 424:3, pages 579-585.
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Debjani Saha, Piyush Khandelia, Raymond T. O'Keefe & Usha Vijayraghavan. (2012) Saccharomyces cerevisiae NineTeen Complex (NTC)-associated Factor Bud31/Ycr063w Assembles on Precatalytic Spliceosomes and Improves First and Second Step Pre-mRNA Splicing Efficiency. Journal of Biological Chemistry 287:8, pages 5390-5399.
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Reiko Takemura, Toshihiko Takeiwa, Ichiro Taniguchi, Asako McCloskey & Mutsuhito Ohno. (2011) Multiple factors in the early splicing complex are involved in the nuclear retention of pre-mRNAs in mammalian cells. Genes to Cells 16:10, pages 1035-1049.
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Brian C. Rymond. 2010. Post-Transcriptional Regulation by STAR Proteins. Post-Transcriptional Regulation by STAR Proteins 123 141 .
Gwendolyn M. Wilmes, Megan Bergkessel, Sourav Bandyopadhyay, Michael Shales, Hannes Braberg, Gerard Cagney, Sean R. Collins, Gregg B. Whitworth, Tracy L. Kress, Jonathan S. Weissman, Trey Ideker, Christine Guthrie & Nevan J. Krogan. (2008) A Genetic Interaction Map of RNA-Processing Factors Reveals Links between Sem1/Dss1-Containing Complexes and mRNA Export and Splicing. Molecular Cell 32:5, pages 735-746.
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Kristine O'Brien, Arianne J. Matlin, April M. Lowell & Melissa J. Moore. (2008) The Biflavonoid Isoginkgetin Is a General Inhibitor of Pre-mRNA Splicing. Journal of Biological Chemistry 283:48, pages 33147-33154.
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Simon Trowitzsch, Gert Weber, Reinhard Lührmann & Markus C. Wahl. (2008) An Unusual RNA Recognition Motif Acts as a Scaffold for Multiple Proteins in the Pre-mRNA Retention and Splicing Complex. Journal of Biological Chemistry 283:47, pages 32317-32327.
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Anne-Marie M. van RoonNikolaus M. Loening, Eiji ObayashiJi-Chun YangAndrew J. NewmanHelena Hernández, Kiyoshi NagaiDavid Neuhaus. (2008) Solution structure of the U2 snRNP protein Rds3p reveals a knotted zinc-finger motif. Proceedings of the National Academy of Sciences 105:28, pages 9621-9626.
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Tom Schmidlin, Matt Kaeberlein, Brian A. Kudlow, Vivian MacKay, Daniel Lockshon & Brian K. Kennedy. (2008) Single-gene deletions that restore mating competence to diploid yeast. FEMS Yeast Research 8:2, pages 276-286.
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Q. Wang, L. Zhang, B. Lynn & B. C. Rymond. (2008) A BBP-Mud2p heterodimer mediates branchpoint recognition and influences splicing substrate abundance in budding yeast. Nucleic Acids Research 36:8, pages 2787-2798.
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Brian Rymond. (2007) Targeting the spliceosome. Nature Chemical Biology 3:9, pages 533-535.
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Daisuke Kaida, Hajime Motoyoshi, Etsu Tashiro, Takayuki Nojima, Masatoshi Hagiwara, Ken Ishigami, Hidenori Watanabe, Takeshi Kitahara, Tatsuhiko Yoshida, Hidenori Nakajima, Tokio Tani, Sueharu Horinouchi & Minoru Yoshida. (2007) Spliceostatin A targets SF3b and inhibits both splicing and nuclear retention of pre-mRNA. Nature Chemical Biology 3:9, pages 576-583.
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Shatakshi Pandit, Bert Lynn & Brian C. Rymond. (2006) Inhibition of a spliceosome turnover pathway suppresses splicing defects. Proceedings of the National Academy of Sciences 103:37, pages 13700-13705.
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Frederick W. ScherrerJrJr & Marc Spingola. (2006) A subset of Mer1p-dependent introns requires Bud13p for splicing activation and nuclear retention. RNA 12:7, pages 1361-1372.
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